1 |
xsun |
3147 |
|
2 |
gezelter |
3204 |
%% Created for Dan Gezelter at 2007-08-02 15:40:10 -0400 |
3 |
gezelter |
3199 |
|
4 |
|
|
|
5 |
|
|
%% Saved with string encoding Western (ASCII) |
6 |
|
|
|
7 |
|
|
|
8 |
|
|
@string{acp = {Adv. Chem. Phys.}} |
9 |
|
|
|
10 |
|
|
@string{bj = {Biophys. J.}} |
11 |
|
|
|
12 |
|
|
@string{cp = {Chem. Phys.}} |
13 |
|
|
|
14 |
|
|
@string{cpc = {Comp. Phys. Comm.}} |
15 |
|
|
|
16 |
|
|
@string{cpl = {Chem. Phys. Lett.}} |
17 |
|
|
|
18 |
|
|
@string{jacs = {J. Am. Chem. Soc.}} |
19 |
|
|
|
20 |
|
|
@string{jcc = {J. Comp. Chem.}} |
21 |
|
|
|
22 |
|
|
@string{jcp = {J. Chem. Phys.}} |
23 |
|
|
|
24 |
|
|
@string{jml = {J. Mol. Liq.}} |
25 |
|
|
|
26 |
|
|
@string{jpc = {J. Phys. Chem.}} |
27 |
|
|
|
28 |
|
|
@string{jpca = {J. Phys. Chem. A}} |
29 |
|
|
|
30 |
|
|
@string{jpcb = {J. Phys. Chem. B}} |
31 |
|
|
|
32 |
|
|
@string{mp = {Mol. Phys.}} |
33 |
|
|
|
34 |
|
|
@string{pnas = {Proc. Natl. Acad. Sci. USA}} |
35 |
|
|
|
36 |
|
|
@string{pra = {Phys. Rev. A}} |
37 |
|
|
|
38 |
|
|
@string{prb = {Phys. Rev. B}} |
39 |
|
|
|
40 |
|
|
@string{pre = {Phys. Rev. E}} |
41 |
|
|
|
42 |
|
|
@string{prl = {Phys. Rev. Lett.}} |
43 |
|
|
|
44 |
|
|
@string{rmp = {Rev. Mod. Phys.}} |
45 |
|
|
|
46 |
|
|
|
47 |
gezelter |
3204 |
@article{NorbertKucerka06012006, |
48 |
|
|
Abstract = {X-ray data are presented for the benchmark dipalmitoylphosphatidylcholine lipid bilayer in the most biologically relevant state in which the bilayers are fully hydrated and in the fluid (liquid-crystalline) phase. Form factors F(qz) are obtained from a combination of two sample preparations, oriented stacks of bilayers for qz extending to 0.85 A-1 and unilamellar vesicles for smaller qz. Modeling obtains the electron density profile and values for the area per molecule, for the locations of the component groups, and for the different types of thicknesses of the bilayer, such as the hydrocarbon thickness and the steric thickness. |
49 |
|
|
}, |
50 |
|
|
Author = {Kucerka, Norbert and Tristram-Nagle, Stephanie and Nagle, John F.}, |
51 |
|
|
Date-Added = {2007-08-02 15:07:04 -0400}, |
52 |
|
|
Date-Modified = {2007-08-02 15:07:04 -0400}, |
53 |
|
|
Doi = {10.1529/biophysj.106.086017}, |
54 |
|
|
Eprint = {http://www.biophysj.org/cgi/reprint/90/11/L83.pdf}, |
55 |
|
|
Journal = {Biophys. J.}, |
56 |
|
|
Number = {11}, |
57 |
|
|
Pages = {L83-85}, |
58 |
|
|
Title = {{Closer Look at Structure of Fully Hydrated Fluid Phase DPPC Bilayers}}, |
59 |
|
|
Url = {http://www.biophysj.org/cgi/content/abstract/90/11/L83}, |
60 |
|
|
Volume = {90}, |
61 |
|
|
Year = {2006}} |
62 |
|
|
|
63 |
|
|
@article{NorbertKucerka04012005, |
64 |
|
|
Abstract = {Quantitative structures of the fully hydrated fluid phases of dimyristoylphosphatidylcholine (DMPC) and dilauroylphosphatidylcholine (DLPC) were obtained at 30{degrees}C. Data for the relative form factors F(qz) for DMPC were obtained using a combination of four methods. 1), Volumetric data provided F(0). 2), Diffuse x-ray scattering from oriented stacks of bilayers provided relative form factors |F(qz)| for high qz, 0.22 < qz < 0.8 A-1. 3), X-ray scattering from extruded unilamellar vesicles with diameter 600 A provided |F(qz)| for low qz, 0.1 < qz < 0.3 A-1. 4), Previous measurements using a liquid crystallographic x-ray method provided |F(2{pi}h/D)| for h = 1 and 2 for a range of nearly fully hydrated D-spacings. The data from method 4 overlap and validate the new unilamellar vesicles data for DMPC, so method 4 is not required for DLPC or future studies. We used hybrid electron density models to obtain structural results from these form factors. Comparison of the model electron density profiles with that of gel phase DMPC provides areas per lipid A, 60.6 {+/-} 0.5 A2 for DMPC and 63.2 {+/-} 0.5 A2 for DLPC. Constraints on the model provided by volume measurements and component volumes obtained from simulations put the electron density profiles {rho}(z) and the corresponding form factors F(qz) on absolute scales. Various thicknesses, such as the hydrophobic thickness and the steric thickness, are obtained and compared to literature values. |
65 |
|
|
}, |
66 |
|
|
Author = {Kucerka, Norbert and Liu, Yufeng and Chu, Nanjun and Petrache, Horia I. and Tristram-Nagle, Stephanie and Nagle, John F.}, |
67 |
|
|
Date-Added = {2007-08-02 15:04:34 -0400}, |
68 |
|
|
Date-Modified = {2007-08-02 15:04:34 -0400}, |
69 |
|
|
Doi = {10.1529/biophysj.104.056606}, |
70 |
|
|
Eprint = {http://www.biophysj.org/cgi/reprint/88/4/2626.pdf}, |
71 |
|
|
Journal = {Biophys. J.}, |
72 |
|
|
Number = {4}, |
73 |
|
|
Pages = {2626-2637}, |
74 |
|
|
Title = {{Structure of Fully Hydrated Fluid Phase DMPC and DLPC Lipid Bilayers Using X-Ray Scattering from Oriented Multilamellar Arrays and from Unilamellar Vesicles}}, |
75 |
|
|
Url = {http://www.biophysj.org/cgi/content/abstract/88/4/2626}, |
76 |
|
|
Volume = {88}, |
77 |
|
|
Year = {2005}} |
78 |
|
|
|
79 |
xsun |
3147 |
@article{Ayton95, |
80 |
gezelter |
3199 |
Author = {G. Ayton and M.~J.~P. Gingras and G.~N. Patey}, |
81 |
|
|
Journal = prl, |
82 |
|
|
Number = 12, |
83 |
|
|
Pages = {2360-2363}, |
84 |
|
|
Title = {Orientational Ordering in Spatially Disordered Dipolar System}, |
85 |
|
|
Volume = 75, |
86 |
|
|
Year = 1995} |
87 |
xsun |
3147 |
|
88 |
|
|
@article{Ayton97, |
89 |
gezelter |
3199 |
Author = {G. Ayton and M. J. P. Gingras and G. N. Patey}, |
90 |
|
|
Journal = pre, |
91 |
|
|
Number = 1, |
92 |
|
|
Pages = {562-570}, |
93 |
|
|
Title = {Ferroelectric and dipolar glass phases of noncrystalline systems}, |
94 |
|
|
Volume = 56, |
95 |
|
|
Year = 1997} |
96 |
xsun |
3147 |
|
97 |
|
|
@article{Katsaras00, |
98 |
gezelter |
3199 |
Author = {J. Katsaras and S. Tristram-Nagle and Y. Liu and R. L. Headrick and E.Fontes and P. C. Mason and J. F. Nagle}, |
99 |
|
|
Journal = pre, |
100 |
|
|
Number = 5, |
101 |
|
|
Pages = {5668-5677}, |
102 |
|
|
Title = {Clarification of the ripple phase of lecithin bilayer using fully hydrated, aligned samples}, |
103 |
|
|
Volume = 61, |
104 |
|
|
Year = 2000} |
105 |
xsun |
3147 |
|
106 |
|
|
@article{Lubensky93, |
107 |
gezelter |
3199 |
Author = {T. C. Lubensky and F. C. MacKintosh}, |
108 |
|
|
Journal = prl, |
109 |
|
|
Number = 10, |
110 |
|
|
Pages = {1565-1568}, |
111 |
|
|
Title = {Theory of ``Ripple'' Phases of Lipid Bilayers}, |
112 |
|
|
Volume = 71, |
113 |
|
|
Year = 1993} |
114 |
xsun |
3147 |
|
115 |
|
|
@article{Sun96, |
116 |
gezelter |
3199 |
Author = {W. J. Sun and S. Tristram-Nagle and R. M. Suter and J. F. Nagle}, |
117 |
|
|
Journal = pnas, |
118 |
|
|
Pages = {7008-7012}, |
119 |
|
|
Title = {Structure of the Ripple Phase in Lecithin Bilayers}, |
120 |
|
|
Volume = 93, |
121 |
|
|
Year = 1996} |
122 |
xsun |
3147 |
|
123 |
|
|
@article{Kaasgaard03, |
124 |
gezelter |
3203 |
Author = {Thomas Kaasgaard and Chad Leidy and John H. Crowe and Ole G. Mouritsen and Kent J{\o}rgensen}, |
125 |
gezelter |
3199 |
Journal = bj, |
126 |
|
|
Number = 1, |
127 |
|
|
Pages = {350-360}, |
128 |
|
|
Title = {Temperature-Controlled Structure and Kinetics of Ripple Phases in One- and Two-Component Supported Lipid Bilayers}, |
129 |
|
|
Volume = 85, |
130 |
|
|
Year = 2003} |
131 |
xsun |
3147 |
|
132 |
|
|
@article{Tao91, |
133 |
gezelter |
3199 |
Author = {R. Tao and J. M. Sun}, |
134 |
|
|
Journal = prl, |
135 |
|
|
Number = 3, |
136 |
|
|
Pages = {398-401}, |
137 |
|
|
Title = {Three-Dimensional Structure of Induced Electrorheological Solid}, |
138 |
|
|
Volume = 67, |
139 |
|
|
Year = 1991} |
140 |
xsun |
3147 |
|
141 |
|
|
@article{Weis92, |
142 |
gezelter |
3199 |
Author = {J. J. Weis and D. Levesque and G. J. Zarragoicoechea}, |
143 |
|
|
Journal = prl, |
144 |
|
|
Number = 6, |
145 |
|
|
Pages = {913-916}, |
146 |
|
|
Title = {Orientational Order in Simple Dipolar Liquid-Crystal Models}, |
147 |
|
|
Volume = 69, |
148 |
|
|
Year = 1992} |
149 |
xsun |
3147 |
|
150 |
|
|
@article{Wei92, |
151 |
gezelter |
3199 |
Author = {Dongqing Wei and G. N. Patey}, |
152 |
|
|
Journal = prl, |
153 |
|
|
Number = 13, |
154 |
|
|
Pages = {2043-2045}, |
155 |
|
|
Title = {Orientational Order in Simple Dipolar Liquids: Computer Simulation of a Ferroeletric Nematic Phase}, |
156 |
|
|
Volume = 68, |
157 |
|
|
Year = 1992} |
158 |
xsun |
3147 |
|
159 |
|
|
@article{Pandit03, |
160 |
gezelter |
3199 |
Author = {Sagar A. Pandit and David Bostick and Max L. Berkowitz}, |
161 |
|
|
Journal = jcp, |
162 |
|
|
Number = 4, |
163 |
|
|
Pages = {2199-2205}, |
164 |
|
|
Title = {An algorithm to describe molecular scale rugged surfaces and its application to the study of a water/lipid bilayer interface}, |
165 |
|
|
Volume = 119, |
166 |
|
|
Year = 2003} |
167 |
xsun |
3147 |
|
168 |
|
|
@article{Luttinger46, |
169 |
gezelter |
3199 |
Author = {J. M. Luttinger and L. Tisza}, |
170 |
|
|
Journal = {Physical Review}, |
171 |
|
|
Number = 11, |
172 |
|
|
Pages = {954-964}, |
173 |
|
|
Title = {Theory of Dipole Interaction in Crystals}, |
174 |
|
|
Volume = 70, |
175 |
|
|
Year = 1946} |
176 |
xsun |
3147 |
|
177 |
|
|
@article{Heimburg00, |
178 |
gezelter |
3199 |
Author = {Thomas Heimburg}, |
179 |
|
|
Journal = bj, |
180 |
|
|
Pages = {1154-1165}, |
181 |
|
|
Title = {A Model for the Lipid Pretransition: Coupling of Ripple Formation with the Chain-Melting Transition}, |
182 |
|
|
Volume = 78, |
183 |
|
|
Year = 2000} |
184 |
xsun |
3147 |
|
185 |
|
|
@article{Goldstein88, |
186 |
gezelter |
3199 |
Author = {Raymond E. Goldstein and Stanislas Leibler}, |
187 |
|
|
Journal = prl, |
188 |
|
|
Number = 19, |
189 |
|
|
Pages = {2213-2216}, |
190 |
|
|
Title = {Model for Lamellar Phases of Interacting Lipid Membranes}, |
191 |
|
|
Volume = 61, |
192 |
|
|
Year = 1988} |
193 |
xsun |
3147 |
|
194 |
|
|
@article{McCullough90, |
195 |
gezelter |
3199 |
Author = {W. Scott McCullough and H. L. Scott}, |
196 |
|
|
Journal = prl, |
197 |
|
|
Number = 7, |
198 |
|
|
Pages = {931-934}, |
199 |
|
|
Title = {Statistical-Mechanial Theory of the Ripple Phase of Lipid Bilayers}, |
200 |
|
|
Volume = 65, |
201 |
|
|
Year = 1990} |
202 |
xsun |
3147 |
|
203 |
|
|
@article{Banerjee02, |
204 |
gezelter |
3199 |
Author = {Srilekha Banerjee}, |
205 |
|
|
Journal = {Physica A}, |
206 |
|
|
Pages = {89-100}, |
207 |
|
|
Title = {Exploring the Ripple Phase of Biomembranes}, |
208 |
|
|
Volume = 308, |
209 |
|
|
Year = 2002} |
210 |
xsun |
3147 |
|
211 |
|
|
@article{Sengupta03, |
212 |
gezelter |
3199 |
Author = {Kheya Sengupta and V. A. Raghunathan and John Katsaras}, |
213 |
|
|
Journal = pre, |
214 |
|
|
Number = 031710, |
215 |
|
|
Pages = {1-12}, |
216 |
|
|
Title = {Structure of the Ripple Phase of Phospholipid Multibilayers}, |
217 |
|
|
Volume = 68, |
218 |
|
|
Year = 2003} |
219 |
xsun |
3147 |
|
220 |
|
|
@article{Mason01, |
221 |
gezelter |
3199 |
Author = {P. C. Mason and J. F. Nagle and R. M. Epand and J. Katsaras}, |
222 |
|
|
Journal = pre, |
223 |
|
|
Number = 030902, |
224 |
|
|
Pages = {1-4}, |
225 |
|
|
Title = {Anomalous Swelling in Phospholipid bilayers is not coupled to the formation of a ripple phase}, |
226 |
|
|
Volume = 63, |
227 |
|
|
Year = 2001} |
228 |
xsun |
3147 |
|
229 |
|
|
@article{Tieleman96, |
230 |
gezelter |
3199 |
Author = {D. P. Tieleman and H. J. C. Berendsen}, |
231 |
|
|
Journal = jcp, |
232 |
|
|
Number = 11, |
233 |
|
|
Pages = {4871-4880}, |
234 |
|
|
Title = {Molecular Dynamics Simulations of a Fully Hydrated Dipalmitoylphosphatidylcholine Bilayer with Different Macroscopic Boundary Conditions and Parameters}, |
235 |
|
|
Volume = 105, |
236 |
|
|
Year = 1996} |
237 |
xsun |
3147 |
|
238 |
|
|
@article{Kubica02, |
239 |
gezelter |
3199 |
Author = {Krystian Kubica}, |
240 |
|
|
Journal = {Computers and Chemistry}, |
241 |
|
|
Pages = {351-356}, |
242 |
|
|
Title = {Computer Simulation studies on significance of Lipid Polar Head Oreintation}, |
243 |
|
|
Volume = 26, |
244 |
|
|
Year = 2002} |
245 |
xsun |
3147 |
|
246 |
|
|
@article{Leidy02, |
247 |
gezelter |
3199 |
Author = {Chad Leidy and Thomas Kaasgaard and John H. Crowe and Ole G. Mouritsen and Kent J\o gensen}, |
248 |
|
|
Journal = bj, |
249 |
|
|
Pages = {2625-2633}, |
250 |
|
|
Title = {Ripples and the Formation of Anisotropic Lipid Domains: Imaging Two-Component Supported Double Bilayers by Atomic Force Microscopy}, |
251 |
|
|
Volume = 83, |
252 |
|
|
Year = 2002} |
253 |
xsun |
3147 |
|
254 |
|
|
@article{Misbah98, |
255 |
gezelter |
3199 |
Author = {C. Misbah and J. Duplat and B. Houchmandzadeh}, |
256 |
|
|
Journal = prl, |
257 |
|
|
Number = 20, |
258 |
|
|
Pages = {4598-4601}, |
259 |
|
|
Title = {Transition to Ripple Phases in Hydrated Amphiphiles}, |
260 |
|
|
Volume = 80, |
261 |
|
|
Year = 1998} |
262 |
xsun |
3147 |
|
263 |
gezelter |
3199 |
@book{Cevc87, |
264 |
|
|
Address = {New York}, |
265 |
|
|
Author = {Gregor Cevc and Derek Marsh}, |
266 |
|
|
Publisher = {Wiley-Interscience}, |
267 |
|
|
Title = {Phospholipid Bilayers}, |
268 |
|
|
Year = 1980} |
269 |
xsun |
3147 |
|
270 |
|
|
@article{Copeland80, |
271 |
gezelter |
3199 |
Author = {B. R. Copeland and H. M. McConnell}, |
272 |
|
|
Journal = {Biochim. Biophys. Acta.}, |
273 |
|
|
Pages = {95-109}, |
274 |
|
|
Title = {The Rippled Structure in Bilayer Membranes of Phosphatidylcholine and Binary Mixture of Phosphatidylcholine and Cholesterol}, |
275 |
|
|
Volume = 599, |
276 |
|
|
Year = 1980} |
277 |
xsun |
3147 |
|
278 |
|
|
@article{Meyer96, |
279 |
gezelter |
3199 |
Author = {H. W. Meyer}, |
280 |
|
|
Journal = {Biochim. Biophys. Acta.}, |
281 |
|
|
Pages = {221-245}, |
282 |
|
|
Title = {Pretansition-Ripples in Bilayers of Dipalmitoylphosphatidylcholine: Undulation or Periodic Segments? A Freeze-Fracture Study}, |
283 |
|
|
Volume = 1302, |
284 |
|
|
Year = 1996} |
285 |
xsun |
3147 |
|
286 |
gezelter |
3199 |
@article{Carlson87, |
287 |
|
|
Author = {J.~M. Carlson and J.~P. Sethna}, |
288 |
|
|
Journal = pra, |
289 |
|
|
Number = 7, |
290 |
|
|
Pages = 3359, |
291 |
|
|
Title = {Theory of ripple phase in hydrated phospholipid bilayers}, |
292 |
|
|
Volume = 36, |
293 |
|
|
Year = 1987} |
294 |
xsun |
3147 |
|
295 |
gezelter |
3199 |
@article{Marder84, |
296 |
|
|
Author = {M. Marder and H.~L. Frisch and J.~S. Langer and H.~M. McConnell}, |
297 |
|
|
Journal = pnas, |
298 |
|
|
Pages = {6559-6561}, |
299 |
|
|
Title = {Theory of the intermediate rippled phase of phospholipid bilayers}, |
300 |
|
|
Volume = 81, |
301 |
|
|
Year = 1984} |
302 |
xsun |
3147 |
|
303 |
gezelter |
3199 |
@article{Bannerjee02, |
304 |
|
|
Author = {S. Bannerjee}, |
305 |
|
|
Journal = {Physica A}, |
306 |
|
|
Pages = {89-100}, |
307 |
|
|
Title = {Exploring the ripple phase of biomembranes}, |
308 |
|
|
Volume = 308, |
309 |
|
|
Year = 2002} |
310 |
xsun |
3147 |
|
311 |
gezelter |
3199 |
@article{deVries05, |
312 |
|
|
