--- trunk/mattDisertation/phdPreamble.tex 2004/03/05 00:07:19 1083 +++ trunk/mattDisertation/phdPreamble.tex 2004/04/15 19:19:06 1115 @@ -1,4 +1,4 @@ -\documentclass[dvips,noindentfirst]{ndthesis} +\documentclass[nosummary,dvips,noindentfirst]{ndthesis} \usepackage{graphicx} \usepackage{psfrag} \usepackage{amsmath} @@ -29,14 +29,15 @@ gold (111) surface. {\sc oopse} is a simulation packag molecular dynamics simulation package {\sc oopse}. The first investigation was using a random sequential adsorption model to elucidate the adsorption of two related silicon phthalocyanines on a -gold (111) surface. {\sc oopse} is a simulation package capable of -high performance parallel computer processing. Working with -colleagues, I developed {\sc oopse} to the point that it was capable -of simulating my phospholipid bilayer model. The model is a mesoscale -parameterization of phospholipids in order to simulate large sytems -for long trajectories within a reasonable time frame. Using {\sc -oopse}, I have simulated the gel to fluid phase transition for the -mesoscale model. +gold (111) surface. {\sc oopse} is a molecular simulation package +capable of carrying out high performance parallel molecular dynamics +trajectories. Working with colleagues, I developed {\sc oopse} to the +point that it was capable of simulating my phospholipid bilayer +model. The model is a mesoscale parameterization of phospholipids in +order to simulate large sytems for long times within a reasonable +amount of computational time. Using {\sc oopse}, I have simulated a +bilayer over a range of temperatures, and have observed bilayer +self-assembly on the 20~ns time scale. \end{abstract} @@ -56,8 +57,10 @@ and supported me throughout all of this work. \noindent I am grateful to my advisor, Dr. Gezelter for all of his patience and guidance. I am also grateful to my coworkers Charles F.~Vardeman II, Teng Lin, Christopher J.~Fennell, - Xiuquan Sun, and Yang Zheng for all of the help and comments - performing this research and while writing this dissertation. + Xiuquan Sun, Yang Zheng, Jayashree Saha, Changsen Xu, Peter + DeCarlo, Dan Combest, Pat Conforti, and Megan Sprague for all + of their help and comments while performing this research and + while writing this dissertation. \end{acknowledge}