--- trunk/mattDisertation/disertation.bib	2004/02/02 21:56:16	1003
+++ trunk/mattDisertation/disertation.bib	2004/02/16 20:35:58	1054
@@ -1693,5 +1693,205 @@ on Foundations of Computer Science},
   title = 	 {Introduction to Modern Statistical Mechanics},
   publisher = 	 {Oxford University Press},
   year = 	 1987
+}
+
+
+@Article{pearlman:1995,
+  author = 	 {David~A. Pearlman and David~A. Case and James~W. Caldwell and Wilson~S. Ross and Thomas~E. Cheatham~III and Steve DeBolt and David Ferguson and George Seibel and Peter Kollman},
+  title = 	 {{\sc amber}, a package of computer programs for applying molecular mechanics. normal mode analysis, molecular dynamics, and free energy calculations to simulate the structural and energetic properties of molecules},
+  journal = 	 {Computer Physics Communications},
+  year = 	 1995,
+  volume =	 91,
+  pages =	 {1-41}
+}
+
+@Book{Goldstein01,
+  author = 	 {H. Goldstein and C. Poole and J. Safko},
+  title = 	 {Classical Mechanics},
+  publisher = 	 {Addison Wesley},
+  year = 	 2001,
+  address =	 {San Francisco},
+  edition =	 {3rd}
+}
+
+@Article{Gezelter04,
+  author = 	 {C.~J. Fennell and J.~D. Gezelter},
+  title = 	 {On the temperature dependent properties of the soft sticky 
+                  dipole (SSD) and related single point water models},
+  journal = 	 {Submitted for Publication},
+  year = 	 2004,
+  volume =	 ?,
+  pages =	 {?},
+}
+
+@Article{Bratko85,
+  author = 	 {D. Bratko and L. Blum and A. Luzar},
+  title = 	 {A simple model for the intermolecular potential of water},
+  journal = 	 jcp,
+  year = 	 1985,
+  volume =	 83,
+  number =	 12,
+  pages =	 {6367-6370}
+}
+
+@Article{Bratko95,
+  author = 	 {L. Blum and F. Vericat and D. Bratko},
+  title = 	 {Towards an analytical model of water: The octupolar model},
+  journal = 	 jcp,
+  year = 	 1995,
+  volume =	 102,
+  number =	 3,
+  pages =	 {1461-1462}
+}
+
+@Article{Ichiye03,
+  author = 	 {M.-L. Tan and J.~T. Fischer and A. Chandra and B.~R. Brooks 
+                  and T. Ichiye},
+  title = 	 {A temperature of maximum density in soft sticky dipole 
+                  water},
+  journal = 	 cpl,
+  year = 	 2003,
+  volume =	 376,
+  pages =	 {646-652},
+}
+
+
+@Article{Soper86,
+  author = 	 {A.~K. Soper and M.~G. Phillips},
+  title = 	 {A new determination of the structure of water at 298K},
+  journal = 	 cp,
+  year = 	 1986,
+  volume =	 107,
+  number =	 1,
+  pages =	 {47-60},
+}
+
+@Article{plimpton95,
+  author = 	 {S. Plimpton},
+  title = 	 {Fast Parallel Algorithms for Short-Range Molecular Dymanics},
+  journal = 	 jcompp,
+  year = 	 1995,
+  volume =	 117,
+  pages =	 {1-19}
+}
+
+@Article{plimpton93,
+  author = 	 {S.~J. Plimpton and B.~A. Hendrickson},
+  title = 	 {Parallel Molecular Dynamics with the Embedded Atom Method},
+  journal = 	 {MRS Proceedings},
+  year = 	 1993,
+  volume =	 291,
+  pages =	 37
+}
+
+
+@Article{Ercolessi02,
+  author = 	 {U. Tartaglino and E. Tosatti and D. Passerone and F. Ercolessi},
+  title = 	 {Bending strain-driven modification of surface resconstructions: Au(111)},
+  journal = 	 prb,
+  year = 	 2002,
+  volume =	 65,
+  pages =	 241406
+}
+
+@Article{Ercolessi88,
+  author = 	 {F. Ercolessi  and M. Parrinello  and E. Tosatti},
+  title = 	 {Simulation of Gold in the Glue Model.},
+  journal = 	 {Philosophical Magazine A},
+  year = 	 1988,
+  volume =	 58,
+  pages =	 {213-226}
 }
 
+@Article{Finnis84,
+  author = 	 {M.~W Finnis and J.~E. Sinclair },
+  title = 	 {A Simple Empirical N-Body Potential for Transition-Metals},
+  journal = 	 {Phil. Mag. A},
+  year = 	 1984,
+  volume =	 50,
+  pages =	 {45-55}
+}
+
+@Article{FBD86,
+  author =       {S.~M. Foiles and M.~I. Baskes and M.~S. Daw},
+  title =        {Embedded-atom-method functions for the fcc metals
+Cu, Ag, Au,Ni,Pd,Pt, and their alloys},
+  journal =      prb,
+  year =         1986,
+  volume =       33,
+  number =       12,
+  pages =        7983
+}
+
+@Article{johnson89,
+  author = 	 {R.~A. Johnson},
+  title = 	 {Alloy models with the embedded-atom method},
+  journal = 	 prb,
+  year = 	 1989,
+  volume =	 39,
+  number =	 17,
+  pages =	 12554
+}
+
+@Article{Laird97,
+  author = 	 {A. Kol and B.~B. Laird and B.~J. Leimkuhler},
+  title = 	 {A symplectic method for rigid-body molecular simulation},
+  journal = 	 jcp,
+  year = 	 1997,
+  volume =	 107,
+  number =	 7,
+  pages =	 {2580-2588}
+}
+
+
+@Article{hoover85,
+  author = 	 {W.~G. Hoover},
+  title = 	 {Canonical dynamics: Equilibrium phase-space distributions},
+  journal = 	 pra,
+  year = 	 1985,
+  volume =	 31,
+  pages =	 1695
+}
+
+@Article{Roux91,
+  author = 	 {B. Roux and M. Karplus},
+  title = 	 {Ion transport in a Gramicidn-like channel: dynamics and mobility},
+  journal = 	 jpc,
+  year = 	 1991,
+  volume =	 95,
+  number =	 15,
+  pages =	 {4856-4868}
+}
+
+
+@Article{Marrink94,
+  author = 	 {S.~J Marrink and H.~J.~C. Berendsen},
+  title = 	 {Simulation of water transport through a lipid membrane},
+  journal = 	 jpc,
+  year = 	 1994,
+  volume =	 98,
+  number =	 15,
+  pages =	 {4155-4168}
+}
+
+
+@Article{Daw89,
+  author = 	 {Murray~S. Daw},
+  title = 	 {Model of metallic cohesion: The embedded-atom method},
+  journal = 	 {Physical Review B},
+  year = 	 1989,
+  volume =	 39,
+  pages =	 {7441-7452}
+}
+
+@InBook{voter,
+  author =	 {A.~F. Voter},
+  editor =	 {J.~H. Westbrook and R.~L. Fleischer},
+  title = 	 {Intermetallic Compounds: Principles and Practice},
+  chapter = 	 4,
+  publisher = 	 {John Wiley and Sons Ltd},
+  year = 	 1995,
+  volume =	 1,
+  pages =	 77
+}
+