Author = {A.~H. de~Vries and S. Yefimov and A.~E. Mark and S.~J. Marrink}, |
313 |
|
|
Journal = pnas, |
314 |
|
|
Number = 15, |
315 |
|
|
Pages = {5392-5396}, |
316 |
|
|
Title = {Molecular structure of the lecithin ripple phase}, |
317 |
|
|
Volume = 102, |
318 |
|
|
Year = 2005} |
319 |
xsun |
3147 |
|
320 |
gezelter |
3199 |
@article{Ayton02, |
321 |
|
|
Author = {G. Ayton and G.~A. Voth}, |
322 |
|
|
Journal = {Biophys. J.}, |
323 |
|
|
Pages = {3357-3370}, |
324 |
|
|
Title = {Bridging Microscopic and Mesoscopic Simulations of Lipid Bilayers}, |
325 |
|
|
Volume = 83, |
326 |
|
|
Year = 2002} |
327 |
xsun |
3147 |
|
328 |
gezelter |
3199 |
@article{Brannigan04b, |
329 |
|
|
Author = {G. Brannigan and A.~C. Tamboli and F.~L.~H. Brown}, |
330 |
|
|
Journal = jcp, |
331 |
|
|
Key = 121, |
332 |
|
|
Pages = {3259-3271}, |
333 |
|
|
Title = {The role of molecular shape in bilayer elasticity and phase behavior}, |
334 |
|
|
Volume = 7, |
335 |
|
|
Year = 2004} |
336 |
xsun |
3147 |
|
337 |
gezelter |
3199 |
@article{Brannigan04a, |
338 |
|
|
Author = {G. Brannigan and F.~L.~H. Brown}, |
339 |
|
|
Journal = jcp, |
340 |
|
|
Number = 2, |
341 |
|
|
Pages = {1059-1071}, |
342 |
|
|
Title = {Solvent-free simulations of fluid membrane bilayers}, |
343 |
|
|
Volume = 120, |
344 |
|
|
Year = 2004} |
345 |
xsun |
3147 |
|
346 |
gezelter |
3199 |
@book{Safran94, |
347 |
|
|
Address = {Reading, MA}, |
348 |
|
|
Author = {S.~A. Safran}, |
349 |
|
|
Publisher = {Addison-Wesley}, |
350 |
|
|
Title = {Statistical Thermodynamics of Surfaces, Interfaces, and Membranes}, |
351 |
|
|
Year = 1994} |
352 |
xsun |
3147 |
|
353 |
gezelter |
3199 |
@article{Tlusty00, |
354 |
|
|
Author = {T. Tlusty and S.~A. Safran}, |
355 |
|
|
Journal = {Science}, |
356 |
|
|
Pages = {1328-1331}, |
357 |
|
|
Title = {Defect-Induced Phase Separation in Dipolar Fluids}, |
358 |
|
|
Volume = 290, |
359 |
|
|
Year = 2000} |
360 |
xsun |
3147 |
|
361 |
gezelter |
3199 |
@article{Teixeira00, |
362 |
|
|
Author = {P~I~C Teixeira and J~M Tavares and M~M Telo da Gama}, |
363 |
|
|
Journal = {J. Phys.: Condens. Matter}, |
364 |
|
|
Pages = {R411-R434}, |
365 |
|
|
Title = {The effect of dipolar forces on the structure and thermodynamics of classical fluids}, |
366 |
|
|
Volume = 12, |
367 |
|
|
Year = 2000} |
368 |
xsun |
3147 |
|
369 |
gezelter |
3199 |
@article{Duncan06, |
370 |
|
|
Author = {Peter D. Duncan and Philip J. Camp}, |
371 |
|
|
Journal = prl, |
372 |
|
|
Pages = 107202, |
373 |
|
|
Title = {Aggregation Kinetics and the Nature of Phase Separation in Two-Dimensional Dipolar Fluids}, |
374 |
|
|
Volume = 97, |
375 |
|
|
Year = 2006} |
376 |
xsun |
3147 |
|
377 |
gezelter |
3199 |
@article{Tavares02, |
378 |
|
|
Author = {J.~M. Tavares and J.~J. Weis and M.~M. Telo da Gama}, |
379 |
|
|
Journal = pre, |
380 |
|
|
Pages = 061201, |
381 |
|
|
Title = {Quasi-two-dimensional dipolar fluid at low densities: Monte Carlo simulations and theory}, |
382 |
|
|
Volume = 65, |
383 |
|
|
Year = 2002} |
384 |
xsun |
3147 |
|
385 |
gezelter |
3199 |
@article{Duncan04, |
386 |
|
|
Author = {Peter D. Duncan and Philip J. Camp}, |
387 |
|
|
Journal = jcp, |
388 |
|
|
Number = 22, |
389 |
|
|
Pages = {11322-11331}, |
390 |
|
|
Title = {Structure and dynamics in monolayer of dipolar spheres}, |
391 |
|
|
Volume = 121, |
392 |
|
|
Year = 2004} |
393 |
xsun |
3147 |
|
394 |
gezelter |
3199 |
@article{Holm05, |
395 |
|
|
Author = {C. Holm and J.-J. Weis}, |
396 |
|
|
Journal = {Curr. Opin. Colloid Interface Sci.}, |
397 |
|
|
Pages = {133-140}, |
398 |
|
|
Title = {The structure of ferrofluids: A status report}, |
399 |
|
|
Volume = 10, |
400 |
|
|
Year = 2005} |
401 |
xsun |
3147 |
|
402 |
gezelter |
3199 |
@article{Jiang04, |
403 |
|
|
Author = {F.~Y. Jiang and Y. Bouret and J.~T. Kindt}, |
404 |
|
|
Journal = {Biophys. J.}, |
405 |
|
|
Pages = {182-192}, |
406 |
|
|
Title = {Molecular Dynamics Simulations of the Lipid Bilayer Edge}, |
407 |
|
|
Volume = 87, |
408 |
|
|
Year = 2004} |
409 |
xsun |
3147 |
|
410 |
gezelter |
3199 |
@article{deJoannis06, |
411 |
|
|
Author = {J. de~Joannis and F.~Y. Jiang and J.~T. Kindt}, |
412 |
|
|
Journal = {Langmuir}, |
413 |
|
|
Pages = {998-1005}, |
414 |
|
|
Title = {Coarse-Grained Model Simulations of Mixed-Lipid Systems: Composition and Line Tension of a Stabilized Bilayer Edge}, |
415 |
|
|
Volume = 22, |
416 |
|
|
Year = 2006} |
417 |
xsun |
3147 |
|
418 |
gezelter |
3199 |
@article{Marland1979, |
419 |
|
|
Author = {L.~G. Marland and D.~D. Betts}, |
420 |
|
|
Journal = prl, |
421 |
|
|
Number = 21, |
422 |
|
|
Pages = {1618-1621}, |
423 |
|
|
Title = {Frustration Effect in Quantum Spin Systems}, |
424 |
|
|
Volume = 43, |
425 |
|
|
Year = 1979} |
426 |
xsun |
3147 |
|
427 |
gezelter |
3199 |
@article{Toulouse1977, |
428 |
|
|
Author = {G. Toulouse}, |
429 |
|
|
Journal = {Commun. Phys.}, |
430 |
|
|
Number = 4, |
431 |
|
|
Pages = {115-119}, |
432 |
|
|
Title = {Theory of Frustration Effect in Spin-Glasses. I.}, |
433 |
|
|
Volume = 2, |
434 |
|
|
Year = 1977} |
435 |
xsun |
3147 |
|
436 |
gezelter |
3199 |
@article{Seifert97, |
437 |
|
|
Author = {Udo Seifert}, |
438 |
|
|
Journal = {Adv. Phys.}, |
439 |
|
|
Number = 1, |
440 |
|
|
Pages = {13-137}, |
441 |
|
|
Title = {Configurations of fluid membranes and vesicles}, |
442 |
|
|
Volume = 46, |
443 |
|
|
Year = 1997} |
444 |
xsun |
3147 |
|
445 |
|
|
@article{Brodka04, |
446 |
|
|
Author = {A. Br\'{o}dka}, |
447 |
|
|
Date-Added = {2006-04-26 09:41:52 -0400}, |
448 |
|
|
Date-Modified = {2006-04-26 09:43:52 -0400}, |
449 |
|
|
Doi = {10.1016/j.cplett.2004.10.086}, |
450 |
|
|
Journal = {Chem. Phys. Lett.}, |
451 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Brodka_PointDipoleSlabEwald_04.pdf}, |
452 |
|
|
Pages = {62-67}, |
453 |
|
|
Title = {Ewald summation method with electrostatic layer correction for interactions of point dipoles in slab geometry}, |
454 |
|
|
Volume = {400}, |
455 |
|
|
Year = {2004}} |
456 |
|
|
|
457 |
|
|
@article{deJoannis02, |
458 |
|
|
Author = {J. {de Joannis} and A. Arnold and C. Holm}, |
459 |
|
|
Date-Added = {2006-04-26 09:40:15 -0400}, |
460 |
|
|
Date-Modified = {2006-04-26 09:45:19 -0400}, |
461 |
gezelter |
3199 |
Doi = {10.1063/1.149195}, |
462 |
xsun |
3147 |
Journal = {J. Chem. Phys.}, |
463 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Joannis_SlabElectrostatics_02.pdf}, |
464 |
|
|
Number = {6}, |
465 |
|
|
Pages = {2503-2512}, |
466 |
|
|
Title = {Electrostatics in periodic slab geometries. II}, |
467 |
|
|
Volume = {117}, |
468 |
|
|
Year = {2002}} |
469 |
|
|
|
470 |
|
|
@article{Kawata01, |
471 |
|
|
Author = {M. Kawata and M. Mikami}, |
472 |
|
|
Date-Added = {2006-04-26 09:38:01 -0400}, |
473 |
|
|
Date-Modified = {2006-04-26 09:40:11 -0400}, |
474 |
|
|
Journal = {Chem. Phys. Lett.}, |
475 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Kawata_Rapid2DEwald_01.pdf}, |
476 |
|
|
Pages = {157-164}, |
477 |
|
|
Title = {Rapid calculation of two-dimensional Ewald summation}, |
478 |
|
|
Volume = {340}, |
479 |
|
|
Year = {2001}} |
480 |
|
|
|
481 |
|
|
@article{Arnold02, |
482 |
|
|
Author = {A. Arnold and J. {de Joannis} and C. Holm}, |
483 |
|
|
Date-Added = {2006-04-26 09:36:09 -0400}, |
484 |
|
|
Date-Modified = {2006-04-26 09:37:52 -0400}, |
485 |
gezelter |
3199 |
Doi = {10.1063/1.149195}, |
486 |
xsun |
3147 |
Journal = {J. Chem. Phys.}, |
487 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Arnold_SlabElectrostatics_02.pdf}, |
488 |
|
|
Number = {6}, |
489 |
|
|
Pages = {2496-2502}, |
490 |
|
|
Title = {Electrostatics in periodic slab geometries. I}, |
491 |
|
|
Volume = {117}, |
492 |
|
|
Year = {2002}} |
493 |
|
|
|
494 |
|
|
@article{Kolafa92, |
495 |
|
|
Author = {J. Kolafa and J.~W. Perram}, |
496 |
|
|
Date-Added = {2006-03-21 09:41:58 -0500}, |
497 |
|
|
Date-Modified = {2006-03-21 09:42:47 -0500}, |
498 |
|
|
Journal = {Mol. Simul.}, |
499 |
|
|
Pages = {351-368}, |
500 |
|
|
Title = {Cutoff Errors in the Ewald. Summation Formulae for Point Charge Systems}, |
501 |
|
|
Volume = {9}, |
502 |
|
|
Year = {1992}} |
503 |
|
|
|
504 |
|
|
@article{Karasawa89, |
505 |
|
|
Author = {N. Karasawa and W.~A. {Goddard III}}, |
506 |
|
|
Date-Added = {2006-03-21 09:11:44 -0500}, |
507 |
|
|
Date-Modified = {2006-03-21 09:13:00 -0500}, |
508 |
|
|
Journal = {J. Phys. Chem.}, |
509 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Karasawa_LatticSumConvergence_89.pdf}, |
510 |
|
|
Pages = {7320-7327}, |
511 |
|
|
Title = {Acceleration of Convergence for Lattice Sums}, |
512 |
|
|
Volume = {93}, |
513 |
|
|
Year = {1989}} |
514 |
|
|
|
515 |
|
|
@article{Rhee89, |
516 |
|
|
Author = {Y.-J. Rhee and J.~W. Halley and J. Hautman and A. Rahman}, |
517 |
|
|
Date-Added = {2006-03-18 20:48:07 -0500}, |
518 |
|
|
Date-Modified = {2006-03-18 20:51:09 -0500}, |
519 |
|
|
Journal = {Phys. Rev. B}, |
520 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Rhee_finiteDimensionEwald_88.pdf}, |
521 |
|
|
Number = {1}, |
522 |
|
|
Pages = {36-42}, |
523 |
|
|
Title = {Ewald methods in molecular dynamics for systems of finite extent in one of three dimensions}, |
524 |
|
|
Volume = {40}, |
525 |
|
|
Year = {1989}} |
526 |
|
|
|
527 |
|
|
@article{Hunenberger99a, |
528 |
|
|
Author = {P.~H. H\"{u}nenberger and J.~A. McCammon}, |
529 |
|
|
Date-Added = {2006-03-18 20:14:24 -0500}, |
530 |
|
|
Date-Modified = {2006-03-18 20:16:01 -0500}, |
531 |
|
|
Journal = {J. Chem. Phys.}, |
532 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Hunenberger_IonSolutionEwaldArtifacts_99.pdf}, |
533 |
|
|
Number = {4}, |
534 |
|
|
Pages = {1856-1872}, |
535 |
|
|
Title = {Ewald artifacts in computer simulations of ionic solvation and ion -- ion interaction: A continuum electrostatics study}, |
536 |
|
|
Volume = {110}, |
537 |
|
|
Year = {1999}} |
538 |
|
|
|
539 |
|
|
@article{Roberts95, |
540 |
|
|
Author = {J.~E. Roberts and J. Schnitker}, |
541 |
|
|
Date-Added = {2006-03-18 20:12:23 -0500}, |
542 |
|
|
Date-Modified = {2006-03-18 20:13:36 -0500}, |
543 |
|
|
Journal = {J. Phys. Chem.}, |
544 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Roberts_BoundryConditionsIonWater_95.pdf}, |
545 |
|
|
Pages = {1322-1331}, |
546 |
|
|
Title = {Boundary Conditions in Sumulations of Aqueous Ionic Solutions: A Systematic Study}, |
547 |
|
|
Volume = {99}, |
548 |
|
|
Year = {1995}} |
549 |
|
|
|
550 |
|
|
@article{Roberts94, |
551 |
|
|
Author = {J.~E. Roberts and J. Schnitker}, |
552 |
|
|
Date-Added = {2006-03-18 20:10:37 -0500}, |
553 |
|
|
Date-Modified = {2006-03-18 20:12:19 -0500}, |
554 |
|
|
Journal = {J. Chem. Phys.}, |
555 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Roberts_IonSolventEwaldProbs_94.pdf}, |
556 |
|
|
Number = {6}, |
557 |
|
|
Pages = {5024-5031}, |
558 |
|
|
Title = {How the unit cell surface charge distriubution affects the energetics of ion-solvent interactions in simulations}, |
559 |
|
|
Volume = {101}, |
560 |
|
|
Year = {1994}} |
561 |
|
|
|
562 |
|
|
@article{Yeh99, |
563 |
|
|
Author = {I.-C. Yeh and M.~L. Berkowitz}, |
564 |
|
|
Date-Added = {2006-03-18 19:24:27 -0500}, |
565 |
|
|
Date-Modified = {2006-03-18 19:26:08 -0500}, |
566 |
|
|
Journal = {J. Chem. Phys.}, |
567 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Yeh_SlabCorrectionEwald_99.pdf}, |
568 |
|
|
Number = {7}, |
569 |
|
|
Pages = {3155-3162}, |
570 |
|
|
Title = {Ewald summation for systems with slab geometry}, |
571 |
|
|
Volume = {111}, |
572 |
|
|
Year = {1999}} |
573 |
|
|
|
574 |
|
|
@article{Parry76, |
575 |
|
|
Author = {D.~E. Parry}, |
576 |
|
|
Date-Added = {2006-03-18 19:11:01 -0500}, |
577 |
|
|
Date-Modified = {2006-03-18 19:14:01 -0500}, |
578 |
|
|
Journal = {Surf. Sci.}, |
579 |
|
|
Pages = {195}, |
580 |
|
|
Title = {Errata: The electrostatic potential in the surface region of an ionic crystal}, |
581 |
|
|
Volume = {54}, |
582 |
|
|
Year = {1976}} |
583 |
|
|
|
584 |
|
|
@article{Parry75, |
585 |
|
|
Author = {D.~E. Parry}, |
586 |
|
|
Date-Added = {2006-03-18 19:08:40 -0500}, |
587 |
|
|
Date-Modified = {2006-03-18 19:16:14 -0500}, |
588 |
|
|
Journal = {Surf. Sci.}, |
589 |
|
|
Pages = {433-440}, |
590 |
|
|
Title = {The electrostatic potential in the surface region of an ionic crystal}, |
591 |
|
|
Volume = {49}, |
592 |
|
|
Year = {1975}} |
593 |
|
|
|
594 |
|
|
@article{deLeeuw79, |
595 |
|
|
Author = {S.~W. {de Leeuw} and J.~W. Perram}, |
596 |
|
|
Date-Added = {2006-03-18 19:05:18 -0500}, |
597 |
|
|
Date-Modified = {2006-03-18 19:07:48 -0500}, |
598 |
|
|
Journal = {Mol. Phys.}, |
599 |
|
|
Pages = {1313-1327}, |
600 |
|
|
Title = {Electrostatic Lattice Sums for Semi-Infinite Lattices}, |
601 |
|
|
Volume = {37}, |
602 |
|
|
Year = {1979}} |
603 |
|
|
|
604 |
|
|
@article{Heyes77, |
605 |
|
|
Author = {D.~M. Heyes and M. Barber and J.~H.~R. Clarke}, |
606 |
|
|
Date-Added = {2006-03-18 19:02:16 -0500}, |
607 |
|
|
Date-Modified = {2006-03-18 19:04:48 -0500}, |
608 |
|
|
Journal = {J. Chem. Soc., Faraday Trans. II}, |
609 |
|
|
Number = {7}, |
610 |
|
|
Pages = {1485-1496}, |
611 |
|
|
Title = {Molecular dynamics computer simulation of surface properties of crystalline potassium chloride}, |
612 |
|
|
Volume = {73}, |
613 |
|
|
Year = {1977}} |
614 |
|
|
|
615 |
|
|
@article{Spohr97, |
616 |
|
|
Author = {E. Spohr}, |
617 |
|
|
Date-Added = {2006-03-18 18:51:02 -0500}, |
618 |
|
|
Date-Modified = {2006-03-18 18:52:21 -0500}, |
619 |
|
|
Journal = {J. Chem. Phys.}, |
620 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Spohr_2DElectrostatics_97.pdf}, |
621 |
|
|
Number = {16}, |
622 |
|
|
Pages = {6342-6348}, |
623 |
|
|
Title = {Effect of electrostatic boundary conditions and system size on the interfacial properties of water and aqueous solutions}, |
624 |
|
|
Volume = {107}, |
625 |
|
|
Year = {1997}} |
626 |
|
|
|
627 |
|
|
@article{Weber00, |
628 |
|
|
Author = {W. Weber and P.~H. H\"{u}nenberger and J.~A. McCammon}, |
629 |
|
|
Date-Added = {2006-03-16 09:49:22 -0500}, |
630 |
|
|
Date-Modified = {2006-03-16 09:51:17 -0500}, |
631 |
|
|
Doi = {10.1021/jp9937757}, |
632 |
|
|
Journal = {J. Phys. Chem. B}, |
633 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/McCammon_ArtificialEwaldPeriodicityMD_00.pdf}, |
634 |
|
|
Number = {15}, |
635 |
|
|
Pages = {3668-3675}, |
636 |
|
|
Title = {Molecular Dynamics Simulations of a Polyalanine Octapeptide under Ewald Boundary Conditions: Influence of Artificial Periodicity on Peptide Conformation}, |
637 |
|
|
Volume = {104}, |
638 |
|
|
Year = {2000}} |
639 |
|
|
|
640 |
|
|
@article{Hunenberger99b, |
641 |
|
|
Author = {P.~H. H\"{u}nenberger and J.~A. McCammon}, |
642 |
|
|
Date-Added = {2006-03-16 09:45:10 -0500}, |
643 |
|
|
Date-Modified = {2006-03-18 20:16:16 -0500}, |
644 |
|
|
Journal = {Biophys. Chem.}, |
645 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/McCammon_ArtificialEwaldPeriodicity_99.pdf}, |
646 |
|
|
Pages = {69-88}, |
