ViewVC Help
View File | Revision Log | Show Annotations | View Changeset | Root Listing
root/group/trunk/mdRipple/mdripple.bib
(Generate patch)

Comparing trunk/mdRipple/mdripple.bib (file contents):
Revision 3199 by gezelter, Thu Jul 26 19:47:06 2007 UTC vs.
Revision 3351 by gezelter, Fri Feb 29 22:02:20 2008 UTC

# Line 1 | Line 1
1 + %% This BibTeX bibliography file was created using BibDesk.
2 + %% http://bibdesk.sourceforge.net/
3  
2 – %% Created for Dan Gezelter at 2007-07-26 11:42:09 -0400
4  
5 + %% Created for Dan Gezelter at 2007-10-30 11:45:23 -0400
6  
7 +
8   %% Saved with string encoding Western (ASCII)
9  
10  
# Line 31 | Line 34
34  
35   @string{mp = {Mol. Phys.}}
36  
37 + @string{pccp = {Phys. Chem. Chem. Phys.}}
38 +
39   @string{pnas = {Proc. Natl. Acad. Sci. USA}}
40  
41   @string{pra = {Phys. Rev. A}}
# Line 44 | Line 49
49   @string{rmp = {Rev. Mod. Phys.}}
50  
51  
52 + @article{Benninger:2005qy,
53 +        Abstract = {The plasma membrane of cells is an ordered environment, giving rise to anisotropic orientation and restricted motion of molecules and proteins residing in the membrane. At the same time as being an organized matrix of defined structure, the cell membrane is heterogeneous and dynamic. Here we present a method where we use fluorescence imaging of linear dichroism to measure the orientation of molecules relative to the cell membrane. By detecting linear dichroism as well as fluorescence anisotropy, the orientation parameters are separated from dynamic properties such as rotational diffusion and homo energy transfer (energy migration). The sensitivity of the technique is enhanced by using two-photon excitation for higher photo-selection compared to single photon excitation. We show here that we can accurately image lipid organization in whole cell membranes and in delicate structures such as membrane nanotubes connecting two cells. The speed of our wide-field imaging system makes it possible to image changes in orientation and anisotropy occurring on a subsecond timescale. This is demonstrated by time-lapse studies showing that cholesterol depletion rapidly disrupts the orientation of a fluorophore located within the hydrophobic region of the cell membrane but not of a surface bound probe. This is consistent with cholesterol having an important role in stabilizing and ordering the lipid tails within the plasma membrane. },
54 +        Annote = {10.1529/biophysj.104.050096},
55 +        Author = {Benninger, Richard K. P. and Onfelt, Bjorn and Neil, Mark A. A. and Davis, Daniel M. and French, Paul M. W.},
56 +        Date-Added = {2007-10-30 11:44:02 -0400},
57 +        Date-Modified = {2007-10-30 11:44:02 -0400},
58 +        Journal = {Biophysical Journal},
59 +        Journal1 = {Biophys. J.},
60 +        Number = {1},
61 +        Pages = {609--622},
62 +        Title = {Fluorescence Imaging of Two-Photon Linear Dichroism: Cholesterol Depletion Disrupts Molecular Orientation in Cell Membranes},
63 +        Ty = {JOUR},
64 +        Url = {http://www.biophysj.org/cgi/content/abstract/88/1/609},
65 +        Volume = {88},
66 +        Year = {2005}}
67 +
68 + @article{NorbertKucerka06012006,
69 +        Abstract = {X-ray data are presented for the benchmark dipalmitoylphosphatidylcholine lipid bilayer in the most biologically relevant state in which the bilayers are fully hydrated and in the fluid (liquid-crystalline) phase. Form factors F(qz) are obtained from a combination of two sample preparations, oriented stacks of bilayers for qz extending to 0.85 A-1 and unilamellar vesicles for smaller qz. Modeling obtains the electron density profile and values for the area per molecule, for the locations of the component groups, and for the different types of thicknesses of the bilayer, such as the hydrocarbon thickness and the steric thickness.
70 + },
71 +        Author = {Kucerka, Norbert and Tristram-Nagle, Stephanie and Nagle, John F.},
72 +        Date-Added = {2007-08-02 15:07:04 -0400},
73 +        Date-Modified = {2007-08-02 15:07:04 -0400},
74 +        Doi = {10.1529/biophysj.106.086017},
75 +        Eprint = {http://www.biophysj.org/cgi/reprint/90/11/L83.pdf},
76 +        Journal = {Biophys. J.},
77 +        Number = {11},
78 +        Pages = {L83-85},
79 +        Title = {{Closer Look at Structure of Fully Hydrated Fluid Phase DPPC Bilayers}},
80 +        Url = {http://www.biophysj.org/cgi/content/abstract/90/11/L83},
81 +        Volume = {90},
82 +        Year = {2006}}
83 +
84 + @article{NorbertKucerka04012005,
