--- trunk/mattDisertation/phdPreamble.tex	2004/02/04 20:23:20	1021
+++ trunk/mattDisertation/phdPreamble.tex	2004/03/07 04:01:29	1088
@@ -2,18 +2,22 @@
 \usepackage{graphicx}
 \usepackage{psfrag}
 \usepackage{amsmath}
+\usepackage{amssymb}
 \usepackage{color}
+\usepackage{listings}
 
 \includeonly{preview}
 
 \begin{document}
+\renewcommand{\lstlistlistingname}{SCHEMES}
+\renewcommand{\lstlistingname}{Scheme}
 \frontmatter
 \work{Dissertation}  % Change to ``Thesis'' for Master's thesis
-\title{STATISTICAL MECHANICAL SIMULATIONS OF PHOSPHOLIPID BILAYERS, SILICON PHTHALOCYANINES, AND THE DEVELOPMENT OF THE SIMULATION PACKAGE OOPSE}
+\title{STATISTICAL MECHANICS SIMULATIONS OF SURFACE COVERAGE AND PHOSPHOLIPID BILAYERS}
 \author{Matthew A. Meineke}
 \degprior{B.Sc.}                 % All previously earned degrees
 \degaward{Doctor of Philosophy}  % What this paper is for
-\advisor{Dr. J. Daniel Gezelter} % supervisor/director/advisor
+\advisor{J. Daniel Gezelter} % supervisor/director/advisor
 %% \advisorB{}            % second supervisor/director/advisor (if present)
 \department{Chemistry and Biochemistry}      % Dept. granting the degree
 \maketitle                % Uncomment to get the title page printed out
@@ -25,14 +29,15 @@ gold (111) surface. {\sc oopse} is a simulation packag
 molecular dynamics simulation package {\sc oopse}. The first
 investigation was using a random sequential adsorption model to
 elucidate the adsorption of two related silicon phthalocyanines on a
-gold (111) surface. {\sc oopse} is a simulation package capable of
-high performance parallel computer processing. Working with
-colleagues, I developed {\sc oopse} to the point that it was capable
-of simulating my phospholipid bilayer model. The model is a mesoscale
-parameterization of phospholipids in order to simulate large sytems
-for long trajectories within a reasonable time frame. Using {\sc
-oopse}, I have simulated the gel to fluid phase transition for the
-mesoscale model.
+gold (111) surface. {\sc oopse} is a molecular simulation package
+capable of carrying out high performance parallel molecular dynamics
+trajectories. Working with colleagues, I developed {\sc oopse} to the
+point that it was capable of simulating my phospholipid bilayer
+model. The model is a mesoscale parameterization of phospholipids in
+order to simulate large sytems for long times within a reasonable
+amount of computational time. Using {\sc oopse}, I have simulated a
+bilayer over a range of temperatures, and have observed bilayer
+self-assembly on the 20~ns time scale.
 
 \end{abstract}
 
@@ -45,13 +50,17 @@ and supported me throughout all of this work.
 \tableofcontents
 \listoffigures          % If you don't have any figures or tables, comment
 \listoftables        % out these two lines.
+\lstlistoflistings
+
 \begin{acknowledge}    % acknowledgments go here
 
 	\noindent I am grateful to my advisor, Dr. Gezelter for all of
 	his patience and guidance. I am also grateful to my coworkers
 	Charles F.~Vardeman II, Teng Lin, Christopher J.~Fennell,
-	Xiuquan Sun, and Yang Zheng for all of the help and comments
-	performing this research and while writing this dissertation.
+	Xiuquan Sun, Yang Zheng, Jayashree Saha, Changsen Xu, Peter
+	DeCarlo, Dan Combest, Pat Conforti, and Megan Sprague for all
+	of their help and comments while performing this research and
+	while writing this dissertation.
 
 \end{acknowledge}