647 |
|
|
Title = {Effect of artificial periodicity in simulations of biomolecules under Ewald boundary conditions: a continuum electrostatics study}, |
648 |
|
|
Volume = {78}, |
649 |
|
|
Year = {1999}} |
650 |
|
|
|
651 |
|
|
@article{Petersen95, |
652 |
|
|
Author = {H.~G. Petersen}, |
653 |
|
|
Date-Added = {2006-03-16 08:43:02 -0500}, |
654 |
|
|
Date-Modified = {2006-03-16 08:44:32 -0500}, |
655 |
|
|
Journal = {J. Chem. Phys.}, |
656 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Petersen_AccuracyofPME_95.pdf}, |
657 |
|
|
Month = {September}, |
658 |
|
|
Number = {9}, |
659 |
|
|
Pages = {3668-3679}, |
660 |
|
|
Title = {Accuracy and efficiency of the particle mesh Ewald method}, |
661 |
|
|
Volume = {103}, |
662 |
|
|
Year = {1995}} |
663 |
|
|
|
664 |
|
|
@article{Luty95, |
665 |
|
|
Author = {B.~A. Luty and I.~G. Tironi and W.~F. {van~Gunsteren}}, |
666 |
|
|
Date-Added = {2006-03-16 08:39:13 -0500}, |
667 |
|
|
Date-Modified = {2006-03-16 08:41:15 -0500}, |
668 |
|
|
Journal = {J. Chem. Phys.}, |
669 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Luty_LatticeSumElectrostatics_95.pdf}, |
670 |
|
|
Number = {8}, |
671 |
|
|
Pages = {3014-3021}, |
672 |
|
|
Title = {Lattice-sum methods for calculating electrostatic interactions in molecular simulations}, |
673 |
|
|
Volume = {103}, |
674 |
|
|
Year = {1995}} |
675 |
|
|
|
676 |
|
|
@article{Barker73, |
677 |
|
|
Author = {J.~A. Barker and R.~O. Watts}, |
678 |
|
|
Date-Added = {2006-03-15 18:58:17 -0500}, |
679 |
|
|
Date-Modified = {2006-03-18 11:36:56 -0500}, |
680 |
|
|
Journal = {Mol. Phys.}, |
681 |
|
|
Pages = {789-792}, |
682 |
|
|
Title = {Monte Carlo studies of the dielectric properties of water-like models}, |
683 |
|
|
Volume = {26}, |
684 |
|
|
Year = {1973}} |
685 |
|
|
|
686 |
|
|
@article{Adams79, |
687 |
|
|
Author = {D.~J. Adams and E.~M. Adams and G.~J. Hills}, |
688 |
|
|
Date-Added = {2006-03-15 17:46:36 -0500}, |
689 |
|
|
Date-Modified = {2006-03-15 17:48:04 -0500}, |
690 |
|
|
Journal = {Mol. Phys.}, |
691 |
|
|
Number = {2}, |
692 |
|
|
Pages = {387-400}, |
693 |
|
|
Title = {The computer simulation of polar liquids}, |
694 |
|
|
Volume = {38}, |
695 |
|
|
Year = {1979}} |
696 |
|
|
|
697 |
|
|
@article{Rahman71, |
698 |
|
|
Author = {A. Rahman and F.~H. Stillinger}, |
699 |
|
|
Date-Added = {2006-03-15 17:04:53 -0500}, |
700 |
|
|
Date-Modified = {2006-03-15 17:07:29 -0500}, |
701 |
|
|
Journal = {J. Chem. Phys.}, |
702 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/WaterSimulation/Rahman_MDWater_71.pdf}, |
703 |
|
|
Month = {October}, |
704 |
|
|
Number = {7}, |
705 |
|
|
Pages = {3336-3359}, |
706 |
|
|
Title = {Molecular Dynamics Study of Liquid Water}, |
707 |
|
|
Volume = {55}, |
708 |
|
|
Year = {1971}} |
709 |
|
|
|
710 |
|
|
@article{Andrea83, |
711 |
|
|
Author = {T.~A. Andrea and W.~C. Swope and H.~C. Andersen}, |
712 |
|
|
Date-Added = {2006-03-15 15:16:12 -0500}, |
713 |
|
|
Date-Modified = {2006-03-15 15:18:10 -0500}, |
714 |
|
|
Journal = {J. Chem. Phys.}, |
715 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/WaterSimulation/Andrea_LongRangeForcesInWater_83.pdf}, |
716 |
|
|
Number = {9}, |
717 |
|
|
Pages = {4576-4584}, |
718 |
|
|
Title = {The role of long ranged forces in determining the structure and properties of liquid water}, |
719 |
|
|
Volume = {79}, |
720 |
|
|
Year = {1983}} |
721 |
|
|
|
722 |
|
|
@article{Brush66, |
723 |
|
|
Author = {S.~G. Brush and H.~L. Sahlin and E. Teller}, |
724 |
|
|
Date-Added = {2006-03-13 16:55:39 -0500}, |
725 |
|
|
Date-Modified = {2006-03-13 17:01:15 -0500}, |
726 |
|
|
Journal = {J. Chem. Phys.}, |
727 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Brush_MCEwaldApplication_66.pdf}, |
728 |
|
|
Month = {September}, |
729 |
|
|
Number = {6}, |
730 |
|
|
Pages = {2102-2118}, |
731 |
|
|
Title = {Monte Carlo Study of a One-Component Plasma. I}, |
732 |
|
|
Volume = {45}, |
733 |
|
|
Year = {1966}} |
734 |
|
|
|
735 |
|
|
@article{Ewald21, |
736 |
|
|
Author = {P.~P. Ewald}, |
737 |
|
|
Date-Added = {2006-03-13 13:32:04 -0500}, |
738 |
|
|
Date-Modified = {2006-03-16 22:39:27 -0500}, |
739 |
|
|
Journal = {Ann. Physik}, |
740 |
|
|
Pages = {253-287}, |
741 |
|
|
Title = {Die Berechnung optischer und elektrostatischer Gitterpotential}, |
742 |
|
|
Volume = {64}, |
743 |
|
|
Year = {1921}} |
744 |
|
|
|
745 |
|
|
@article{Jones56, |
746 |
|
|
Author = {R.~E. Jones and D.~H. Templeton}, |
747 |
|
|
Date-Added = {2006-03-13 13:25:58 -0500}, |
748 |
|
|
Date-Modified = {2006-03-13 13:27:15 -0500}, |
749 |
|
|
Journal = {J. Chem. Phys.}, |
750 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Jones_ChargeShapeFunctions_56.pdf}, |
751 |
|
|
Number = {5}, |
752 |
|
|
Pages = {1062-1063}, |
753 |
|
|
Title = {Optimum Atomic Shape for Bertaut Series}, |
754 |
|
|
Volume = {25}, |
755 |
|
|
Year = {1956}} |
756 |
|
|
|
757 |
|
|
@article{Heyes81, |
758 |
|
|
Author = {D.~M. Heyes}, |
759 |
|
|
Date-Added = {2006-03-13 13:12:45 -0500}, |
760 |
|
|
Date-Modified = {2006-03-13 13:14:27 -0500}, |
761 |
|
|
Journal = {J. Chem. Phys.}, |
762 |
|
|
Keywords = {Empty Keywords}, |
763 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Heyes_CoulombChargeSpreading_81.pdf}, |
764 |
|
|
Number = {3}, |
765 |
|
|
Pages = {1924-1929}, |
766 |
|
|
Title = {Electrostatic potentials and fields in infinite point charge lattices}, |
767 |
|
|
Volume = {74}, |
768 |
|
|
Year = {1981}} |
769 |
|
|
|
770 |
|
|
@article{Steinbach94, |
771 |
|
|
Author = {P.~J. Steinbach and B.~R. Brooks}, |
772 |
|
|
Date-Added = {2006-03-12 19:26:45 -0500}, |
773 |
|
|
Date-Modified = {2006-03-12 19:29:43 -0500}, |
774 |
|
|
Doi = {10.1002/jcc.540150702}, |
775 |
|
|
Journal = {J. Comput. Chem.}, |
776 |
|
|
Number = {7}, |
777 |
|
|
Pages = {667-683}, |
778 |
|
|
Title = {New spherical-cutoff methods for long-range forces in macromolecular simulation}, |
779 |
|
|
Volume = {15}, |
780 |
|
|
Year = {1994}} |
781 |
|
|
|
782 |
|
|
@article{deLeeuw80, |
783 |
|
|
Author = {S.~W. {de Leeuw} and J.~W. Perram and E.~R. Smith}, |
784 |
|
|
Date-Added = {2006-03-07 10:26:31 -0500}, |
785 |
|
|
Date-Modified = {2006-03-07 10:30:11 -0500}, |
786 |
|
|
Journal = {Proc. R. Soc. London Ser. A}, |
787 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/deLeeuw_EwaldSum_80.pdf}, |
788 |
|
|
Number = {1752}, |
789 |
|
|
Pages = {27-56}, |
790 |
|
|
Title = {Simulation of Electostatic Systems in Periodic Boundary Conditions. I. Lattice Sums and Dielectric Constants}, |
791 |
|
|
Volume = {373}, |
792 |
|
|
Year = {1980}} |
793 |
|
|
|
794 |
|
|
@article{Essmann95, |
795 |
|
|
Author = {U. Essmann and L. Perera and M.~L. Berkowitz and T. Darden and H. Lee and L.~G. Pedersen}, |
796 |
|
|
Date-Added = {2006-03-05 12:25:25 -0500}, |
797 |
|
|
Date-Modified = {2006-03-23 13:47:48 -0500}, |
798 |
|
|
Journal = {J. Chem. Phys.}, |
799 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Essmann_SmoothPME_95.pdf}, |
800 |
|
|
Number = {19}, |
801 |
|
|
Pages = {8577-8593}, |
802 |
|
|
Title = {A smooth particle mesh Ewald method}, |
803 |
|
|
Volume = {103}, |
804 |
|
|
Year = {1995}} |
805 |
|
|
|
806 |
|
|
@article{Kast03, |
807 |
|
|
Author = {S.~M. Kast and K.~F. Schmidt and B. Schilling}, |
808 |
|
|
Date-Added = {2006-02-18 16:47:26 -0500}, |
809 |
|
|
Date-Modified = {2006-02-18 16:51:25 -0500}, |
810 |
|
|
Journal = {Chem. Phys. Lett.}, |
811 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/WolfApplications/Kast_dampedCoulomb_03.pdf}, |
812 |
|
|
Pages = {398-404}, |
813 |
|
|
Title = {Integral equation theory for correcting truncation errors in molecular simulations}, |
814 |
|
|
Volume = {367}, |
815 |
|
|
Year = {2003}} |
816 |
|
|
|
817 |
|
|
@article{Tobias01, |
818 |
|
|
Author = {D.~J. Tobias}, |
819 |
|
|
Date-Added = {2006-02-15 11:28:58 -0500}, |
820 |
|
|
Date-Modified = {2006-02-15 11:32:16 -0500}, |
821 |
|
|
Journal = {Curr. Opin. Struct. Biol.}, |
822 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Tobias_ElectrostaticsCalculations_01.pdf}, |
823 |
|
|
Pages = {253-261}, |
824 |
|
|
Title = {Electrostatics calculations: recent methodological advances and applications to membranes}, |
825 |
|
|
Volume = {11}, |
826 |
|
|
Year = {2001}} |
827 |
|
|
|
828 |
|
|
@article{Zahn02, |
829 |
|
|
Author = {D. Zahn and B. Schilling and S.~M. Kast}, |
830 |
|
|
Date-Added = {2006-02-15 09:21:27 -0500}, |
831 |
|
|
Date-Modified = {2006-02-15 09:24:07 -0500}, |
832 |
|
|
Journal = {J. Phys. Chem. B}, |
833 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/WolfApplications/Zahn_enhancedWolfH2O_02.pdf}, |
834 |
|
|
Number = {41}, |
835 |
|
|
Pages = {10725-10732}, |
836 |
|
|
Title = {Enhancement of the Wolf Damped Coulomb Potential: Static, Dynamic, and Dielectric Properties of Liquid Water from Molecular Simulation}, |
837 |
|
|
Volume = {106}, |
838 |
|
|
Year = {2002}} |
839 |
|
|
|
840 |
|
|
@article{Wolf99, |
841 |
|
|
Author = {D. Wolf and P. Keblinski and S.~R. Phillpot and J. Eggebrecht}, |
842 |
|
|
Date-Added = {2006-02-15 09:09:39 -0500}, |
843 |
|
|
Date-Modified = {2006-02-15 09:25:30 -0500}, |
844 |
|
|
Journal = {J. Chem. Phys.}, |
845 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Wolf_Potential/Wolf_electroCorr_99.pdf}, |
846 |
|
|
Number = {17}, |
847 |
|
|
Pages = {8255-8282}, |
848 |
|
|
Rating = {0}, |
849 |
|
|
Read = {No}, |
850 |
|
|
Title = {Exact method for the simulation of Coulombic systems by spherically truncated, pairwise}, |
851 |
|
|
Volume = {110}, |
852 |
|
|
Year = {1999}} |
853 |
|
|
|
854 |
|
|
@book{Berne90, |
855 |
|
|
Address = {Malabar, Florida}, |
856 |
|
|
Author = {B.~J. Berne and R. Pecora}, |
857 |
|
|
Publisher = {Robert E. Krieger Publishing Company, Inc.}, |
858 |
|
|
Title = {Dynamic Light Scattering}, |
859 |
|
|
Year = 1990} |
860 |
|
|
|
861 |
|
|
@article{Evans77, |
862 |
|
|
Author = {D.~J. Evans}, |
863 |
|
|
Journal = {Mol. Phys.}, |
864 |
|
|
Pages = {317-325}, |
865 |
|
|
Title = {On the representation of orientation space}, |
866 |
|
|
Volume = 34, |
867 |
|
|
Year = 1977} |
868 |
|
|
|
869 |
|
|
@article{Tuckerman92, |
870 |
|
|
Author = {M. Tuckerman and B.~J. Berne and G.~J. Martyna}, |
871 |
|
|
Journal = jcp, |
872 |
|
|
Pages = {1990-2001}, |
873 |
|
|
Title = {Reversible multiple time scale molecular dynamics}, |
874 |
|
|
Volume = 97, |
875 |
|
|
Year = 1992} |
876 |
|
|
|
877 |
|
|
@book{Hansen86, |
878 |
|
|
Address = {London}, |
879 |
|
|
Author = {J.~P. Hansen and I.~R. McDonald}, |
880 |
|
|
Chapter = 7, |
881 |
|
|
Pages = {199-206}, |
882 |
|
|
Publisher = {Academic Press}, |
883 |
|
|
Title = {Theory of Simple Liquids}, |
884 |
|
|
Year = 1986} |
885 |
|
|
|
886 |
|
|
@article{Angelani98, |
887 |
|
|
Author = {L. Angelani and G. Parisi and G. Ruocco and G. Viliani}, |
888 |
|
|
Journal = prl, |
889 |
|
|
Number = 21, |
890 |
|
|
Pages = {4648-4651}, |
891 |
|
|
Title = {Connected Network of Minima as a Model Glass: Long Time Dynamics}, |
892 |
|
|
Volume = 81, |
893 |
|
|
Year = 1998} |
894 |
|
|
|
895 |
|
|
@article{Stillinger82, |
896 |
|
|
Author = {F.~H. Stillinger and T.~A. Weber}, |
897 |
|
|
Journal = pra, |
898 |
|
|
Number = 2, |
899 |
|
|
Pages = {978-989}, |
900 |
|
|
Title = {Hidden structure in liquids}, |
901 |
|
|
Volume = 25, |
902 |
|
|
Year = 1982} |
903 |
|
|
|
904 |
|
|
@article{Stillinger83, |
905 |
|
|
Author = {F.~H. Stillinger and T.~A. Weber}, |
906 |
|
|
Journal = pra, |
907 |
|
|
Number = 4, |
908 |
|
|
Pages = {2408-2416}, |
909 |
|
|
Title = {Dynamics of structural transitions in liquids}, |
910 |
|
|
Volume = 28, |
911 |
|
|
Year = 1983} |
912 |
|
|
|
913 |
|
|
@article{Weber84, |
914 |
|
|
Author = {T.~A. Weber and F.~H. Stillinger}, |
915 |
|
|
Journal = jcp, |
916 |
|
|
Number = 6, |
917 |
|
|
Pages = {2742-2746}, |
918 |
|
|
Title = {The effect of density on the inherent structure in liquids}, |
919 |
|
|
Volume = 80, |
920 |
|
|
Year = 1984} |
921 |
|
|
|
922 |
|
|
@article{Stillinger85, |
923 |
|
|
Author = {F.~H. Stillinger and T.~A. Weber}, |
924 |
|
|
Journal = jcp, |
925 |
|
|
Number = 9, |
926 |
|
|
Pages = {4767-4775}, |
927 |
|
|
Title = {Inherent structure theory of liquids in the hard-sphere limit}, |
928 |
|
|
Volume = 83, |
929 |
|
|
Year = 1985} |
930 |
|
|
|
931 |
|
|
@article{Stillinger98, |
932 |
|
|
Author = {S. Sastry and P.~G. Debenedetti and F.~H. Stillinger}, |
933 |
|
|
Journal = {Nature}, |
934 |
|
|
Pages = {554-557}, |
935 |
|
|
Title = {Signatures of distinct dynamical regimes in the energy landscape of a glass-forming liquid}, |
936 |
|
|
Volume = 393, |
937 |
|
|
Year = 1998} |
938 |
|
|
|
939 |
|
|
@article{Parkhurst75a, |
940 |
|
|
Author = {H.~J. {Parkhurst, Jr.} and J. Jonas}, |
941 |
|
|
Journal = jcp, |
942 |
|
|
Number = 6, |
943 |
|
|
Pages = {2698-2704}, |
944 |
|
|
Title = {Dense liquids. I. The effect of density and temperature on viscosity of tetramethylsilane and benzene-$\mbox{D}_6$}, |
945 |
|
|
Volume = 63, |
946 |
|
|
Year = 1975} |
947 |
|
|
|
948 |
|
|
@article{Parkhurst75b, |
949 |
|
|
Author = {H.~J. {Parkhurst, Jr.} and J. Jonas}, |
950 |
|
|
Journal = jcp, |
951 |
|
|
Number = 6, |
952 |
|
|
Pages = {2705-2709}, |
953 |
|
|
Title = {Dense liquids. II. The effect of density and temperature on viscosity of tetramethylsilane and benzene}, |
954 |
|
|
Volume = 63, |
955 |
|
|
Year = 1975} |
956 |
|
|
|
957 |
|
|
@article{Forester97, |
958 |
|
|
Author = {T.~R. Forester and W. Smith and J.~H.~R. Clarke}, |
959 |
|
|
Journal = {J. Chem. Soc. - Faraday Transactions}, |
960 |
|
|
Pages = {613-619}, |
961 |
|
|
Title = {Antibiotic activity of valinomycin - Molecular dynamics simulations involving the water/membrane interface}, |
962 |
|
|
Volume = 93, |
963 |
|
|
Year = 1997} |
964 |
|
|
|
965 |
|
|
@article{Tieleman98, |
966 |
|
|
Author = {D.~P. Tieleman and H.~J.~C. Berendsen}, |
967 |
|
|
Journal = {Biophys. J.}, |
968 |
|
|
Pages = {2786-2801}, |
969 |
|
|
Title = {A molecular dynamics study of the pores formed by Escherichia coli OmpF porin in a fully hydrated palmitoyloleoylphosphatidylcholine bilayer}, |
970 |
|
|
Volume = 74, |
971 |
|
|
Year = 1998} |
972 |
|
|
|
973 |
|
|
@article{Cascales98, |
974 |
|
|
Author = {J.~J.~L. Cascales and J.~G.~H. Cifre and J.~G. de~la~Torre}, |
975 |
|
|
Journal = {J. Phys. Chem. B}, |
976 |
|
|
Pages = {625-631}, |
977 |
|
|
Title = {Anaesthetic mechanism on a model biological membrane: A molecular dynamics simulation study}, |
978 |
|
|
Volume = 102, |
979 |
|
|
Year = 1998} |
980 |
|
|
|
981 |
|
|
@article{Bassolino95, |
982 |
|
|
Author = {D. Bassolino and H.~E. Alper and T.~R. Stouch}, |
983 |
|
|
Journal = {J. Am. Chem. Soc.}, |
984 |
|
|
Pages = {4118-4129}, |
985 |
|
|
Title = {MECHANISM OF SOLUTE DIFFUSION THROUGH LIPID BILAYER-MEMBRANES BY MOLECULAR-DYNAMICS SIMULATION}, |
986 |
|
|
Volume = 117, |
987 |
|
|
Year = 1995} |
988 |
|