85 +        Abstract = {Quantitative structures of the fully hydrated fluid phases of dimyristoylphosphatidylcholine (DMPC) and dilauroylphosphatidylcholine (DLPC) were obtained at 30{degrees}C. Data for the relative form factors F(qz) for DMPC were obtained using a combination of four methods. 1), Volumetric data provided F(0). 2), Diffuse x-ray scattering from oriented stacks of bilayers provided relative form factors |F(qz)| for high qz, 0.22 < qz < 0.8 A-1. 3), X-ray scattering from extruded unilamellar vesicles with diameter 600 A provided |F(qz)| for low qz, 0.1 < qz < 0.3 A-1. 4), Previous measurements using a liquid crystallographic x-ray method provided |F(2{pi}h/D)| for h = 1 and 2 for a range of nearly fully hydrated D-spacings. The data from method 4 overlap and validate the new unilamellar vesicles data for DMPC, so method 4 is not required for DLPC or future studies. We used hybrid electron density models to obtain structural results from these form factors. Comparison of the model electron density profiles with that of gel phase DMPC provides areas per lipid A, 60.6 {+/-} 0.5 A2 for DMPC and 63.2 {+/-} 0.5 A2 for DLPC. Constraints on the model provided by volume measurements and component volumes obtained from simulations put the electron density profiles {rho}(z) and the corresponding form factors F(qz) on absolute scales. Various thicknesses, such as the hydrophobic thickness and the steric thickness, are obtained and compared to literature values.
86 + },
87 +        Author = {Kucerka, Norbert and Liu, Yufeng and Chu, Nanjun and Petrache, Horia I. and Tristram-Nagle, Stephanie and Nagle, John F.},
88 +        Date-Added = {2007-08-02 15:04:34 -0400},
89 +        Date-Modified = {2007-08-02 15:04:34 -0400},
90 +        Doi = {10.1529/biophysj.104.056606},
91 +        Eprint = {http://www.biophysj.org/cgi/reprint/88/4/2626.pdf},
92 +        Journal = {Biophys. J.},
93 +        Number = {4},
94 +        Pages = {2626-2637},
95 +        Title = {{Structure of Fully Hydrated Fluid Phase DMPC and DLPC Lipid Bilayers Using X-Ray Scattering from Oriented Multilamellar Arrays and from Unilamellar Vesicles}},
96 +        Url = {http://www.biophysj.org/cgi/content/abstract/88/4/2626},
97 +        Volume = {88},
98 +        Year = {2005}}
99 +
100   @article{Ayton95,
101          Author = {G. Ayton and M.~J.~P. Gingras and G.~N. Patey},
102          Journal = prl,
# Line 89 | Line 142
142          Year = 1996}
143  
144   @article{Kaasgaard03,
145 <        Author = {Thomas Kaasgaard and Chad Leidy and John H. Crowe and Ole G. Mouritsen and Kent J\o rgensen},
145 >        Author = {Thomas Kaasgaard and Chad Leidy and John H. Crowe and Ole G. Mouritsen and Kent J{\o}rgensen},
146          Journal = bj,
147          Number = 1,
148          Pages = {350-360},
# Line 2707 | Line 2760
2760          Year = 2004}
2761  
2762   @article{Ayton01,
2763 <        Author = {Gary Ayton and Scott G. Bardenhagen and Patrick McMurty and Deborah Sulsky and Gregory A. voth},
2763 >        Author = {Gary Ayton and Scott G. Bardenhagen and Patrick McMurty and Deborah Sulsky and Gregory A. Voth},
2764          Journal = jcp,
2765          Number = 15,
2766          Pages = {6913-6924},
# Line 2722 | Line 2775
2775          Title = {Generalized coarse-grained model based on point multipole and Gay-Berne potentials},
2776          Volume = 125,
2777          Year = 2006}
2778 +
2779 + @article{Kranenburg2005,
2780 +        Author = {Marieke Kranenburg and Berend Smit},
2781 +        Journal = jpcb,
2782 +        Pages = {6553-6563},
2783 +        Title = {Phase Behavior of Model Lipid Bilayers},
2784 +        Volume = 109,
2785 +        Year = 2005}
2786 +
2787 + @article{Sparrman2003,
2788 +        Author = {Tobias Sparrman and Per-Olof Westlund},
2789 +        Journal = pccp,
2790 +        Pages = {2114-2121},
2791 +        Title = {An NMR line shape and relaxation analysis of heavy water powder spectra of the $L_\alpha$, $L_{\beta'}$ and $P_{\beta'}$ phases in the DPPC/water system},
2792 +        Volume = 5,
2793 +        Year = 2003}
2794 +
2795 + @article{Tenchov2001,
2796 +        Author = {Boris Tenchov and Rumiana Koynova and Gert Rapp},
2797 +        Journal = bj,
2798 +        Pages = {1873-1890},
2799 +        Title = {New Ordered Metastable Phases between the Gel and Subgel Phases in Hydrated Phospholipids},
2800 +        Volume = 80,
2801 +        Year = 2001}

Diff Legend

– Removed lines
+ Added lines
< Changed lines
> Changed lines