|
|
989 |
|
|
@article{Alper95, |
990 |
|
|
Author = {H.~E. Alper and T.~R. Stouch}, |
991 |
|
|
Journal = {J. Phys. Chem.}, |
992 |
|
|
Pages = {5724-5731}, |
993 |
|
|
Title = {ORIENTATION AND DIFFUSION OF A DRUG ANALOG IN BIOMEMBRANES - MOLECULAR-DYNAMICS SIMULATIONS}, |
994 |
|
|
Volume = 99, |
995 |
|
|
Year = 1995} |
996 |
|
|
|
997 |
|
|
@article{Sok92, |
998 |
|
|
Author = {R.~M. Sok and H.~J.~C. Berendsen and W.~F. van~Gunsteren}, |
999 |
|
|
Journal = {J. Chem. Phys.}, |
1000 |
|
|
Pages = {4699-4704}, |
1001 |
|
|
Title = {MOLECULAR-DYNAMICS SIMULATION OF THE TRANSPORT OF SMALL MOLECULES ACROSS A POLYMER MEMBRANE}, |
1002 |
|
|
Volume = 96, |
1003 |
|
|
Year = 1992} |
1004 |
|
|
|
1005 |
|
|
@article{Rabani99, |
1006 |
|
|
Author = {E. Rabani and J.~D. Gezelter and B.~J. Berne}, |
1007 |
|
|
Journal = prl, |
1008 |
|
|
Pages = {3649}, |
1009 |
|
|
Title = {Direct Observation of Stretched-Exponential Relaxation in Low-Temperature Lennard-Jones Systems Using the Cage Correlation Function}, |
1010 |
|
|
Volume = 82, |
1011 |
|
|
Year = {1999}} |
1012 |
|
|
|
1013 |
|
|
@article{Rabani97, |
1014 |
|
|
Author = {E. Rabani and J.~D. Gezelter and B.~J. Berne}, |
1015 |
|
|
Journal = {J. Chem. Phys.}, |
1016 |
|
|
Pages = {6867-6876}, |
1017 |
|
|
Title = {Calculating the hopping rate for self-diffusion on rough potential energy surfaces: Cage correlations}, |
1018 |
|
|
Volume = 107, |
1019 |
|
|
Year = 1997} |
1020 |
|
|
|
1021 |
|
|
@article{Gezelter99, |
1022 |
|
|
Author = {J.~D. Gezelter and E. Rabani and B.~J. Berne}, |
1023 |
|
|
Journal = jcp, |
1024 |
|
|
Pages = 3444, |
1025 |
|
|
Title = {Methods for calculating the hopping rate for orientational and spatial diffusion in a molecular liquid: $\mbox{CS}_{2}$}, |
1026 |
|
|
Volume = 110, |
1027 |
|
|
Year = 1999} |
1028 |
|
|
|
1029 |
|
|
@article{Gezelter98, |
1030 |
|
|
Author = {J.~D. Gezelter and E. Rabani and B.~J. Berne}, |
1031 |
|
|
Date-Modified = {2006-02-15 10:18:42 -0500}, |
1032 |
|
|
Journal = jcp, |
1033 |
|
|
Pages = 4695, |
1034 |
|
|
Title = {Response to 'Comment on a Critique of the Instantaneous Normal Mode (INM) Approach to Diffusion'}, |
1035 |
|
|
Volume = 109, |
1036 |
|
|
Year = 1998} |
1037 |
|
|
|
1038 |
|
|
@article{Gezelter97, |
1039 |
|
|
Author = {J.~D. Gezelter and E. Rabani and B.~J. Berne}, |
1040 |
|
|
Journal = jcp, |
1041 |
|
|
Pages = 4618, |
1042 |
|
|
Title = {Can imaginary instantaneous normal mode frequencies predict barriers to self-diffusion?}, |
1043 |
|
|
Volume = 107, |
1044 |
|
|
Year = 1997} |
1045 |
|
|
|
1046 |
|
|
@article{Zwanzig83, |
1047 |
|
|
Author = {R. Zwanzig}, |
1048 |
|
|
Journal = jcp, |
1049 |
|
|
Pages = {4507-4508}, |
1050 |
|
|
Title = {On the relation between self-diffusion and viscosity of liquids}, |
1051 |
|
|
Volume = 79, |
1052 |
|
|
Year = 1983} |
1053 |
|
|
|
1054 |
|
|
@article{Zwanzig88, |
1055 |
|
|
Author = {R. Zwanzig}, |
1056 |
|
|
Journal = {Proc. Natl. Acad. Sci. USA}, |
1057 |
|
|
Pages = 2029, |
1058 |
|
|
Title = {Diffusion in rough potential}, |
1059 |
|
|
Volume = 85, |
1060 |
|
|
Year = 1988} |
1061 |
|
|
|
1062 |
|
|
@article{Stillinger95, |
1063 |
|
|
Author = {F.~H. Stillinger}, |
1064 |
|
|
Journal = {Science}, |
1065 |
|
|
Pages = {1935-1939}, |
1066 |
|
|
Title = {A Topographic View of Supercooled Liquids and Glass Formation}, |
1067 |
|
|
Volume = 267, |
1068 |
|
|
Year = 1995} |
1069 |
|
|
|
1070 |
|
|
@incollection{Angell85, |
1071 |
|
|
Address = {Springfield, VA}, |
1072 |
|
|
Author = {C.~A. Angell}, |
1073 |
|
|
Booktitle = {Relaxations in Complex Systems}, |
1074 |
|
|
Editor = {K.~Ngai and G.~B. Wright}, |
1075 |
|
|
Pages = 1, |
1076 |
|
|
Publisher = {National Technical Information Service, U.S. Department of Commerce}, |
1077 |
|
|
Title = {unknown}, |
1078 |
|
|
Year = 1985} |
1079 |
|
|
|
1080 |
|
|
@article{Bembenek96, |
1081 |
|
|
Author = {S.~D. Bembenek and B.~B. Laird}, |
1082 |
|
|
Journal = jcp, |
1083 |
|
|
Pages = 5199, |
1084 |
|
|
Title = {The role of localization in glasses and supercooled liquids}, |
1085 |
|
|
Volume = 104, |
1086 |
|
|
Year = 1996} |
1087 |
|
|
|
1088 |
|
|
@article{Sun97a, |
1089 |
|
|
Author = {X. Sun and W.~H. Miller}, |
1090 |
|
|
Date-Modified = {2006-02-15 10:33:35 -0500}, |
1091 |
|
|
Journal = jcp, |
1092 |
|
|
Pages = 6346, |
1093 |
|
|
Title = {Semiclassical initial value representation for electronically nonadiabatic molecular dynamics}, |
1094 |
|
|
Volume = 106, |
1095 |
|
|
Year = 1997} |
1096 |
|
|
|
1097 |
|
|
@article{Spath96, |
1098 |
|
|
Author = {B.~W. Spath and W.~H. Miller}, |
1099 |
|
|
Journal = jcp, |
1100 |
|
|
Pages = 95, |
1101 |
|
|
Title = {SEMICLASSICAL CALCULATION OF CUMULATIVE REACTION PROBABILITIES}, |
1102 |
|
|
Volume = 104, |
1103 |
|
|
Year = 1996} |
1104 |
|
|
|
1105 |
|
|
@book{Warshel91, |
1106 |
|
|
Address = {New York}, |
1107 |
|
|
Author = {Arieh Warshel}, |
1108 |
|
|
Publisher = {Wiley}, |
1109 |
|
|
Title = {Computer modeling of chemical reactions in enzymes and solutions}, |
1110 |
|
|
Year = 1991} |
1111 |
|
|
|
1112 |
|
|
@article{Vuilleumier97, |
1113 |
|
|
Author = {Rodolphe Vuilleumier and Daniel Borgis}, |
1114 |
|
|
Journal = jpc, |
1115 |
|
|
Title = {Molecular Dynamics of an excess proton in water using a non-additive valence bond force field}, |
1116 |
|
|
Volume = {in press}, |
1117 |
|
|
Year = 1997} |
1118 |
|
|
|
1119 |
|
|
@article{Kob95a, |
1120 |
|
|
Author = {W. Kob and H.~C. Andersen}, |
1121 |
|
|
Journal = pre, |
1122 |
|
|
Pages = {4626-4641}, |
1123 |
|
|
Title = {Testing mode-coupling theory for a supercooled binary Lennard-Jones mixtures: The van Hove corraltion function}, |
1124 |
|
|
Volume = 51, |
1125 |
|
|
Year = 1995} |
1126 |
|
|
|
1127 |
|
|
@article{Kob95b, |
1128 |
|
|
Author = {W. Kob and H.~C. Andersen}, |
1129 |
|
|
Journal = pre, |
1130 |
|
|
Pages = {4134-4153}, |
1131 |
|
|
Title = {Testing mode-coupling theory for a supercooled binary Lennard-Jones mixtures. II. Intermediate scattering function and dynamic susceptibility}, |
1132 |
|
|
Volume = 52, |
1133 |
|
|
Year = 1995} |
1134 |
|
|
|
1135 |
|
|
@inproceedings{Gotze89, |
1136 |
|
|
Address = {Amsterdam}, |
1137 |
|
|
Author = {W. G{\"{o}}tze}, |
1138 |
|
|
Booktitle = {Liquids, Freezing and Glass Transitions}, |
1139 |
|
|
Editor = {J.~P. Hansen and D. Levesque and J. Zinn-Justin}, |
1140 |
|
|
Pages = {287-503}, |
1141 |
|
|
Publisher = {North-Holland}, |
1142 |
|
|
Title = {Aspects of Structural Glass Transitions}, |
1143 |
|
|
Volume = {I}, |
1144 |
|
|
Year = 1989} |
1145 |
|
|
|
1146 |
|
|
@article{Sun97b, |
1147 |
|
|
Author = {X. Sun and W.~H. Miller}, |
1148 |
|
|
Date-Modified = {2006-02-15 10:33:29 -0500}, |
1149 |
|
|
Journal = jcp, |
1150 |
|
|
Pages = 916, |
1151 |
|
|
Title = {Mixed semiclassical-classical approaches to the dynamics of complex molecular systems}, |
1152 |
|
|
Year = 1997} |
1153 |
|
|
|
1154 |
|
|
@article{Keshavamurthy94, |
1155 |
|
|
Author = {S. Keshavamurthy and W.~H. Miller}, |
1156 |
|
|
Journal = cpl, |
1157 |
|
|
Pages = 189, |
1158 |
|
|
Title = {ivr}, |
1159 |
|
|
Volume = 218, |
1160 |
|
|
Year = 1994} |
1161 |
|
|
|
1162 |
|
|
@article{Billing75, |
1163 |
|
|
Author = {G.~D. Billing}, |
1164 |
|
|
Journal = cpl, |
1165 |
|
|
Pages = 391, |
1166 |
|
|
Title = {ehrenfest}, |
1167 |
|
|
Volume = 30, |
1168 |
|
|
Year = 1975} |
1169 |
|
|
|
1170 |
|
|
@article{Chang90, |
1171 |
|
|
Author = {Y.-T. Chang and W.~H. Miller}, |
1172 |
|
|
Journal = jpc, |
1173 |
|
|
Pages = {5884-5888}, |
1174 |
|
|
Title = {An Empirical Valence Bond Model for Constructing Global Potential Energy Surfaces for Chemical Reactions of Polyatomic Molecular Systems}, |
1175 |
|
|
Volume = 94, |
1176 |
|
|
Year = 1990} |
1177 |
|
|
|
1178 |
|
|
@article{Shor94, |
1179 |
|
|
Author = {P.W. Shor}, |
1180 |
|
|
Journal = {Proceedings of the 35th Annual Symposium on Foundations of Computer Science}, |
1181 |
|
|
Pages = {124-134}, |
1182 |
|
|
Title = {Algorithms for quantum computation: discrete logarithms and factoring}, |
1183 |
|
|
Year = 1994} |
1184 |
|
|
|
1185 |
|
|
@article{Feynman82, |
1186 |
|
|
Author = {R.~P. Feynman}, |
1187 |
|
|
Journal = {Int. J. Theor. Phys.}, |
1188 |
|
|
Pages = {467-488}, |
1189 |
|
|
Title = {Simulating physics with computers}, |
1190 |
|
|
Volume = 21, |
1191 |
|
|
Year = 1982} |
1192 |
|
|
|
1193 |
|
|
@article{Grover97, |
1194 |
|
|
Author = {L.~K. Grover}, |
1195 |
|
|
Journal = prl, |
1196 |
|
|
Pages = {4709-4712}, |
1197 |
|
|
Title = {Quantum computers can search arbitrarily large databases by a single query}, |
1198 |
|
|
Volume = 79, |
1199 |
|
|
Year = 1997} |
1200 |
|
|
|
1201 |
|
|
@article{Chuang98, |
1202 |
|
|
Author = {I. Chuang and N. Gershenfeld and M. Kubinec}, |
1203 |
|
|
Journal = prl, |
1204 |
|
|
Pages = {3408-3411}, |
1205 |
|
|
Title = {Experimental Implementation of Fast Quantum Searching}, |
1206 |
|
|
Volume = 80, |
1207 |
|
|
Year = 1998} |
1208 |
|
|
|
1209 |
|
|
@article{Monroe95, |
1210 |
|
|
Author = {C. Monroe and D.~M. Meekhof and B.~E. King and W.~M. Itano and D.~J. Wineland}, |
1211 |
|
|
Journal = prl, |
1212 |
|
|
Pages = 4714, |
1213 |
|
|
Title = {Demonstration of a fundamental quantum logic gate}, |
1214 |
|
|
Volume = 75, |
1215 |
|
|
Year = 1995} |
1216 |
|
|
|
1217 |
|
|
@article{Lent93, |
1218 |
|
|
Author = {C.~S. Lent and P.~D. Tougaw and W.~Porod and G.~H. Bernstein}, |
1219 |
|
|
Journal = {Nanotechnology}, |
1220 |
|
|
Pages = {49-57}, |
1221 |
|
|
Title = {Quantum Cellular Automata}, |
1222 |
|
|
Volume = 4, |
1223 |
|
|
Year = 1993} |
1224 |
|
|
|
1225 |
|
|
@article{Barenco95, |
1226 |
|
|
Author = {A. Barenco and C.~H. Bennett and R. Cleve and D.~P. DiVincenzo and N. Margolus and P. Shor and T. Sleator and J.~A. Smolin and H. Weinfurter}, |
1227 |
|
|
Journal = {Phys. Rev. A}, |
1228 |
|
|
Pages = {3457-3467}, |
1229 |
|
|
Title = {elementary gates for quantum computation}, |
1230 |
|
|
Volume = 52, |
1231 |
|
|
Year = 1995} |
1232 |
|
|
|
1233 |
|
|
@article{Reinot97, |
1234 |
|
|
Author = {T. Reinot and J.~M. Hayes and G.~J. Small}, |
1235 |
|
|
Date-Modified = {2006-02-15 10:31:21 -0500}, |
1236 |
|
|
Journal = jcp, |
1237 |
|
|
Pages = {457-466}, |
1238 |
|
|
Title = {Electronic dephasing and electron-phonon coupling of aluminum phthalocyanine tetrasulphonate in hyperquenched and annealed glassy films of ethanol and methanol over a broad temperature range}, |
1239 |
|
|
Volume = 106, |
1240 |
|
|
Year = 1997} |
1241 |
|
|
|
1242 |
|
|
@article{Laflamme96, |
1243 |
|
|
Author = {R. Laflamme and C. Miquel and J.~P. Paz and W.~H. Zurek}, |
1244 |
|
|
Journal = prl, |
1245 |
|
|
Pages = 77, |
1246 |
|
|
Title = {A perfect quantum error correcting code: 5 bit code correcting a general 1 qubit error to encode 1 qubit of information}, |
1247 |
|
|
Volume = 98, |
1248 |
|
|
Year = 1996} |
1249 |
|
|
|
1250 |
|
|
@article{Shor95, |
1251 |
|
|
Author = {P.~W. Shor}, |
1252 |
|
|
Journal = {Phys. Rev. A}, |
1253 |
|
|
Pages = {2493-2496}, |
1254 |
|
|
Title = {SCHEME FOR REDUCING DECOHERENCE IN QUANTUM COMPUTER MEMORY}, |
1255 |
|
|
Volume = 52, |
1256 |
|
|
Year = 1995} |
1257 |
|
|
|
1258 |
|
|
@article{Calderbank96, |
1259 |
|
|
Author = {A.~R. Calderbank and P.~W. Shor}, |
1260 |
|
|
Journal = {Phys. Rev. A}, |
1261 |
|
|
Pages = {1098-1105}, |
1262 |
|
|
Title = {Good quantum error-correcting codes exist}, |
1263 |
|
|
Volume = 54, |
1264 |
|
|
Year = 1996} |
1265 |
|
|
|
1266 |
|
|
@article{Steane96, |
1267 |
|
|
Author = {A.~M. Steane}, |
1268 |
|
|
Journal = prl, |
1269 |
|
|
Pages = {793-797}, |
1270 |
|
|
Title = {Error correcting codes in quantum theory}, |
1271 |
|
|
Volume = 77, |
1272 |
|
|
Year = 1996} |
1273 |
|
|
|
1274 |
|
|
@article{Gezelter95, |
1275 |
|
|
Author = {J.~D. Gezelter and W.~H. Miller}, |
1276 |
|
|
Journal = jcp, |
1277 |
|
|
Pages = {7868-7876}, |
1278 |
|
|
Title = {RESONANT FEATURES IN THE ENERGY-DEPENDENCE OF THE RATE OF KETENE ISOMERIZATION}, |
1279 |
|
|
Volume = 103, |
1280 |
|
|
Year = 1995} |
1281 |
|
|
|
1282 |
|
|
@article{Chakrabarti92, |
1283 |
|
|
Author = {A.~C. Chakrabarti and D.~W. Deamer}, |
1284 |
|
|
Journal = {Biochimica et Biophysica Acta}, |
1285 |
|
|
Pages = {171-177}, |
1286 |
|
|
Title = {PERMEABILITY OF LIPID BILAYERS TO AMINO-ACIDS AND PHOSPHATE}, |
1287 |
|
|
Volume = 1111, |
1288 |
|
|
Year = 1992} |
1289 |
|
|
|
1290 |
|
|
@article{Paula96, |
1291 |
|
|
Author = {S. Paula and A.~G. Volkov and A.~N. VanHoek and T.~H. Haines and D.~W. Deamer}, |
1292 |
|
|
Journal = {Biophys. J.}, |
1293 |
|
|
Pages = {339-348}, |
1294 |
|
|
Title = {Permeation of protons, potassium ions, and small polar molecules through phospholipid bilayers as a function of membrane thickness}, |
1295 |
|
|
Volume = 70, |
1296 |
|
|
Year = 1996} |
1297 |
|
|
|
1298 |
|
|
@article{Little96, |
1299 |
|
|
Author = {H.~J. Little}, |
1300 |
|
|
Journal = {Pharmacology \& Therapeutics}, |
1301 |
|
|
Pages = {37-58}, |
1302 |
|
|
Title = {How has molecular pharmacology contributed to our understanding of the mechanism(s) of general anesthesia?}, |
1303 |
|
|
Volume = 69, |
1304 |
|
|
Year = 1996} |
1305 |
|
|
|
1306 |
|
|
@article{McKinnon92, |
1307 |
|
|
Author = {S.~J. McKinnon and S.~L. Whittenburg and B. Brooks}, |
1308 |
|
|
Journal = jpc, |
1309 |
|
|
Pages = {10497-10506}, |
1310 |
|
|
Title = {Nonequilibrium Molecular Dynamics Simulation of Oxygen Diffusion through Hexadecane Monolayers with Varying Concentrations of Cholesterol}, |
1311 |
|
|
Volume = 96, |
1312 |
|
|
Year = 1992} |
1313 |
|
|
|
1314 |
|
|
@article{Venable93, |
1315 |
|
|
Author = {R.~M. Venable and Y. Zhang and B.~J. Hardy and R.~W. Pastor}, |
1316 |
|
|
Journal = {Science}, |
1317 |
|
|
Pages = {223-226}, |
1318 |
|
|
Title = {Molecular Dynamics Simulations of a Lipid Bilayer and of Hexadecane: An Investigation of Membrane Fluidity}, |
1319 |
|
|
Volume = 262, |
1320 |
|
|
Year = 1993} |
1321 |
|
|
|
1322 |
|
|
@article{Essmann99, |
1323 |
|
|
Author = {U. Essmann and M.~L. Berkowitz}, |
1324 |
|
|
Journal = {Biophys. J.}, |
1325 |
|
|
Pages = {2081-2089}, |
1326 |
|
|
Title = {Dynamical properties of phospholipid bilayers from computer simulation}, |
1327 |
|
|
Volume = 76, |
1328 |
|
|
Year = 1999} |
1329 |
|
|
|
1330 |
|
|
@article{Tu98, |
1331 |
|
|
Author = {K.~C. Tu and M. Tarek and M.~L. Klein and D. Scharf}, |
1332 |
|
|
Journal = {Biophys. J.}, |
1333 |
|
|
Pages = {2123-2134}, |
1334 |
|
|
Title = {Effects of anesthetics on the structure of a phospholipid bilayer: Molecular dynamics investigation of halothane in the hydrated liquid crystal phase of dipalmitoylphosphatidylcholine}, |
1335 |
|
|
Volume = 75, |
1336 |
|
|
Year = 1998} |
1337 |
|
|
|
1338 |
|
|
@article{Pomes96, |
1339 |
|
|
Author = {R. Pomes and B. Roux}, |
1340 |
|
|
Journal = {Biophys. J.}, |
1341 |
|
|
Pages = {19-39}, |
1342 |
|
|
Title = {Structure and dynamics of a proton wire: A theoretical study of H+ translocation along the single-file water chain in the gramicidin a channel}, |
1343 |
|
|
Volume = 71, |
1344 |
|
|
Year = 1996} |
1345 |
|
|
|
1346 |
|
|
@article{Duwez60, |
1347 |
|
|
Author = {P. Duwez and R.~H. Willens and W. {Klement~Jr.}}, |
1348 |
|
|
Journal = {J. Appl. Phys.}, |
1349 |
|
|
Pages = {1136-1137}, |
1350 |
|
|
Title = {Continuous Series of Metastable Solid Solutions in Silver-Copper Alloys}, |
1351 |
|
|
Volume = 31, |
1352 |
|
|
Year = 1960} |
1353 |
|
|
|
1354 |
|
|
@article{Peker93, |
1355 |
|
|
Author = {A. Peker and W.~L. Johnson}, |
1356 |
|
|
Journal = {Appl. Phys. Lett.}, |
1357 |
|
|
Pages = {2342-2344}, |
1358 |
|
|
Title = {A highly processable metallic-glass - $\mbox{Zr}_{41.2}\mbox{Ti}_{13.8}\mbox{Cu}_{12.5}\mbox{Ni}_{10.0}\mbox{Be}_{22.5}$}, |
1359 |
|
|
Volume = 63, |
1360 |
|
|
Year = 1993} |
1361 |
|
|
|
1362 |
|
|
@article{ChoiYim97, |
1363 |
|
|
Author = {H. Choi-Yim and W.~L. Johnson}, |
1364 |
|
|
Journal = {Appl. Phys. Lett.}, |
1365 |
|
|
Pages = {3808-3810}, |
1366 |
|
|
Title = {Bulk metallic glass matrix composites}, |
1367 |
|
|
Volume = 71, |
1368 |
|
|
Year = 1997} |
1369 |
|
|
|
1370 |
|
|
@article{Heller93, |
1371 |
|
|
Author = {H. Heller and M. Schaefer and K. Schulten}, |
1372 |
|
|
Journal = jpc, |
1373 |
|
|
Pages = {8343-8360}, |
1374 |
|
|
Title = {MOLECULAR DYNAMICS SIMULATION OF A BILAYER OF 200 LIPIDS IN THE GEL AND IN THE LIQUID-CRYSTAL PHASES}, |
1375 |
|
|
Volume = 97, |
1376 |
|
|
Year = 1993} |
1377 |
|
|
|
1378 |
|
|
@article{Kushick76, |
1379 |
|
|
Author = {J. Kushick and B.~J. Berne}, |
1380 |
|
|
Journal = jcp, |
1381 |
|
|
Pages = {1362-1367}, |
1382 |
|
|
Title = {Computer Simulation of anisotropic molecular fluids}, |
1383 |
|
|
Volume = 64, |
1384 |
|
|
Year = 1976} |
1385 |
|
|
|
1386 |
|
|
@article{Berardi96, |
1387 |
|
|
Author = {R. Berardi and S. Orlandi and C Zannoni}, |
1388 |
|
|
Journal = cpl, |
1389 |
|
|
Pages = {357-362}, |
1390 |
|
|
Title = {Antiphase structures in polar smectic liquid crystals and their molecular origin}, |
1391 |
|
|
Volume = 261, |
1392 |
|
|
Year = 1996} |
1393 |
|
|
|
1394 |
|
|
@article{Berardi99, |
1395 |
|
|
Author = {R. Berardi and S. Orlandi and C. Zannoni}, |
1396 |
|
|
Journal = {Int. J. Mod. Phys. C}, |
1397 |
|
|
Pages = {477-484}, |
1398 |
|
|
Title = {Monte Carlo simulations of rod-like Gay-Berne mesogens with transverse dipoles}, |
1399 |
|
|
Volume = 10, |
1400 |
|
|
Year = 1999} |
1401 |
|
|
|
1402 |
|
|
@article{Pasterny00, |
1403 |
|
|
Author = {K. Pasterny and E. Gwozdz and A. Brodka}, |
1404 |
|
|
Date-Modified = {2006-02-15 10:29:47 -0500}, |
1405 |
|
|
Journal = {J. Mol. Liq.}, |
1406 |
|
|
Pages = {173-184}, |
1407 |
|
|
Title = {Properties of a model liquid crystal: Polar Gay-Berne particles}, |
1408 |
|
|
Volume = 85, |
1409 |
|
|
Year = 2000} |
1410 |
|
|
|
1411 |
|
|
@article{Jorgensen83, |
1412 |
|
|
Author = {W.~L. Jorgensen and J. Chandrasekhar and J.~D. Madura and R.~W. Impey and M.~L. Klein}, |
1413 |
|
|
Journal = jcp, |
1414 |
|
|
Pages = {926-935}, |
1415 |
|
|
Title = {COMPARISON OF SIMPLE POTENTIAL FUNCTIONS FOR SIMULATING LIQUID WATER}, |
1416 |
|
|
Volume = 79, |
1417 |
|
|
Year = 1983} |
1418 |
|
|
|
1419 |
|
|
@article{Berardi98, |
1420 |
|
|
Author = {R. Berardi and C. Fava and C. Zannoni}, |
1421 |
|
|
Journal = cpl, |
1422 |
|
|
Pages = {8-14}, |
1423 |
|
|
Title = {A Gay-Berne potential for dissimilar biaxial particles}, |
1424 |
|
|
Volume = 297, |
1425 |
|
|
Year = 1998} |
1426 |
|
|
|
1427 |
|
|
@article{Luckhurst90, |
1428 |
|
|
Author = {G.~R. Luckhurst and R.~A. Stephens and R.~W. Phippen}, |
1429 |
|
|
Journal = {Liquid Crystals}, |
1430 |
|
|
Pages = {451-464}, |
1431 |
|
|
Title = {Computer simulation studies of anisotropic systems {XIX}. Mesophases formed by the Gay-Berne model mesogen}, |
1432 |
|
|
Volume = 8, |
1433 |
|
|
Year = 1990} |
1434 |
|
|
|
1435 |
|
|
@article{Gay81, |
1436 |
|
|
Author = {J.~G. Gay and B.~J. Berne}, |
1437 |
|
|
Journal = jcp, |
1438 |
|
|
Pages = {3316-3319}, |
1439 |
|
|
Title = {MODIFICATION OF THE OVERLAP POTENTIAL TO MIMIC A LINEAR SITE-SITE POTENTIAL}, |
1440 |
|
|
Volume = 74, |
1441 |
|
|
Year = 1981} |
1442 |
|
|
|
1443 |
|
|
@article{Berne72, |
1444 |
|
|
Author = {B.~J. Berne and P. Pechukas}, |
1445 |
|
|
Journal = jcp, |
1446 |
|
|
Pages = {4213-4216}, |
1447 |
|
|
Title = {Gaussian Model Potentials for Molecular Interactions}, |
1448 |
|
|
Volume = 56, |
1449 |
|
|
Year = 1972} |
1450 |
|
|
|
1451 |
|
|
@article{Perram96, |
1452 |
|
|
Author = {J.~W. Perram and J. Rasmussen and E. Praestgaard and J.~L. Lebowitz}, |
1453 |
|
|
Journal = pre, |
1454 |
|
|
Pages = {6565-6572}, |
1455 |
|
|
Title = {Ellipsoid contact potential: Theory and relation to overlap potentials}, |
1456 |
|
|
Volume = 54, |
1457 |
|
|
Year = 1996} |
1458 |
|
|
|
1459 |
|
|
@article{Cornell95, |
1460 |
|
|
Author = {W.~D. Cornell and P. Cieplak and C.~I. Bayly and I.~R. Gould and K.~M. {Merz, Jr.} and D.~M. Ferguson and D.~C. Spellmeyer and T. Fox and J.~W. Caldwell and P.~A. Kollman}, |
1461 |
|
|
Journal = jacs, |
1462 |
|
|
Pages = {5179-5197}, |
1463 |
|
|
Title = {A second generation force field for the simulation of proteins and nucleic acids}, |
1464 |
|
|
Volume = 117, |
1465 |
|
|
Year = 1995} |
1466 |
|
|
|
1467 |
|
|
@article{Brooks83, |
1468 |
|
|
Author = {B.~R. Brooks and R.~E. Bruccoleri and B.~D. Olafson and D.~J. States and S. Swaminathan and M. Karplus}, |
1469 |
|
|
Journal = {J. Comp. Chem.}, |
1470 |
|
|
Pages = {187-217}, |
1471 |
|
|
Title = {{\sc charmm}: A Program for Macromolecular Energy, Minimization, and Dynamics Calculations}, |
1472 |
|
|
Volume = 4, |
1473 |
|
|
Year = 1983} |
1474 |
|
|
|
1475 |
|
|
@incollection{MacKerell98, |
1476 |
|
|
Address = {New York}, |
1477 |
|
|
Author = {A.~D. {MacKerell, Jr.} and B. Brooks and C.~L. {Brooks III} and L. Nilsson and B. Roux and Y. Won and and M. Karplus}, |
1478 |
|
|
Booktitle = {The Encyclopedia of Computational Chemistry}, |
1479 |
|
|
Editor = {P.~v.~R. {Schleyer, {\it et al.}}}, |
1480 |
|
|
Pages = {271-277}, |
1481 |
|
|
Publisher = {John Wiley \& Sons}, |
1482 |
|
|
Title = {{\sc charmm}: The Energy Function and Its Parameterization with an Overview of the Program}, |
1483 |
|
|
Volume = 1, |
1484 |
|
|
Year = 1998} |
1485 |
|
|
|
1486 |
|
|
@incollection{Jorgensen98a, |
1487 |
|
|
Address = {New York}, |
1488 |
|
|
Author = {W.~L. Jorgensen}, |
1489 |
|
|
Booktitle = {The Encyclopedia of Computational Chemistry}, |
1490 |
|
|
Date-Modified = {2006-02-15 10:21:45 -0500}, |
1491 |
|
|
Editor = {P.~v.~R. {Schleyer, {\it et al.}}}, |
1492 |
|
|
Pages = {1986-1989}, |
1493 |
|
|
Publisher = {John Wiley \& Sons}, |
1494 |
|
|
Title = {OPLS Force Fields}, |
1495 |
|
|
Volume = 3, |
1496 |
|
|
Year = 1998} |
1497 |
|
|
|
1498 |
|
|
@article{Rabani00, |
1499 |
|
|
Author = {E. Rabani and J.~D. Gezelter and B.~J. Berne}, |
1500 |
|
|
Date-Modified = {2006-02-15 10:30:55 -0500}, |
1501 |
|
|
Journal = prl, |
1502 |
|
|
Pages = 467, |
1503 |
|
|
Title = {Reply to `Comment on ``Direct Observation of Stretched-Exponential Relaxation in Low-Temperature Lennard-Jones Systems Using th eCage Correlation Function'' '}, |
1504 |
|
|
Volume = 85, |
1505 |
|
|
Year = 2000} |
1506 |
|
|
|
1507 |
|
|
@article{Janiak79, |
1508 |
|
|
Author = {M.~J. Janiak and D.~M. Small and G.~G. Shipley}, |
1509 |
|
|
Journal = {J. Biol. Chem.}, |
1510 |
|
|
Pages = {6068-6078}, |
1511 |
|
|
Title = {Temperature and Compositional Dependence of the Structure of Hydrated Dimyristoyl Lecithin}, |
1512 |
|
|
Volume = 254, |
1513 |
|
|
Year = 1979} |
1514 |
|
|
|
1515 |
|
|
@book{Tobias90, |
1516 |
|
|
Address = {Tucson}, |
1517 |
|
|
Author = {Sheila Tobias}, |
1518 |
|
|
Publisher = {Research Corp.}, |
1519 |
|
|
Title = {They're not Dumb. They're Different: Stalking the Second Tier}, |
1520 |
|
|
Year = 1990} |
1521 |
|
|
|
1522 |
|
|
@article{Mazur92, |
1523 |
|
|
Author = {E. Mazur}, |
1524 |
|
|
Journal = {Optics and Photonics News}, |
1525 |
|
|
Pages = 38, |
1526 |
|
|
Title = {Qualitative vs. Quantititative Thinking: Are we teaching the right thing?}, |
1527 |
|
|
Volume = 3, |
1528 |
|
|
Year = 1992} |
1529 |
|
|
|
1530 |
|
|
@book{Mazur97, |
1531 |
|
|
Address = {New Jersey}, |
1532 |
|
|
Author = {Eric Mazur}, |
1533 |
|
|
Publisher = {Prentice Hall}, |
1534 |
|
|
Title = {Peer Instruction: A User's Manual}, |
1535 |
|
|
Year = 1997} |
1536 |
|
|
|
1537 |
|
|
@article{Wigner55, |
1538 |
|
|
Author = {E.~P. Wigner}, |
1539 |
|
|
Journal = {Annals of Mathematics}, |
1540 |
|
|
Pages = {548-564}, |
1541 |
|
|
Title = {Characteristic Vectors of Bordered Matrices with Infinite Dimensions}, |
1542 |
|
|
Volume = 62, |
1543 |
|
|
Year = 1955} |
1544 |
|
|
|
1545 |
|
|
@article{Gaukel98, |
1546 |
|
|
Author = {C. Gaukel and H.~R. Schober}, |
1547 |
|
|
Journal = {Solid State Comm.}, |
1548 |
|
|
Pages = {1-5}, |
1549 |
|
|
Title = {Diffusion Mechanisms in under-cooled Binary Metal Liquids of $\mbox{Zr}_{67}\mbox{Cu}_{33}$}, |
1550 |
|
|
Volume = 107, |
1551 |
|
|
Year = 1998} |
1552 |
|
|
|
1553 |
|
|
@article{Qi99, |
1554 |
|
|
Author = {Y. Qi and T. \c{C}a\v{g}in and Y. Kimura and W.~A. {Goddard III}}, |
1555 |
|
|
Journal = prb, |
1556 |
|
|
Number = 5, |
1557 |
|
|
Pages = {3527-3533}, |
1558 |
|
|
Title = {Molecular-dynamics simulations of glass formation and crystallization in binary liquid metals: $\mbox{Cu-Ag}$ and $\mbox{Cu-Ni}$}, |
1559 |
|
|
Volume = 59, |
1560 |
|
|
Year = 1999} |
1561 |
|
|
|
1562 |
|
|
@article{Khorunzhy97, |
1563 |
|
|
Author = {A. Khorunzhy and G.~J. Rodgers}, |
1564 |
|
|
Journal = {J. Math. Phys.}, |
1565 |
|
|
Pages = {3300-3320}, |
1566 |
|
|
Title = {Eigenvalue distribution of large dilute random matrices}, |
1567 |
|
|
Volume = 38, |
1568 |
|
|
Year = 1997} |
1569 |
|
|
|
1570 |
|
|
@article{Rodgers88, |
1571 |
|
|
Author = {G.~J. Rodgers and A. Bray}, |
1572 |
|
|
Journal = {Phys. Rev. B}, |
1573 |
|
|
Pages = 355703562, |
1574 |
|
|
Title = {Density of States of a Sparse Random Matrix}, |
1575 |
|
|
Volume = 37, |
1576 |
|
|
Year = 1988} |
1577 |
|
|
|
1578 |
|
|
@article{Rodgers90, |
1579 |
|
|
Author = {G.~J. Rodgers and C. {De Dominicis}}, |
1580 |
|
|
Journal = {J. Phys. A: Math. Gen.}, |
1581 |
|
|
Pages = {1567-1573}, |
1582 |
|
|
Title = {Density of states of sparse random matrices}, |
1583 |
|
|
Volume = 23, |
1584 |
|
|
Year = 1990} |
1585 |
|
|
|
1586 |
|
|
@inproceedings{Barker80, |
1587 |
|
|
Author = {J.~A. Barker}, |
1588 |
|
|
Booktitle = {The problem of long-range forces in the computer simulation of condensed matter}, |
1589 |
|
|
Editor = {D. Ceperley}, |
1590 |
|
|
Pages = {45-6}, |
1591 |
|
|
Series = {NRCC Workshop Proceedings}, |
1592 |
|
|
Title = {Reaction field method for polar fluids}, |
1593 |
|
|
Volume = 9, |
1594 |
|
|
Year = 1980} |
1595 |
|
|
|
1596 |
|
|
@article{Smith82, |
1597 |
|
|
Author = {W. Smith}, |
1598 |
|
|
Journal = {CCP5 Quarterly}, |
1599 |
|
|
Pages = {13-25}, |
1600 |
|
|
Title = {Point multipoles in the Ewald summation}, |
1601 |
|
|
Volume = 4, |
1602 |
|
|
Year = 1982} |
1603 |
|
|
|
1604 |
|
|
@article{Daw84, |
1605 |
|
|
Author = {M.~S. Daw and M.~I. Baskes}, |
1606 |
|
|
Journal = prb, |
1607 |
|
|
Number = 12, |
1608 |
|
|
Pages = {6443-6453}, |
1609 |
|
|
Title = {Embedded-atom method: Derivation and application to impurities, surfaces, and other defects in metals}, |
1610 |
|
|
Volume = 29, |
1611 |
|
|
Year = 1984} |
1612 |
|
|
|
1613 |
|
|
@article{Sutton90, |
1614 |
|
|
Author = {A.~P. Sutton and J. Chen}, |
1615 |
|
|
Date-Modified = {2006-02-15 10:33:48 -0500}, |
1616 |
|
|
Journal = {Phil. Mag. Lett.}, |
1617 |
|
|
Pages = {139-146}, |
1618 |
|
|
Title = {Long-Range $\mbox{Finnis Sinclair}$ Potentials}, |
1619 |
|
|
Volume = 61, |
1620 |
|
|
Year = 1990} |
1621 |
|
|
|
1622 |
|
|
@article{Lu97, |
1623 |
|
|
Author = {J. Lu and J.~A. Szpunar}, |
1624 |
|
|
Journal = {Phil. Mag. A}, |
1625 |
|
|
Pages = {1057-1066}, |
1626 |
|
|
Title = {Applications of the embedded-atom method to glass formation and crystallization of liquid and glass transition-metal nickel}, |
1627 |
|
|
Volume = {75}, |
1628 |
|
|
Year = {1997}} |
1629 |
|
|
|
1630 |
|
|
@article{Shlesinger99, |
1631 |
|
|
Author = {M.~F. Shlesinger and J. Klafter and G. Zumofen}, |
1632 |
|
|
Journal = {Am. J. Phys.}, |
1633 |
|
|
Pages = {1253-1259}, |
1634 |
|
|
Title = {Above, below, and beyond Brownian motion}, |
1635 |
|
|
Volume = 67, |
1636 |
|
|
Year = 1999} |
1637 |
|
|
|
1638 |
|
|
@article{Klafter96, |
1639 |
|
|
Author = {J. Klafter and M. Shlesinger and G. Zumofen}, |
1640 |
|
|
Journal = {Physics Today}, |
1641 |
|
|
Pages = {33-39}, |
1642 |
|
|
Title = {Beyond Brownian Motion}, |
1643 |
|
|
Volume = 49, |
1644 |
|
|
Year = 1996} |
1645 |
|
|
|
1646 |
|
|
@article{Blumen83, |
1647 |
|
|
Author = {A. Blumen and J. Klafter and G. Zumofen}, |
1648 |
|
|
Journal = {Phys. Rev. B}, |
1649 |
|
|
Pages = {3429-3435}, |
1650 |
|
|
Title = {Recombination in amorphous materials as a continuous-time random-walk problem}, |
1651 |
|
|
Volume = 27, |
1652 |
|
|
Year = 1983} |
1653 |
|
|
|
1654 |
|
|
@article{Klafter94, |
1655 |
|
|
Author = {J. Klafter and G. Zumofen}, |
1656 |
|
|
Journal = jpc, |
1657 |
|
|
Pages = {7366-7370}, |
1658 |
|
|
Title = {Probability Distributions for Continuous-Time Random Walks with Long Tails}, |
1659 |
|
|
Volume = 98, |
1660 |
|
|
Year = 1994} |
1661 |
|
|
|
1662 |
|
|
@article{Dzugutov92, |
1663 |
|
|
Author = {M. Dzugutov}, |
1664 |
|
|
Journal = pra, |
1665 |
|
|
Pages = {R2984-R2987}, |
1666 |
|
|
Title = {Glass formation in a simple monatomic liquid with icosahedral inherent local order}, |
1667 |
|
|
Volume = 46, |
1668 |
|
|
Year = 1992} |
1669 |
|
|
|
1670 |
|
|
@article{Moore94, |
1671 |
|
|
Author = {P. Moore and T. Keyes}, |
1672 |
|
|
Journal = jcp, |
1673 |
|
|
Pages = 6709, |
1674 |
|
|
Title = {Normal Mode Analysis of Liquid $\mbox{CS}_2$: Velocity Correlation Functions and Self-Diffusion Constants}, |
1675 |
|
|
Volume = 100, |
1676 |
|
|
Year = 1994} |
1677 |
|
|
|
1678 |
|
|
@article{Seeley89, |
1679 |
|
|
Author = {G. Seeley and T. Keyes}, |
1680 |
|
|
Journal = jcp, |
1681 |
|
|
Pages = {5581-5586}, |
1682 |
|
|
Title = {Normal-mode analysis of liquid-state dynamics}, |
1683 |
|
|
Volume = 91, |
1684 |
|
|
Year = 1989} |
1685 |
|
|
|
1686 |
|
|
@article{Madan90, |
1687 |
|
|
Author = {B. Madan and T. Keyes and G. Seeley}, |
1688 |
|
|
Journal = jcp, |
1689 |
|
|
Pages = {7565-7569}, |
1690 |
|
|
Title = {Diffusion in supercooled liquids via normal mode analysis}, |
1691 |
|
|
Volume = 92, |
1692 |
|
|
Year = 1990} |
1693 |
|
|
|
1694 |
|
|
@article{Madan91, |
1695 |
|
|
Author = {B. Madan and T. Keyes and G. Seeley}, |
1696 |
|
|
Journal = jcp, |
1697 |
|
|
Pages = {6762-6769}, |
1698 |
|
|
Title = {Normal mode analysis of the velocity correlation function in supercooled liquids}, |
1699 |
|
|
Volume = 94, |
1700 |
|
|
Year = 1991} |
1701 |
|
|
|
1702 |
|
|
@article{Buchner92, |
1703 |
|
|
Author = {M. Buchner, B.~M. Ladanyi and R.~M. Stratt}, |
1704 |
|
|
Journal = jcp, |
1705 |
|
|
Pages = {8522-8535}, |
1706 |
|
|
Title = {The short-time dynamics of molecular liquids. Instantaneous-normal-mode theory}, |
1707 |
|
|
Volume = 97, |
1708 |
|
|
Year = 1992} |
1709 |
|
|
|
1710 |
|
|
@article{Wan94, |
1711 |
|
|
Author = {Yi. Wan and R.~M. Stratt}, |
1712 |
|
|
Journal = jcp, |
1713 |
|
|
Pages = {5123-5138}, |
1714 |
|
|
Title = {Liquid theory for the instantaneous normal modes of a liquid}, |
1715 |
|
|
Volume = 100, |
1716 |
|
|
Year = 1994} |
1717 |
|
|
|
1718 |
|
|
@article{Stratt95, |
1719 |
|
|
Author = {R.~M. Stratt}, |
1720 |
|
|
Journal = {Acc. Chem. Res.}, |
1721 |
|
|
Pages = {201-207}, |
1722 |
|
|
Title = {The instantaneous normal modes of liquids}, |
1723 |
|
|
Volume = 28, |
1724 |
|
|
Year = 1995} |
1725 |
|
|
|
1726 |
|
|
@article{Nitzan95, |
1727 |
|
|
Author = {G.~V. Vijayadamodar and A. Nitzan}, |
1728 |
|
|
Journal = jcp, |
1729 |
|
|
Pages = {2169-2177}, |
1730 |
|
|
Title = {On the application of instantaneous normal mode analysis to long time dynamics of liquids}, |
1731 |
|
|
Volume = 103, |
1732 |
|
|
Year = 1995} |
1733 |
|
|
|
1734 |
|
|
@article{Ribeiro98, |
1735 |
|
|
Author = {M.~C.~C. Ribeiro and P.~A. Madden}, |
1736 |
|
|
Journal = jcp, |
1737 |
|
|
Pages = {3256-3263}, |
1738 |
|
|
Title = {Unstable Modes in Ionic Melts}, |
1739 |
|
|
Volume = 108, |
1740 |
|
|
Year = 1998} |
1741 |
|
|
|
1742 |
|
|
@article{Keyes98, |
1743 |
|
|
Author = {T. Keyes and W.-X. Li and U.~Z{\"{u}}rcher}, |
1744 |
|
|
Date-Modified = {2006-02-15 10:22:13 -0500}, |
1745 |
|
|
Journal = jcp, |
1746 |
|
|
Pages = {4693-4694}, |
1747 |
|
|
Title = {Comment on a critique of the instantaneous normal mode (INM) approach to diffusion (J. Chem. Phys. {\bf 107}, 4618 (1997))}, |
1748 |
|
|
Volume = 109, |
1749 |
|
|
Year = 1998} |
1750 |
|
|
|
1751 |
|
|
@article{Alemany98, |
1752 |
|
|
Author = {M.~M.~G. Alemany and C. Rey and L.~J. Gallego}, |
1753 |
|
|
Journal = jcp, |
1754 |
|
|
Pages = {5175-5176}, |
1755 |
|
|
Title = {Transport coefficients of liquid transition metals: A computer simulation study using the embedded atom model}, |
1756 |
|
|
Volume = 109, |
1757 |
|
|
Year = 1998} |
1758 |
|
|
|
1759 |
|
|
@article{Belonoshko00, |
1760 |
|
|
Author = {A.~B. Belonoshko and R. Ahuja and O. Eriksson and B. Johansson}, |
1761 |
|
|
Journal = prb, |
1762 |
|
|
Pages = {3838-3844}, |
1763 |
|
|
Title = {Quasi ab initio molecular dynamic study of Cu melting}, |
1764 |
|
|
Volume = 61, |
1765 |
|
|
Year = 2000} |
1766 |
|
|
|
1767 |
|
|
@article{Banhart92, |
1768 |
|
|
Author = {J. Banhart and H. Ebert and R. Kuentzler and J. Voitl\"{a}nder}, |
1769 |
|
|
Journal = prb, |
1770 |
|
|
Pages = {9968-9975}, |
1771 |
|
|
Title = {Electronic properties of single-phased metastable Ag-Cu alloys}, |
1772 |
|
|
Volume = 46, |
1773 |
|
|
Year = 1992} |
1774 |
|
|
|
1775 |
|
|
@article{Wendt78, |
1776 |
|
|
Author = {H. Wendt and F.~F. Abraham}, |
1777 |
|
|
Journal = prl, |
1778 |
|
|
Pages = 1244, |
1779 |
|
|
Volume = 41, |
1780 |
|
|
Year = 1978} |
1781 |
|
|
|
1782 |
|
|
@article{Lewis91, |
1783 |
|
|
Author = {L.~J. Lewis}, |
1784 |
|
|
Journal = prb, |
1785 |
|
|
Pages = {4245-4254}, |
1786 |
|
|
Title = {Atomic dynamics through the glass transition}, |
1787 |
|
|
Volume = 44, |
1788 |
|
|
Year = 1991} |
1789 |
|
|
|
1790 |
|
|
@article{Liu92, |
1791 |
|
|
Author = {R.~S. Liu and D.~W. Qi and S. Wang}, |
1792 |
|
|
Journal = prb, |
1793 |
|
|
Pages = {451-453}, |
1794 |
|
|
Title = {Subpeaks of structure factors for rapidly quenched metals}, |
1795 |
|
|
Volume = 45, |
1796 |
|
|
Year = 1992} |
1797 |
|
|
|
1798 |
|
|
@article{Anheuser94, |
1799 |
|
|
Author = {K. Anheuser and J.P. Northover}, |
1800 |
|
|
Journal = {Brit. Num. J.}, |
1801 |
|
|
Pages = 22, |
1802 |
|
|
Title = {Silver plating of Roman and Celtic coins from Britan - a technical study}, |
1803 |
|
|
Volume = 64, |
1804 |
|
|
Year = 1994} |
1805 |
|
|
|
1806 |
|
|
@article{Pense92, |
1807 |
|
|
Author = {A. W. Pense}, |
1808 |
|
|
Journal = {Mat. Char.}, |
1809 |
|
|
Pages = 213, |
1810 |
|
|
Title = {The Decline and Fall of the Roman Denarius}, |
1811 |
|
|
Volume = 29, |
1812 |
|
|
Year = 1992} |
1813 |
|
|
|
1814 |
|
|
@article{Ngai81, |
1815 |
|
|
Author = {K.~L. Ngai and F.-S. Liu}, |
1816 |
|
|
Journal = prb, |
1817 |
|
|
Pages = {1049-1065}, |
1818 |
|
|
Title = {Dispersive diffusion transport and noise, time-dependent diffusion coefficient, generalized Einstein-Nernst relation, and dispersive diffusion-controlled unimolecular and bimolecular reactions}, |
1819 |
|
|
Volume = 24, |
1820 |
|
|
Year = 1981} |
1821 |
|
|
|
1822 |
|
|
@unpublished{Truhlar00, |
1823 |
|
|
Author = {D.~G. Truhlar and A. Kohen}, |
1824 |
|
|
Date-Modified = {2006-02-15 16:35:52 -0500}, |
1825 |
|
|
Note = {private correspondence}, |
1826 |
|
|
Year = {2000}} |
1827 |
|
|
|
1828 |
|
|
@article{Truhlar78, |
1829 |
|
|
Author = {Donald G. Truhlar}, |
1830 |
|
|
Journal = {J. Chem. Ed.}, |
1831 |
|
|
Pages = 309, |
1832 |
|
|
Title = {Interpretation of the Activation Energy}, |
1833 |
|
|
Volume = 55, |
1834 |
|
|
Year = 1978} |
1835 |
|
|
|
1836 |
|
|
@book{Tolman27, |
1837 |
|
|
Address = {New York}, |
1838 |
|
|
Author = {R. C. Tolman}, |
1839 |
|
|
Pages = {260-270}, |
1840 |
|
|
Publisher = {Chemical Catalog Co.}, |
1841 |
|
|
Title = {Statistical Mechanics with Applications to Physics and Chemistry}, |
1842 |
|
|
Year = 1927} |
1843 |
|
|
|
1844 |
|
|
@article{Tolman20, |
1845 |
|
|
Author = {R. C. Tolman}, |
1846 |
|
|
Journal = jacs, |
1847 |
|
|
Pages = 2506, |
1848 |
|
|
Title = {Statistical Mechanics Applied to Chemical Kinetics}, |
1849 |
|
|
Volume = 42, |
1850 |
|
|
Year = 1920} |
1851 |
|
|
|
1852 |
|
|
@article{Ediger96, |
1853 |
|
|
Author = {M.D. Ediger and C.A. Angell and Sidney R. Nagel}, |
1854 |
|
|
Date-Modified = {2006-02-15 10:16:35 -0500}, |
1855 |
|
|
Journal = jpc, |
1856 |
|
|
Pages = 13200, |
1857 |
|
|
Title = {Supercooled Liquids and Glasses}, |
1858 |
|
|
Volume = 100, |
1859 |
|
|
Year = 1996} |
1860 |
|
|
|
1861 |
|
|
@inbook{Blumen86, |
1862 |
|
|
Address = {Amsterdam}, |
1863 |
|
|
Author = {A. Blumen and J. Klafter and G. Zumofen}, |
1864 |
|
|
Chapter = {Reactions in Disordered Media Modelled by Fractals}, |
1865 |
|
|
Editor = {Luciano Peitronero and E. Tosatti}, |
1866 |
|
|
Pages = 399, |
1867 |
|
|
Publisher = {North-Holland}, |
1868 |
|
|
Series = {International Symposium on Fractals in Physics}, |
1869 |
|
|
Title = {Fractals in Physics}, |
1870 |
|
|
Year = 1986} |
1871 |
|
|
|
1872 |
|
|
@article{Shlesinger84, |
1873 |
|
|
Author = {M.~F. Shlesinger and E.~W. Montroll}, |
1874 |
|
|
Journal = {Proc. Natl. Acad. Sci. USA}, |
1875 |
|
|
Pages = {1280-1283}, |
1876 |
|
|
Title = {On the Williams-Watts function of dielectric relaxation}, |
1877 |
|
|
Volume = 81, |
1878 |
|
|
Year = 1984} |
1879 |
|
|
|
1880 |
|
|
@article{Klafter86, |
1881 |
|
|
Author = {J. Klafter and M.~F. Shlesinger}, |
1882 |
|
|
Journal = {Proc. Natl. Acad. Sci. USA}, |
1883 |
|
|
Pages = {848-851}, |
1884 |
|
|
Title = {On the relationship among three theories of relaxation in disordered systems}, |
1885 |
|
|
Volume = 83, |
1886 |
|
|
Year = 1986} |
1887 |
|
|
|
1888 |
|
|
@article{Li01, |
1889 |
|
|
Author = {Z. Li and M. Lieberman and W. Hill}, |
1890 |
|
|
Date-Modified = {2006-02-15 10:25:36 -0500}, |
1891 |
|
|
Journal = {Langmuir}, |
1892 |
|
|
Pages = {4887-4894}, |
1893 |
|
|
Title = {{\sc xps} and {\sc sers} Study of Silicon Phthalocyanine Monolayers: umbrella vs. octopus design strategies for formation of oriented {\sc sam}s}, |
1894 |
|
|
Volume = 17, |
1895 |
|
|
Year = 2001} |
1896 |
|
|
|
1897 |
|
|
@article{Evans93, |
1898 |
|
|
Author = {J.~W. Evans}, |
1899 |
|
|
Date-Modified = {2006-02-15 10:17:03 -0500}, |
1900 |
|
|
Journal = rmp, |
1901 |
|
|
Pages = {1281-1329}, |
1902 |
|
|
Title = {Random and Cooperative Sequential Adsorption}, |
1903 |
|
|
Volume = 65, |
1904 |
|
|
Year = 1993} |
1905 |
|
|
|
1906 |
|
|
@article{Dwyer1977, |
1907 |
|
|
Author = {D.~J. Dwyer and G.~W. Simmons and R.~P. Wei}, |
1908 |
|
|
Journal = {Surf. Sci.}, |
1909 |
|
|
Pages = 617, |
1910 |
|
|
Volume = 64, |
1911 |
|
|
Year = 1977} |
1912 |
|
|
|
1913 |
|
|
@article{Macritche78, |
1914 |
|
|
Author = {F. MacRitche}, |
1915 |
|
|
Date-Modified = {2006-02-15 10:27:37 -0500}, |
1916 |
|
|
Journal = {Adv. Protein Chem.}, |
1917 |
|
|
Pages = 283, |
1918 |
|
|
Volume = 32, |
1919 |
|
|
Year = 1978} |
1920 |
|
|
|
1921 |
|
|
@article{Feder80, |
1922 |
|
|
Author = {J. Feder}, |
1923 |
|
|
Date-Modified = {2006-02-15 10:17:21 -0500}, |
1924 |
|
|
Journal = {J. Theor. Biol.}, |
1925 |
|
|
Pages = 237, |
1926 |
|
|
Volume = 87, |
1927 |
|
|
Year = 1980} |
1928 |
|
|
|
1929 |
|
|
@article{Ramsden93, |
1930 |
|
|
Author = {J.~J. Ramsden}, |
1931 |
|
|
Date-Modified = {2006-02-15 10:31:03 -0500}, |
1932 |
|
|
Journal = prl, |
1933 |
|
|
Pages = 295, |
1934 |
|
|
Volume = 71, |
1935 |
|
|
Year = 1993} |
1936 |
|
|
|
1937 |
|
|
@article{Egelhoff89, |
1938 |
|
|
Author = {W.~F. Egelhoff and I. Jacob}, |
1939 |
|
|
Date-Modified = {2006-02-15 10:16:54 -0500}, |
1940 |
|
|
Journal = prl, |
1941 |
|
|
Pages = 921, |
1942 |
|
|
Volume = 62, |
1943 |
|
|
Year = 1989} |
1944 |
|
|
|
1945 |
|
|
@article{Viot92a, |
1946 |
|
|
Author = {P. Viot and G. Tarjus and S.~M. Ricci and J. Talbot}, |
1947 |
|
|
Date-Modified = {2006-02-15 10:12:51 -0500}, |
1948 |
|
|
Journal = jpc, |
1949 |
|
|
Pages = {5212-5218}, |
1950 |
|
|
Title = {RANDOM SEQUENTIAL ADSORPTION OF ANISOTROPIC PARTICLES 1. JAMMING LIMIT AND ASYMPTOTIC-BEHAVIOR}, |
1951 |
|
|
Volume = 97, |
1952 |
|
|
Year = 1992} |
1953 |
|
|
|
1954 |
|
|
@article{Viot92b, |
1955 |
|
|
Author = {P. Viot and G. Tarjus and S.~M. Ricci and J. Talbot}, |
1956 |
|
|
Date-Modified = {2006-02-15 10:12:57 -0500}, |
1957 |
|
|
Journal = {Physica A}, |
1958 |
|
|
Pages = {248-252}, |
1959 |
|
|
Title = {SATURATION COVERAGE IN RANDOM SEQUENTIAL ADSORPTION OF VERY ELONGATED PARTICLES}, |
1960 |
|
|
Volume = 191, |
1961 |
|
|
Year = 1992} |
1962 |
|
|
|
1963 |
|
|
@article{Dobson1987, |
1964 |
|
|
Author = {B.~W. Dobson}, |
1965 |
|
|
Journal = prb, |
1966 |
|
|
Pages = 1068, |
1967 |
|
|
Volume = 36, |
1968 |
|
|
Year = 1987} |
1969 |
|
|
|
1970 |
|
|
@article{Boyer95, |
1971 |
|
|
Author = {D. Boyer and P. Viot and G. Tarjus and J. Talbot}, |
1972 |
|
|
Date-Modified = {2006-02-15 10:15:52 -0500}, |
1973 |
|
|
Journal = jcp, |
1974 |
|
|
Pages = 1607, |
1975 |
|
|
Title = {PERCUS-$\mbox{Y}$EVICK-LIKE INTERGRAL EQUATION FOR RANDOM SEQUENTIAL ADSORPTION}, |
1976 |
|
|
Volume = 103, |
1977 |
|
|
Year = 1995} |
1978 |
|
|
|
1979 |
|
|
@article{Viot92c, |
1980 |
|
|
Author = {P. Viot and G. Tarjus and S.~M. Ricci and J. Talbot}, |
1981 |
|
|
Date-Modified = {2006-02-15 10:13:03 -0500}, |
1982 |
|
|
Journal = {Physica A}, |
1983 |
|
|
Pages = {248-252}, |
1984 |
|
|
Title = {SATURATION COVERAGE OF HIGHLY ELONGATED ANISOTROPIC PARTICLES}, |
1985 |
|
|
Volume = 191, |
1986 |
|
|
Year = 1992} |
1987 |
|
|
|
1988 |
|
|
@article{Ricci94, |
1989 |
|
|
Author = {S.~M. Ricci and J. Talbot and G. Tarjus and P. Viot}, |
1990 |
|
|
Date-Modified = {2006-02-15 10:31:32 -0500}, |
1991 |
|
|
Journal = jcp, |
1992 |
|
|
Pages = 9164, |
1993 |
|
|
Title = {A STRUCTURAL COMPARISON OF RANDOM SEQUENTIAL ADSORPTION AND EQUILIBRIUM CONFIGURATIONS OF SPHEROCYLINDERS}, |
1994 |
|
|
Volume = 101, |
1995 |
|
|
Year = 1994} |
1996 |
|
|
|
1997 |
|
|
@article{Semmler98, |
1998 |
|
|
Author = {M. Semmler and E.~K. Mann and J. Ricka and M. Borkovec}, |
1999 |
|
|
Date-Modified = {2006-02-15 10:14:46 -0500}, |
2000 |
|
|
Journal = {Langmuir}, |
2001 |
|
|
Pages = {5127-5132}, |
2002 |
|
|
Title = {Diffusional Deposition of Charged Latex Particles on Water-Solid Interfaces at Low Ionic Strength}, |
2003 |
|
|
Volume = 14, |
2004 |
|
|
Year = 1998} |
2005 |
|
|
|
2006 |
|
|
@article{Solomon86, |
2007 |
|
|
Author = {H. Solomon and H. Weiner}, |
2008 |
|
|
Date-Modified = {2006-02-15 10:10:38 -0500}, |
2009 |
|
|
Journal = {Comm. Statistics A}, |
2010 |
|
|
Pages = {2571-2607}, |
2011 |
|
|
Title = {A REVIEW OF THE PACKING PROBLEM}, |
2012 |
|
|
Volume = 15, |
2013 |
|
|
Year = 1986} |
2014 |
|
|
|
2015 |
|
|
@article{Bonnier93, |
2016 |
|
|
Author = {B. Bonnier and M. Hontebeyrie and C. Meyers}, |
2017 |
|
|
Date-Modified = {2006-02-15 10:08:35 -0500}, |
2018 |
|
|
Journal = {Physica A}, |
2019 |
|
|
Pages = {1-10}, |
2020 |
|
|
Title = {ON THE RANDOM FILLING OF R(D) BY NONOVERLAPPING D-DIMENSIONAL CUBES}, |
2021 |
|
|
Volume = 198, |
2022 |
|
|
Year = 1993} |
2023 |
|
|
|
2024 |
|
|
@book{Frenkel96, |
2025 |
|
|
Address = {New York}, |
2026 |
|
|
Author = {D. Frenkel and B. Smit}, |
2027 |
|
|
Date-Modified = {2006-02-15 10:18:08 -0500}, |
2028 |
|
|
Publisher = {Academic Press}, |
2029 |
|
|
Title = {Understanding Molecular Simulation : From Algorithms to Applications}, |
2030 |
|
|
Year = 1996} |
2031 |
|
|
|
2032 |
|
|
@article{Dullweber1997, |
2033 |
|
|
Author = {A. Dullweber and B. Leimkuhler and R. McLachlan}, |
2034 |
|
|
Journal = jcp, |
2035 |
|
|
Number = 15, |
2036 |
|
|
Pages = {5840-5851}, |
2037 |
|
|
Title = {Symplectic splitting methods for rigid body molecular dynamics}, |
2038 |
|
|
Volume = 107, |
2039 |
|
|
Year = 1997} |
2040 |
|
|
|
2041 |
|
|
@article{Martin98, |
2042 |
|
|
Author = {M. Martin and J.~I. Siepmann}, |
2043 |
|
|
Date-Modified = {2006-02-15 10:15:05 -0500}, |
2044 |
|
|
Journal = jpcB, |
2045 |
|
|
Pages = {2569-2577}, |
2046 |
|
|
Title = {Transferable Potentials for Phase Equilibria. 1. United-Atom Description of n-Alkanes}, |
2047 |
|
|
Volume = 102, |
2048 |
|
|
Year = 1998} |
2049 |
|
|
|
2050 |
|
|
@article{Marrink01a, |
2051 |
|
|
Author = {S.~J. Marrink and E. Lindahl and O. Edholm and A.~E. Mark}, |
2052 |
|
|
Date-Modified = {2006-02-15 10:28:09 -0500}, |
2053 |
|
|
Journal = jacs, |
2054 |
|
|
Pages = {8638-8639}, |
2055 |
|
|
Title = {Simulations of the Spontaneous Aggregation of Phospholipids into Bilayers}, |
2056 |
|
|
Volume = 123, |
2057 |
|
|
Year = 2001} |
2058 |
|
|
|
2059 |
|
|
@article{Liu96b, |
2060 |
|
|
Author = {Y. Liu and T. Ichiye}, |
2061 |
|
|
Date-Modified = {2006-02-15 10:27:07 -0500}, |
2062 |
|
|
Journal = jpc, |
2063 |
|
|
Pages = {2723-2730}, |
2064 |
|
|
Title = {Soft sticky dipole potential for liquid water: a new model}, |
2065 |
|
|
Volume = 100, |
2066 |
|
|
Year = 1996} |
2067 |
|
|
|
2068 |
|
|
@article{Liu96a, |
2069 |
|
|
Author = {Y. Liu and T. Ichiye}, |
2070 |
|
|
Date-Modified = {2006-02-15 10:27:01 -0500}, |
2071 |
|
|
Journal = {Chem. Phys. Lett.}, |
2072 |
|
|
Pages = {334-340}, |
2073 |
|
|
Title = {The static dielectric constant of the soft sticky dipole model of liquid water: $\mbox{Monte Carlo}$ simulation}, |
2074 |
|
|
Volume = 256, |
2075 |
|
|
Year = 1996} |
2076 |
|
|
|
2077 |
|
|
@article{Chandra99, |
2078 |
|
|
Author = {A. Chandra and T. Ichiye}, |
2079 |
|
|
Date-Modified = {2006-02-15 10:09:36 -0500}, |
2080 |
|
|
Journal = {J. Chem. Phys.}, |
2081 |
|
|
Number = 6, |
2082 |
|
|
Pages = {2701-2709}, |
2083 |
|
|
Title = {Dynamical properties of the soft sticky dipole model of water: Molecular dynamics simulation}, |
2084 |
|
|
Volume = 111, |
2085 |
|
|
Year = 1999} |
2086 |
|
|
|
2087 |
|
|
@book{Allen87, |
2088 |
|
|
Address = {New York}, |
2089 |
|
|
Author = {M.~P. Allen and D.~J. Tildesley}, |
2090 |
|
|
Date-Modified = {2006-02-15 10:08:08 -0500}, |
2091 |
|
|
Publisher = {Oxford University Press}, |
2092 |
|
|
Title = {Computer Simulations of Liquids}, |
2093 |
|
|
Year = 1987} |
2094 |
|
|
|
2095 |
|
|
@book{Leach01, |
2096 |
|
|
Address = {Harlow, England}, |
2097 |
|
|
Author = {A.~R. Leach}, |
2098 |
|
|
Date-Modified = {2006-02-15 10:25:19 -0500}, |
2099 |
|
|
Edition = {2nd}, |
2100 |
|
|
Publisher = {Pearson Educated Limited}, |
2101 |
|
|
Title = {Molecular Modeling: Principles and Applications}, |
2102 |
|
|
Year = 2001} |
2103 |
|
|
|
2104 |
|
|
@article{Sengupta00, |
2105 |
|
|
Author = {K. Sengupta and V.~A. Raghunathan and J. Katsaras}, |
2106 |
|
|
Date-Modified = {2006-02-15 10:32:00 -0500}, |
2107 |
|
|
Journal = {Europhysics Letters}, |
2108 |
|
|
Number = 6, |
2109 |
|
|
Pages = {722-728}, |
2110 |
|
|
Title = {Novel structural Features of the ripple phase of phospholipids}, |
2111 |
|
|
Volume = 49, |
2112 |
|
|
Year = 2000} |
2113 |
|
|
|
2114 |
|
|
@article{Venable00, |
2115 |
|
|
Author = {R.~M. Venable and B.~R. Brooks and R.~W. Pastor}, |
2116 |
|
|
Date-Modified = {2006-02-15 10:11:19 -0500}, |
2117 |
|
|
Journal = jcp, |
2118 |
|
|
Number = 10, |
2119 |
|
|
Pages = {4822-4832}, |
2120 |
|
|
Title = {Molecular dynamics simulations of gel ($L_{\beta I}$) phase lipid bilayers in constant pressure and constant surface area ensembles}, |
2121 |
|
|
Volume = 112, |
2122 |
|
|
Year = 2000} |
2123 |
|
|
|
2124 |
|
|
@article{Lindahl00, |
2125 |
|
|
Author = {E. Lindahl and O. Edholm}, |
2126 |
|
|
Date-Modified = {2006-02-15 10:26:05 -0500}, |
2127 |
|
|
Journal = {Biophysical Journal}, |
2128 |
|
|
Month = {July}, |
2129 |
|
|
Pages = {426-433}, |
2130 |
|
|
Title = {Mesoscopic undulations and thickness fluctuations in lipid bilayers from molecular dynamics simulations}, |
2131 |
|
|
Volume = 79, |
2132 |
|
|
Year = 2000} |
2133 |
|
|
|
2134 |
|
|
@article{Saiz02, |
2135 |
|
|
Author = {L. Saiz and M. Klein}, |
2136 |
|
|
Date-Modified = {2006-02-15 10:31:50 -0500}, |
2137 |
|
|
Journal = jcp, |
2138 |
|
|
Number = 7, |
2139 |
|
|
Pages = {3052-3057}, |
2140 |
|
|
Title = {Electrostatic interactions in a neutral model phospholipid bilayer by molecular dynamics simulations}, |
2141 |
|
|
Volume = 116, |
2142 |
|
|
Year = 2002} |
2143 |
|
|
|
2144 |
|
|
@article{Stevens95, |
2145 |
|
|
Author = {M.~J. Stevens and G.~S. Grest}, |
2146 |
|
|
Date-Modified = {2006-02-15 10:10:47 -0500}, |
2147 |
|
|
Journal = {Physical Review E}, |
2148 |
|
|
Number = 6, |
2149 |
|
|
Pages = {5976-5983}, |
2150 |
|
|
Title = {Phase coexistence of a Stockmayer fluid in an aplied field}, |
2151 |
|
|
Volume = 51, |
2152 |
|
|
Year = 1995} |
2153 |
|
|
|
2154 |
|
|
@article{Darden93, |
2155 |
|
|
Author = {T. Darden and D. York and L. Pedersen}, |
2156 |
|
|
Date-Modified = {2006-03-16 08:37:25 -0500}, |
2157 |
|
|
Journal = {J. Chem. Phys.}, |
2158 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Darden_ParticleMeshEwald_93.pdf}, |
2159 |
|
|
Number = 12, |
2160 |
|
|
Pages = {10089-10092}, |
2161 |
|
|
Title = {Particle mesh Ewald: An $N \log N$ method for Ewald sums in large systems}, |
2162 |
|
|
Volume = 98, |
2163 |
|
|
Year = 1993} |
2164 |
|
|
|
2165 |
|
|
@article{Goetz98, |
2166 |
|
|
Author = {R. Goetz and R. Lipowsky}, |
2167 |
|
|
Date-Modified = {2006-02-15 10:18:26 -0500}, |
2168 |
|
|
Journal = {J. Chem. Phys.}, |
2169 |
|
|
Number = 17, |
2170 |
|
|
Pages = 7397, |
2171 |
|
|
Title = {Computer simulations of bilayer membranes: Self-assembly and interfacial tension}, |
2172 |
|
|
Volume = 108, |
2173 |
|
|
Year = 1998} |
2174 |
|
|
|
2175 |
|
|
@article{Marrink01b, |
2176 |
|
|
Author = {S.~J. Marrink and A.~E. Mark}, |
2177 |
|
|
Date-Modified = {2006-02-15 10:28:01 -0500}, |
2178 |
|
|
Journal = {Journal of Physical Chemistry B}, |
2179 |
|
|
Pages = {6122-6127}, |
2180 |
|
|
Title = {Effect of undulations on surface tension in simulated bilayers}, |
2181 |
|
|
Volume = 105, |
2182 |
|
|
Year = 2001} |
2183 |
|
|
|
2184 |
|
|
@article{Metropolis49, |
2185 |
|
|
Author = {N. Metropolis and S. Ulam}, |
2186 |
|
|
Date-Modified = {2006-02-15 10:29:03 -0500}, |
2187 |
|
|
Journal = {J. Am. Stat. Ass.}, |
2188 |
|
|
Pages = {335-341}, |
2189 |
|
|
Title = {The $\mbox{Monte Carlo}$ Method}, |
2190 |
|
|
Volume = 44, |
2191 |
|
|
Year = 1949} |
2192 |
|
|
|
2193 |
|
|
@article{Metropolis53, |
2194 |
|
|
Author = {N. Metropolis and A.~W. Rosenbluth and M.~N. Rosenbluth and A.~H. Teller and E. Teller}, |
2195 |
|
|
Date-Modified = {2006-03-09 10:44:24 -0500}, |
2196 |
|
|
Journal = {J. Chem. Phys.}, |
2197 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Metropolis_MCCalculations_53.pdf}, |
2198 |
|
|
Pages = {1087-1092}, |
2199 |
|
|
Title = {Equation of State Calculations by Fast Computing Machines}, |
2200 |
|
|
Volume = 21, |
2201 |
|
|
Year = 1953} |
2202 |
|
|
|
2203 |
|
|
@article{Born12, |
2204 |
|
|
Author = {M. Born and Th. Von~Karman}, |
2205 |
|
|
Date-Modified = {2006-02-15 10:08:50 -0500}, |
2206 |
|
|
Journal = {Physik Z.}, |
2207 |
|
|
Number = {297-309}, |
2208 |
|
|
Title = {Uber Schwingungen in Raumgittern}, |
2209 |
|
|
Volume = 13, |
2210 |
|
|
Year = 1912} |
2211 |
|
|
|
2212 |
|
|
@book{Chandler87, |
2213 |
|
|
Author = {David Chandler}, |
2214 |
|
|
Date-Modified = {2006-02-15 10:09:20 -0500}, |
2215 |
|
|
Publisher = {Oxford University Press}, |
2216 |
|
|
Title = {Introduction to Modern Statistical Mechanics}, |
2217 |
|
|
Year = 1987} |
2218 |
|
|
|
2219 |
|
|
@article{Pearlman95, |
2220 |
|
|
Author = {David~A. Pearlman and David~A. Case and James~W. Caldwell and Wilson~S. Ross and Thomas~E. Cheatham~III and Steve DeBolt and David Ferguson and George Seibel and Peter Kollman}, |
2221 |
|
|
Date-Modified = {2006-02-15 10:30:13 -0500}, |
2222 |
|
|
Journal = {Computer Physics Communications}, |
2223 |
|
|
Pages = {1-41}, |
2224 |
|
|
Title = {{\sc amber}, a package of computer programs for applying molecular mechanics. normal mode analysis, molecular dynamics, and free energy calculations to simulate the structural and energetic properties of molecules}, |
2225 |
|
|
Volume = 91, |
2226 |
|
|
Year = 1995} |
2227 |
|
|
|
2228 |
|
|
@book{Goldstein01, |
2229 |
|
|
Address = {San Francisco}, |
2230 |
|
|
Author = {H. Goldstein and C. Poole and J. Safko}, |
2231 |
|
|
Edition = {3rd}, |
2232 |
|
|
Publisher = {Addison Wesley}, |
2233 |
|
|
Title = {Classical Mechanics}, |
2234 |
|
|
Year = 2001} |
2235 |
|
|
|
2236 |
|
|
@article{Bratko85, |
2237 |
|
|
Author = {D. Bratko and L. Blum and A. Luzar}, |
2238 |
|
|
Journal = jcp, |
2239 |
|
|
Number = 12, |
2240 |
|
|
Pages = {6367-6370}, |
2241 |
|
|
Title = {A simple model for the intermolecular potential of water}, |
2242 |
|
|
Volume = 83, |
2243 |
|
|
Year = 1985} |
2244 |
|
|
|
2245 |
|
|
@article{Bratko95, |
2246 |
|
|
Author = {L. Blum and F. Vericat and D. Bratko}, |
2247 |
|
|
Journal = jcp, |
2248 |
|
|
Number = 3, |
2249 |
|
|
Pages = {1461-1462}, |
2250 |
|
|
Title = {Towards an analytical model of water: The octupolar model}, |
2251 |
|
|
Volume = 102, |
2252 |
|
|
Year = 1995} |
2253 |
|
|
|
2254 |
|
|
@article{Tan03, |
2255 |
|
|
Author = {M.-L. Tan and J.~T. Fischer and A. Chandra and B.~R. Brooks and T. Ichiye}, |
2256 |
|
|
Journal = cpl, |
2257 |
|
|
Pages = {646-652}, |
2258 |
|
|
Title = {A temperature of maximum density in soft sticky dipole water}, |
2259 |
|
|
Volume = 376, |
2260 |
|
|
Year = 2003} |
2261 |
|
|
|
2262 |
|
|
@article{Soper86, |
2263 |
|
|
Author = {A.~K. Soper and M.~G. Phillips}, |
2264 |
|
|
Journal = cp, |
2265 |
|
|
Number = 1, |
2266 |
|
|
Pages = {47-60}, |
2267 |
|
|
Title = {A new determination of the structure of water at 298K}, |
2268 |
|
|
Volume = 107, |
2269 |
|
|
Year = 1986} |
2270 |
|
|
|
2271 |
|
|
@article{Plimpton95, |
2272 |
|
|
Author = {S. Plimpton}, |
2273 |
|
|
Date-Modified = {2006-02-15 10:30:31 -0500}, |
2274 |
|
|
Journal = {J. Comp. Phys.}, |
2275 |
|
|
Pages = {1-19}, |
2276 |
|
|
Title = {Fast Parallel Algorithms for Short-Range Molecular Dymanics}, |
2277 |
|
|
Volume = 117, |
2278 |
|
|
Year = 1995} |
2279 |
|
|
|
2280 |
|
|
@article{Tartaglino02, |
2281 |
|
|
Author = {U. Tartaglino and E. Tosatti and D. Passerone and F. Ercolessi}, |
2282 |
|
|
Date-Modified = {2006-02-15 10:34:04 -0500}, |
2283 |
|
|
Journal = prb, |
2284 |
|
|
Pages = 241406, |
2285 |
|
|
Title = {Bending strain-driven modification of surface resconstructions: Au(111)}, |
2286 |
|
|
Volume = 65, |
2287 |
|
|
Year = 2002} |
2288 |
|
|
|
2289 |
|
|
@article{Ercolessi88, |
2290 |
|
|
Author = {F. Ercolessi and M. Parrinello and E. Tosatti}, |
2291 |
|
|
Journal = {Philosophical Magazine A}, |
2292 |
|
|
Pages = {213-226}, |
2293 |
|
|
Title = {Simulation of Gold in the Glue Model.}, |
2294 |
|
|
Volume = 58, |
2295 |
|
|
Year = 1988} |
2296 |
|
|
|
2297 |
|
|
@article{Finnis84, |
2298 |
|
|
Author = {M.~W Finnis and J.~E. Sinclair}, |
2299 |
|
|
Journal = {Phil. Mag. A}, |
2300 |
|
|
Pages = {45-55}, |
2301 |
|
|
Title = {A Simple Empirical N-Body Potential for Transition-Metals}, |
2302 |
|
|
Volume = 50, |
2303 |
|
|
Year = 1984} |
2304 |
|
|
|
2305 |
|
|
@article{Foiles86, |
2306 |
|
|
Author = {S.~M. Foiles and M.~I. Baskes and M.~S. Daw}, |
2307 |
|
|
Date-Modified = {2006-02-15 10:17:44 -0500}, |
2308 |
|
|
Journal = prb, |
2309 |
|
|
Number = 12, |
2310 |
|
|
Pages = 7983, |
2311 |
|
|
Title = {Embedded-atom-method functions for the fcc metals $\mbox{Cu, Ag, Au, Ni, Pd, Pt}$, and their alloys}, |
2312 |
|
|
Volume = 33, |
2313 |
|
|
Year = 1986} |
2314 |
|
|
|
2315 |
|
|
@article{Daw93, |
2316 |
|
|
Author = {M.~S. Daw and S.~M. Foiles and M.~I. Baskes}, |
2317 |
|
|
Date-Modified = {2006-02-15 10:16:13 -0500}, |
2318 |
|
|
Journal = {Mat. Sci. Rep.}, |
2319 |
|
|
Pages = {251-310}, |
2320 |
|
|
Title = {The embededd-atom method}, |
2321 |
|
|
Volume = 9, |
2322 |
|
|
Year = 1993} |
2323 |
|
|
|
2324 |
|
|
@article{Johnson89, |
2325 |
|
|
Author = {R.~A. Johnson}, |
2326 |
|
|
Date-Modified = {2006-02-15 10:21:36 -0500}, |
2327 |
|
|
Journal = prb, |
2328 |
|
|
Number = 17, |
2329 |
|
|
Pages = 12554, |
2330 |
|
|
Title = {Alloy models with the embedded-atom method}, |
2331 |
|
|
Volume = 39, |
2332 |
|
|
Year = 1989} |
2333 |
|
|
|
2334 |
|
|
@article{Kol97, |
2335 |
|
|
Author = {A. Kol and B.~B. Laird and B.~J. Leimkuhler}, |
2336 |
|
|
Date-Modified = {2006-02-15 10:24:53 -0500}, |
2337 |
|
|
Journal = jcp, |
2338 |
|
|
Number = 7, |
2339 |
|
|
Pages = {2580-2588}, |
2340 |
|
|
Title = {A symplectic method for rigid-body molecular simulation}, |
2341 |
|
|
Volume = 107, |
2342 |
|
|
Year = 1997} |
2343 |
|
|
|
2344 |
|
|
@article{Hoover85, |
2345 |
|
|
Author = {W.~G. Hoover}, |
2346 |
|
|
Date-Modified = {2006-02-15 10:21:18 -0500}, |
2347 |
|
|
Journal = pra, |
2348 |
|
|
Pages = 1695, |
2349 |
|
|
Title = {Canonical dynamics: Equilibrium phase-space distributions}, |
2350 |
|
|
Volume = 31, |
2351 |
|
|
Year = 1985} |
2352 |
|
|
|
2353 |
|
|
@article{Roux91, |
2354 |
|
|
Author = {B. Roux and M. Karplus}, |
2355 |
|
|
Journal = jpc, |
2356 |
|
|
Number = 15, |
2357 |
|
|
Pages = {4856-4868}, |
2358 |
|
|
Title = {Ion transport in a Gramicidin-like channel: dynamics and mobility}, |
2359 |
|
|
Volume = 95, |
2360 |
|
|
Year = 1991} |
2361 |
|
|
|
2362 |
|
|
@article{Marrink94, |
2363 |
|
|
Author = {S.~J Marrink and H.~J.~C. Berendsen}, |
2364 |
|
|
Journal = jpc, |
2365 |
|
|
Number = 15, |
2366 |
|
|
Pages = {4155-4168}, |
2367 |
|
|
Title = {Simulation of water transport through a lipid membrane}, |
2368 |
|
|
Volume = 98, |
2369 |
|
|
Year = 1994} |
2370 |
|
|
|
2371 |
|
|
@article{Daw89, |
2372 |
|
|
Author = {Murray~S. Daw}, |
2373 |
|
|
Journal = {Physical Review B}, |
2374 |
|
|
Pages = {7441-7452}, |
2375 |
|
|
Title = {Model of metallic cohesion: The embedded-atom method}, |
2376 |
|
|
Volume = 39, |
2377 |
|
|
Year = 1989} |
2378 |
|
|
|
2379 |
|
|
@inbook{Voter95b, |
2380 |
|
|
Author = {A.~F. Voter}, |
2381 |
|
|
Chapter = 4, |
2382 |
|
|
Date-Modified = {2006-02-15 10:35:07 -0500}, |
2383 |
|
|
Editor = {J.~H. Westbrook and R.~L. Fleischer}, |
2384 |
|
|
Pages = 77, |
2385 |
|
|
Publisher = {John Wiley and Sons Ltd}, |
2386 |
|
|
Title = {Intermetallic Compounds: Principles and Practice}, |
2387 |
|
|
Volume = 1, |
2388 |
|
|
Year = 1995} |
2389 |
|
|
|
2390 |
|
|
@article{Marrink02, |
2391 |
|
|
Author = {S.~J. Marrink and D.~P. Teileman}, |
2392 |
|
|
Date-Modified = {2006-02-15 10:28:20 -0500}, |
2393 |
|
|
Journal = {Biophysical Journal}, |
2394 |
|
|
Pages = {2386-2392}, |
2395 |
|
|
Title = {Molecular Dynamics Simulation of Spontaneous Membrane Fusion during a Cubic-Hexagonal Phase Transition}, |
2396 |
|
|
Volume = 83, |
2397 |
|
|
Year = 2002} |
2398 |
|
|
|
2399 |
|
|
@article{Sum03, |
2400 |
|
|
Author = {A.~K. Sum and J.~J. de~Pablo}, |
2401 |
|
|
Date-Modified = {2006-02-15 10:11:01 -0500}, |
2402 |
|
|
Journal = {Biophysical Journal}, |
2403 |
|
|
Pages = {3636-3645}, |
2404 |
|
|
Title = {Molecular Simulation Study on the influence of Dimethylsulfoxide on the structure of Phospholipid Bilayers}, |
2405 |
|
|
Volume = 85, |
2406 |
|
|
Year = 2003} |
2407 |
|
|
|
2408 |
|
|
@article{Gomez03, |
2409 |
|
|
Author = {J.~D. Faraldo-Gomez and G.~R. Smith and M.~S.P. Sansom}, |
2410 |
|
|
Date-Modified = {2006-02-15 10:17:14 -0500}, |
2411 |
|
|
Journal = {Eur. Biophys. J.}, |
2412 |
|
|
Pages = {217-227}, |
2413 |
|
|
Title = {Setting up and optimization of membrane protein simulations}, |
2414 |
|
|
Volume = 31, |
2415 |
|
|
Year = 2002} |
2416 |
|
|
|
2417 |
|
|
@article{Smondyrev99, |
2418 |
|
|
Author = {A.~M. Smondyrev and M.~L. Berkowitz}, |
2419 |
|
|
Date-Modified = {2006-02-15 10:10:29 -0500}, |
2420 |
|
|
Journal = {Biophysical Journal}, |
2421 |
|
|
Pages = {2472-2478}, |
2422 |
|
|
Title = {Molecular Dynamics Simulation of {\sc dppc} Bilayer in {\sc dmso}}, |
2423 |
|
|
Volume = 76, |
2424 |
|
|
Year = 1999} |
2425 |
|
|
|
2426 |
|
|
@article{Nina02, |
2427 |
|
|
Author = {M. Nina and T. Simonson}, |
2428 |
|
|
Date-Modified = {2006-02-15 10:29:27 -0500}, |
2429 |
|
|
Journal = {J. Phys. Chem. B}, |
2430 |
|
|
Pages = {3696-3705}, |
2431 |
|
|
Title = {Molecular Dynamics of the $\text{tRNA}^{\text{Ala}}$ Acceptor Stem: Comparison between Continuum Reaction Field and Particle-Mesh Ewald Electrostatic Treatments}, |
2432 |
|
|
Volume = 106, |
2433 |
|
|
Year = 2002} |
2434 |
|
|
|
2435 |
|
|
@article{Norberg00, |
2436 |
|
|
Author = {J. Norberg and L. Nilsson}, |
2437 |
|
|
Date-Modified = {2006-02-15 10:29:36 -0500}, |
2438 |
|
|
Journal = {Biophysical Journal}, |
2439 |
|
|
Pages = {1537-1553}, |
2440 |
|
|
Title = {On the truncation of Long-Range Electrostatic Interactions in {\sc dna}}, |
2441 |
|
|
Volume = 79, |
2442 |
|
|
Year = 2000} |
2443 |
|
|
|
2444 |
|
|
@article{Patra03, |
2445 |
|
|
Author = {M. Patra and M. Karttunen and M.~T. Hyv\"{o}nen and E. Falk and P. Lindqvist and I. Vattulainen}, |
2446 |
|
|
Date-Modified = {2006-02-15 10:29:58 -0500}, |
2447 |
|
|
Journal = {Biophysical Journal}, |
2448 |
|
|
Pages = {3636-3645}, |
2449 |
|
|
Title = {Molecular Dynamics Simulations of Lipid Bilayers: Major Artifacts Due to Truncating Electrostatic Interactions}, |
2450 |
|
|
Volume = 84, |
2451 |
|
|
Year = 2003} |
2452 |
|
|
|
2453 |
|
|
@article{Marrink04, |
2454 |
|
|
Author = {S.~J. Marrink and A.~H. de~Vries and A.~E. Mark}, |
2455 |
|
|
Date-Modified = {2006-02-15 10:28:28 -0500}, |
2456 |
|
|
Journal = {J. Phys. Chem. B}, |
2457 |
|
|
Pages = {750-760}, |
2458 |
|
|
Title = {Coarse Grained Model for Semiquantitative Lipid Simulations}, |
2459 |
|
|
Volume = 108, |
2460 |
|
|
Year = 2004} |
2461 |
|
|
|
2462 |
|
|
@article{Andersen83, |
2463 |
|
|
Author = {H.~C. Andersen}, |
2464 |
|
|
Date-Modified = {2006-02-15 10:08:20 -0500}, |
2465 |
|
|
Journal = {Journal of Computational Physics}, |
2466 |
|
|
Pages = {24-34}, |
2467 |
|
|
Title = {{\sc rattle}: A Velocity Version of the Shake Algorithm for Molecular Dynamics Calculations}, |
2468 |
|
|
Volume = 52, |
2469 |
|
|
Year = 1983} |
2470 |
|
|
|
2471 |
|
|
@article{Hura00, |
2472 |
|
|
Author = {G. Hura and J.~M. Sorenson and R.~M. Glaeser and T. Head-Gordon}, |
2473 |
|
|
Date-Modified = {2006-02-15 10:21:28 -0500}, |
2474 |
|
|
Journal = {J. Chem. Phys.}, |
2475 |
|
|
Pages = {9140-9148}, |
2476 |
|
|
Title = {A high-quality x-ray scattering experiment on liquid water at ambient conditions}, |
2477 |
|
|
Volume = 113, |
2478 |
|
|
Year = 2000} |
2479 |
|
|
|
2480 |
|
|
@article{Ryckaert77, |
2481 |
|
|
Author = {J.~P. Ryckaert and G. Ciccotti and H.~J.~C. Berendsen}, |
2482 |
|
|
Date-Modified = {2006-02-15 10:31:44 -0500}, |
2483 |
|
|
Journal = {Journal of Computational Physics}, |
2484 |
|
|
Pages = {327-341}, |
2485 |
|
|
Title = {Numerical Integration of the Cartesian Equations of Motion of a System with Constraints: Molecular Dynamics of n-Alkanes}, |
2486 |
|
|
Volume = 23, |
2487 |
|
|
Year = 1977} |
2488 |
|
|
|
2489 |
|
|
@inbook{Fowles99, |
2490 |
|
|
Author = {G.~R. Fowles and G.~L. Cassiday}, |
2491 |
|
|
Chapter = 10, |
2492 |
|
|
Date-Modified = {2006-02-15 10:18:00 -0500}, |
2493 |
|
|
Edition = {6th}, |
2494 |
|
|
Publisher = {Saunders College Publishing}, |
2495 |
|
|
Title = {Analytical Mechanics}, |
2496 |
|
|
Year = 1999} |
2497 |
|
|
|
2498 |
|
|
@article{Petrache00, |
2499 |
|
|
Author = {H.~I. Petrache and S.~W. Dodd and M.~F. Brown}, |
2500 |
|
|
Date-Modified = {2006-02-15 10:30:24 -0500}, |
2501 |
|
|
Journal = {Biophysical Journal}, |
2502 |
|
|
Pages = {3172-3192}, |
2503 |
|
|
Title = {Area per Lipid and Acyl Length Distributions in Fluid Phosphatidylcholines Determined by $^2\text{H}$ {\sc nmr} Spectroscopy}, |
2504 |
|
|
Volume = 79, |
2505 |
|
|
Year = 2000} |
2506 |
|
|
|
2507 |
|
|
@article{Egberts88, |
2508 |
|
|
Author = {E. Egberts and H.~J.~C. Berendsen}, |
2509 |
|
|
Date-Modified = {2006-02-15 10:16:43 -0500}, |
2510 |
|
|
Journal = {J. Chem. Phys.}, |
2511 |
|
|
Pages = {3718-3732}, |
2512 |
|
|
Title = {Molecular Dynamics Simulation of a smectic liquid crystal with atomic detail}, |
2513 |
|
|
Volume = 89, |
2514 |
|
|
Year = 1988} |
2515 |
|
|
|
2516 |
|
|
@article{Holz00, |
2517 |
|
|
Author = {M. Holz and S.~R. Heil and A. Sacco}, |
2518 |
|
|
Journal = {Phys. Chem. Chem. Phys.}, |
2519 |
|
|
Pages = {4740-4742}, |
2520 |
|
|
Title = {Temperature-dependent self-diffusion coefficients of water and six selected molecular liquids for calibration in accurate $^1${\sc h} {\sc nmr pfg} measurements}, |
2521 |
|
|
Volume = 2, |
2522 |
|
|
Year = 2000} |
2523 |
|
|
|
2524 |
|
|
@incollection{Zannoni94, |
2525 |
|
|
Author = {C. Zannoni}, |
2526 |
|
|
Booktitle = {The Molecular Dynamics of Liquid Crstals}, |
2527 |
|
|
Chapter = 6, |
2528 |
|
|
Date-Modified = {2006-02-15 10:12:36 -0500}, |
2529 |
|
|
Editor = {G.~R. Luckhurst and C.~A. Veracini}, |
2530 |
|
|
Pages = {139-169}, |
2531 |
|
|
Publisher = {Kluwer Academic Publishers}, |
2532 |
|
|
Title = {An introduction to the molecular dynamics method and to orientational dynamics in liquid crystals}, |
2533 |
|
|
Year = 1994} |
2534 |
|
|
|
2535 |
|
|
@article{Melchionna93, |
2536 |
|
|
Author = {S. Melchionna and G. Ciccotti and B.~L. Holian}, |
2537 |
|
|
Date-Modified = {2006-02-15 10:28:54 -0500}, |
2538 |
|
|
Journal = {Molecular Physics}, |
2539 |
|
|
Pages = {533-544}, |
2540 |
|
|
Title = {Hoover {\sc npt} dynamics for systems varying in shape and size}, |
2541 |
|
|
Volume = 78, |
2542 |
|
|
Year = 1993} |
2543 |
|
|
|
2544 |
|
|
@article{Fennell04, |
2545 |
|
|
Author = {C.~J. Fennell and J.~D. Gezelter}, |
2546 |
|
|
Date-Modified = {2006-02-15 09:08:04 -0500}, |
2547 |
|
|
Journal = jcp, |
2548 |
|
|
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/MyPapers/Fennell_TempSSDs_04.pdf}, |
2549 |
|
|
Number = 19, |
2550 |
|
|
Pages = {9175-9184}, |
2551 |
|
|
Title = {On the structural and transport properties of the soft sticky dipole(SSD) and related single point water models}, |
2552 |
|
|
Volume = 120, |
2553 |
|
|
Year = 2004} |
2554 |
|
|
|
2555 |
|
|
@article{Klein01, |
2556 |
|
|
Author = {J.~C. Shelley andf M.~Y. Shelley and R.~C. Reeder and S. Bandyopadhyay and M.~L. Klein}, |
2557 |
|
|
Date-Modified = {2006-02-15 10:27:22 -0500}, |
2558 |
|
|
Journal = {J. Phys. Chem. B}, |
2559 |
|
|
Pages = {4464-4470}, |
2560 |
|
|
Title = {A Coarse Grain Model for Phospholipid Simulations}, |
2561 |
|
|
Volume = 105, |
2562 |
|
|
Year = 2001} |
2563 |
|
|
|
2564 |
|
|
@article{Marrink03, |
2565 |
|
|
Author = {S.~J. Marrink and A.~E. Mark}, |
2566 |
|
|
Date-Modified = {2006-03-16 09:54:52 -0500}, |
2567 |
|
|
Journal = {J. Am. Chem. Soc.}, |
2568 |
|
|
Pages = {15233-15242}, |
2569 |
|
|
Title = {Molecular Dynamics Simulation of the Formation, Structure, and Dynamics of Small Phospholipid Vesicles}, |
2570 |
|
|
Volume = 125, |
2571 |
|
|
Year = 2003} |
2572 |
|
|
|
2573 |
|
|
@article{Onsager36, |
2574 |
|
|
Author = {L. Onsager}, |
2575 |
|
|
Journal = jacs, |
2576 |
|
|
Pages = {1486-1493}, |
2577 |
|
|
Title = {Electric Moments of Molecules in Liquids}, |
2578 |
|
|
Volume = 58, |
2579 |
|
|
Year = 1936} |
2580 |
|
|
|
2581 |
gezelter |
3199 |
@article{Carraro1993, |
2582 |
|
|
Author = {Carlo Carraro and David R. Nelson}, |
2583 |
|
|
Journal = pre, |
2584 |
|
|
Number = 4, |
2585 |
|
|
Pages = {3082-3090}, |
2586 |
|
|
Title = {Grain-boundary buckling and spin-glass models of disorder in membranes}, |
2587 |
|
|
Volume = 48, |
2588 |
|
|
Year = 1993} |
2589 |
xsun |
3147 |
|
2590 |
gezelter |
3199 |
@article{Renard1966, |
2591 |
|
|
Author = {R\'emi Renard and Carl W. Garland}, |
2592 |
|
|
Journal = jcp, |
2593 |
|
|
Number = 3, |
2594 |
|
|
Pages = {1125-1129}, |
2595 |
|
|
Title = {Order-Disorder Phenomena. II. Elastic Constants of a Two-Dimensional Ising Model}, |
2596 |
|
|
Volume = 44, |
2597 |
|
|
Year = 1966} |
2598 |
xsun |
3147 |
|
2599 |
gezelter |
3199 |
@article{Zhu2005, |
2600 |
|
|
Author = {Xiaoliang Zhu and F. Tavazza and D.~P. Landau}, |
2601 |
|
|
Journal = prb, |
2602 |
|
|
Pages = 104102, |
2603 |
|
|
Title = {Critical behavior of an elastic Ising antiferromagnet at constant pressure}, |
2604 |
|
|
Volume = 72, |
2605 |
|
|
Year = 2005} |
2606 |
xsun |
3147 |
|
2607 |
gezelter |
3199 |
@article{Zhu2006, |
2608 |
|
|
Author = {Xiaoliang Zhu and D.~P. Landau}, |
2609 |
|
|
Journal = prb, |
2610 |
|
|
Pages = 064115, |
2611 |
|
|
Title = {Critical behavior of an elastic Ising model on a stacked triangular net at constant volume}, |
2612 |
|
|
Volume = 73, |
2613 |
|
|
Year = 2006} |
2614 |
xsun |
3147 |
|
2615 |
gezelter |
3199 |
@article{Jiang2006, |
2616 |
|
|
Author = {Ying Jiang and Thorsten Emig}, |
2617 |
|
|
Journal = prb, |
2618 |
|
|
Pages = 104452, |
2619 |
|
|
Title = {Ordering of geometrically frustrated classical and quantum triangular Ising magnets}, |
2620 |
|
|
Volume = 73, |
2621 |
|
|
Year = 2006} |
2622 |
xsun |
3147 |
|
2623 |
gezelter |
3199 |
@article{Raphael2000, |
2624 |
|
|
Author = {Robert M. Raphael and Aleksander S. Popel and William E. Brownell}, |
2625 |
|
|
Journal = bj, |
2626 |
|
|
Pages = {2844-2862}, |
2627 |
|
|
Title = {A Membrane Bending Model of Outer Hair Cell Electromotility}, |
2628 |
|
|
Volume = 78, |
2629 |
|
|
Year = 2000} |
2630 |
xsun |
3147 |
|
2631 |
gezelter |
3199 |
@article{Todorova2004, |
2632 |
|
|
Author = {L. Todorova and T. Angelov and Y. Marinov and A.~G. Petrov}, |
2633 |
|
|
Journal = {J. Mat. Sci. Mat. Elect.}, |
2634 |
|
|
Pages = {817-818}, |
2635 |
|
|
Title = {Evidence of flexoelectricity in polymer-dispersed liquid crystals}, |
2636 |
|
|
Volume = 14, |
2637 |
|
|
Year = 2004} |
2638 |
xsun |
3147 |
|
2639 |
gezelter |
3199 |
@article{Petrov2006, |
2640 |
|
|
Author = {A.~G. Petrov}, |
2641 |
|
|
Journal = {Anal. Chim. Acta}, |
2642 |
|
|
Pages = {70-83}, |
2643 |
|
|
Title = {Electricity and mechanics of biomembrane systems: Flexoelectricity in living membranes}, |
2644 |
|
|
Year = 2006} |
2645 |
xsun |
3147 |
|
2646 |
gezelter |
3199 |
@article{Seung1988, |
2647 |
|
|
Author = {Seung, H. S. and Nelson, David R.}, |
2648 |
|
|
Doi = {10.1103/PhysRevA.38.1005}, |
2649 |
|
|
Journal = {Phys. Rev. A}, |
2650 |
|
|
Month = {Jul}, |
2651 |
|
|
Number = {2}, |
2652 |
|
|
Numpages = {13}, |
2653 |
|
|
Pages = {1005--1018}, |
2654 |
|
|
Publisher = {American Physical Society}, |
2655 |
|
|
Title = {Defects in flexible membranes with crystalline order}, |
2656 |
|
|
Volume = {38}, |
2657 |
|
|
Year = {1988}} |
2658 |
xsun |
3147 |
|
2659 |
gezelter |
3199 |
@article{Mutz1991, |
2660 |
|
|
Author = {Mutz, M. and Bensimon, D. and Brienne, M. J.}, |
2661 |
|
|
Doi = {10.1103/PhysRevLett.67.923}, |
2662 |
|
|
Journal = {Phys. Rev. Lett.}, |
2663 |
|
|
Month = {Aug}, |
2664 |
|
|
Number = {7}, |
2665 |
|
|
Numpages = {3}, |
2666 |
|
|
Pages = {923--926}, |
2667 |
|
|
Publisher = {American Physical Society}, |
2668 |
|
|
Title = {Wrinkling transition in partially polymerized vesicles}, |
2669 |
|
|
Volume = {67}, |
2670 |
|
|
Year = {1991}} |
2671 |
xsun |
3147 |
|
2672 |
|
|
@article{Harden2006, |
2673 |
gezelter |
3199 |
Author = {J. Harden and B. Mbanga and N. Eber and K. Fodor-Csorba and S. Sprunt and J. T. Gleeson and A. Jakli}, |
2674 |
|
|
Eid = 157802, |
2675 |
|
|
Journal = {Physical Review Letters}, |
2676 |
|
|
Number = 15, |
2677 |
|
|
Numpages = 4, |
2678 |
|
|
Pages = 157802, |
2679 |
|
|
Publisher = {APS}, |
2680 |
|
|
Title = {Giant Flexoelectricity of Bent-Core Nematic Liquid Crystals}, |
2681 |
|
|
Volume = 97, |
2682 |
|
|
Year = 2006} |
2683 |
xsun |
3147 |
|
2684 |
gezelter |
3199 |
@article{Lenz07, |
2685 |
|
|
Author = {Olaf Lenz and Friederike Schmid}, |
2686 |
|
|
Journal = prl, |
2687 |
|
|
Number = 5, |
2688 |
|
|
Pages = 058104, |
2689 |
|
|
Title = {Structure of Symmetric and Asymmetric "Ripple" Phases in Lipid Bilayers}, |
2690 |
|
|
Volume = 98, |
2691 |
|
|
Year = 2007} |
2692 |
xsun |
3147 |
|
2693 |
xsun |
3174 |
@article{Sun2007, |
2694 |
|
|
Author = {Xiuquan Sun and J. Daniel Gezelter}, |
2695 |
|
|
Eid = {031602}, |
2696 |
|
|
Journal = pre, |
2697 |
|
|
Keywords = {Lattice Theory; Membranes}, |
2698 |
|
|
Number = {3}, |
2699 |
|
|
Numpages = {7}, |
2700 |
|
|
Pages = {031602}, |
2701 |
|
|
Publisher = {Aps}, |
2702 |
|
|
Title = {Spontaneous Corrugation of Dipolar Membranes}, |
2703 |
|
|
Url = {Http://Link.Aps.Org/Abstract/Pre/V75/E031602}, |
2704 |
|
|
Volume = {75}, |
2705 |
gezelter |
3199 |
Year = {2007}} |
2706 |
xsun |
3174 |
|
2707 |
gezelter |
3199 |
@article{Tsonchev04, |
2708 |
|
|
Author = {Stefan Tsonchev and George C. Schatz and Mark A. Ratner}, |
2709 |
|
|
Journal = jpcB, |
2710 |
|
|
Pages = {8817-8822}, |
2711 |
|
|
Title = {Electrostatically-Directed Self-Assembly of Cylindrical Peptide Amphiphile Nanostructures}, |
2712 |
|
|
Volume = 108, |
2713 |
|
|
Year = 2004} |
2714 |
xsun |
3174 |
|
2715 |
gezelter |
3199 |
@article{Cleaver96, |
2716 |
|
|
Author = {Douglas J. Cleaver and Christopher M. Care and Michael P. Allen and Maureen P. Neal}, |
2717 |
|
|
Journal = pre, |
2718 |
|
|
Number = 1, |
2719 |
|
|
Pages = {559-567}, |
2720 |
|
|
Title = {Extension and generalization of the Gay-Berne potential}, |
2721 |
|
|
Volume = 54, |
2722 |
|
|
Year = 1996} |
2723 |
xsun |
3174 |
|
2724 |
|
|
@article{Meineke05, |
2725 |
|
|
Author = {M.~A. Meineke and C.~F. {Vardeman II} And T. Lin and C.~J. Fennell and J.~D. Gezelter}, |
2726 |
|
|
Date-Modified = {2007-06-24 09:16:17 -0400}, |
2727 |
|
|
Journal = jcc, |
2728 |
|
|
Pages = {252-271}, |
2729 |
|
|
Title = {$\Mbox{OOPSE: A}$N Open Source Object-Oriented Parallel Simulation Engine for Molecular Dynamics}, |
2730 |
|
|
Volume = 26, |
2731 |
|
|
Year = 2005} |
2732 |
xsun |
3197 |
|
2733 |
gezelter |
3199 |
@article{Tsonchev04II, |
2734 |
|
|
Author = {Stefan Tsonchev and Alessandro Troisi and George C. Schatz and Mark A. Ratner}, |
2735 |
|
|
Journal = jpcB, |
2736 |
|
|
Pages = {15278-15284}, |
2737 |
|
|
Title = {All-Atom Numerical Studies of Self-Assembly of Zwitterionic Peptide Amphiphiles}, |
2738 |
|
|
Volume = 108, |
2739 |
|
|
Year = 2004} |
2740 |
xsun |
3197 |
|
2741 |
gezelter |
3199 |
@article{Ayton01, |
2742 |
gezelter |
3203 |
Author = {Gary Ayton and Scott G. Bardenhagen and Patrick McMurty and Deborah Sulsky and Gregory A. Voth}, |
2743 |
gezelter |
3199 |
Journal = jcp, |
2744 |
|
|
Number = 15, |
2745 |
|
|
Pages = {6913-6924}, |
2746 |
|
|
Title = {Interfacing continuum and molecular dynamics: An application to lipid bilayers}, |
2747 |
|
|
Volume = 114, |
2748 |
|
|
Year = 2001} |
2749 |
xsun |
3197 |
|
2750 |
gezelter |
3199 |
@article{Golubkov06, |
2751 |
|
|
Author = {Pavel A. Golubkov and Rengyu Ren}, |
2752 |
|
|
Journal = jcp, |
2753 |
|
|
Pages = 064103, |
2754 |
|
|
Title = {Generalized coarse-grained model based on point multipole and Gay-Berne potentials}, |
2755 |
|
|
Volume = 125, |
2756 |
|
|
Year = 2006} |