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1 %\documentclass[aps,pre,twocolumn,amssymb,showpacs,floatfix]{revtex4}
2 \documentclass[aps,pre,preprint,amssymb,showpacs]{revtex4}
3 \usepackage{graphicx}
4
5 \begin{document}
6 \renewcommand{\thefootnote}{\fnsymbol{footnote}}
7 \renewcommand{\theequation}{\arabic{section}.\arabic{equation}}
8
9 %\bibliographystyle{aps}
10
11 \title{Dipolar Ordering of the Ripple Phase in Lipid Membranes}
12 \author{Xiuquan Sun and J. Daniel Gezelter}
13 \email[E-mail:]{gezelter@nd.edu}
14 \affiliation{Department of Chemistry and Biochemistry,\\
15 University of Notre Dame, \\
16 Notre Dame, Indiana 46556}
17
18 \date{\today}
19
20 \begin{abstract}
21 The ripple phase in phosphatidylcholine (PC) bilayers has never been
22 completely explained.
23 \end{abstract}
24
25 \pacs{}
26 \maketitle
27
28 \section{Introduction}
29 \label{sec:Int}
30 Fully hydrated lipids will aggregate spontaneously to form bilayers
31 which exhibit a variety of phases depending on their temperatures and
32 compositions. Among these phases, a periodic rippled phase
33 ($P_{\beta'}$) appears as an intermediate phase between the gel
34 ($L_\beta$) and fluid ($L_{\alpha}$) phases for relatively pure
35 phosphatidylcholine (PC) bilayers. The ripple phase has attracted
36 substantial experimental interest over the past 30 years. Most
37 structural information of the ripple phase has been obtained by the
38 X-ray diffraction~\cite{Sun96,Katsaras00} and freeze-fracture electron
39 microscopy (FFEM).~\cite{Copeland80,Meyer96} Recently, Kaasgaard {\it
40 et al.} used atomic force microscopy (AFM) to observe ripple phase
41 morphology in bilayers supported on mica.~\cite{Kaasgaard03} The
42 experimental results provide strong support for a 2-dimensional
43 hexagonal packing lattice of the lipid molecules within the ripple
44 phase. This is a notable change from the observed lipid packing
45 within the gel phase.~\cite{Cevc87}
46
47 A number of theoretical models have been presented to explain the
48 formation of the ripple phase. Marder {\it et al.} used a
49 curvature-dependent Landau-de Gennes free-energy functional to predict
50 a rippled phase.~\cite{Marder84} This model and other related continuum
51 models predict higher fluidity in convex regions and that concave
52 portions of the membrane correspond to more solid-like regions.
53 Carlson and Sethna used a packing-competition model (in which head
54 groups and chains have competing packing energetics) to predict the
55 formation of a ripple-like phase. Their model predicted that the
56 high-curvature portions have lower-chain packing and correspond to
57 more fluid-like regions. Goldstein and Leibler used a mean-field
58 approach with a planar model for {\em inter-lamellar} interactions to
59 predict rippling in multilamellar phases.~\cite{Goldstein88} McCullough
60 and Scott proposed that the {\em anisotropy of the nearest-neighbor
61 interactions} coupled to hydrophobic constraining forces which
62 restrict height differences between nearest neighbors is the origin of
63 the ripple phase.~\cite{McCullough90} Lubensky and MacKintosh
64 introduced a Landau theory for tilt order and curvature of a single
65 membrane and concluded that {\em coupling of molecular tilt to membrane
66 curvature} is responsible for the production of
67 ripples.~\cite{Lubensky93} Misbah, Duplat and Houchmandzadeh proposed
68 that {\em inter-layer dipolar interactions} can lead to ripple
69 instabilities.~\cite{Misbah98} Heimburg presented a {\em coexistence
70 model} for ripple formation in which he postulates that fluid-phase
71 line defects cause sharp curvature between relatively flat gel-phase
72 regions.~\cite{Heimburg00} Kubica has suggested that a lattice model of
73 polar head groups could be valuable in trying to understand bilayer
74 phase formation.~\cite{Kubica02} Bannerjee used Monte Carlo simulations
75 of lamellar stacks of hexagonal lattices to show that large headgroups
76 and molecular tilt with respect to the membrane normal vector can
77 cause bulk rippling.~\cite{Bannerjee02}
78
79 In contrast, few large-scale molecular modelling studies have been
80 done due to the large size of the resulting structures and the time
81 required for the phases of interest to develop. With all-atom (and
82 even unified-atom) simulations, only one period of the ripple can be
83 observed and only for timescales in the range of 10-100 ns. One of
84 the most interesting molecular simulations was carried out by De Vries
85 {\it et al.}~\cite{deVries05}. According to their simulation results,
86 the ripple consists of two domains, one resembling the gel bilayer,
87 while in the other, the two leaves of the bilayer are fully
88 interdigitated. The mechanism for the formation of the ripple phase
89 suggested by their work is a packing competition between the head
90 groups and the tails of the lipid molecules.\cite{Carlson87} Recently,
91 the ripple phase has also been studied by the XXX group using Monte
92 Carlo simulations.\cite{Lenz07} Their structures are similar to the De
93 Vries {\it et al.} structures except that the connection between the
94 two leaves of the bilayer is a narrow interdigitated line instead of
95 the fully interdigitated domain. The symmetric ripple phase was also
96 observed by Lenz {\it et al.}, and their work supports other claims
97 that the mismatch between the size of the head group and tail of the
98 lipid molecules is the driving force for the formation of the ripple
99 phase. Ayton and Voth have found significant undulations in
100 zero-surface-tension states of membranes simulated via dissipative
101 particle dynamics, but their results are consistent with purely
102 thermal undulations.~\cite{Ayton02}
103
104 Although the organization of the tails of lipid molecules are
105 addressed by these molecular simulations and the packing competition
106 between headgroups and tails is strongly implicated as the primary
107 driving force for ripple formation, questions about the ordering of
108 the head groups in ripple phase has not been settled.
109
110 In a recent paper, we presented a simple ``web of dipoles'' spin
111 lattice model which provides some physical insight into relationship
112 between dipolar ordering and membrane buckling.\cite{Sun2007} We found
113 that dipolar elastic membranes can spontaneously buckle, forming
114 ripple-like topologies. The driving force for the buckling in dipolar
115 elastic membranes the antiferroelectric ordering of the dipoles, and
116 this was evident in the ordering of the dipole director axis
117 perpendicular to the wave vector of the surface ripples. A similiar
118 phenomenon has also been observed by Tsonchev {\it et al.} in their
119 work on the spontaneous formation of dipolar molecules into curved
120 nano-structures.\cite{Tsonchev04}
121
122 In this paper, we construct a somewhat more realistic molecular-scale
123 lipid model than our previous ``web of dipoles'' and use molecular
124 dynamics simulations to elucidate the role of the head group dipoles
125 in the formation and morphology of the ripple phase. We describe our
126 model and computational methodology in section \ref{sec:method}.
127 Details on the simulations are presented in section
128 \ref{sec:experiment}, with results following in section
129 \ref{sec:results}. A final discussion of the role of dipolar heads in
130 the ripple formation can be found in section
131 \ref{sec:discussion}.
132
133 \section{Computational Model}
134 \label{sec:method}
135
136 Our simple molecular-scale lipid model for studying the ripple phase
137 is based on two facts: one is that the most essential feature of lipid
138 molecules is their amphiphilic structure with polar head groups and
139 non-polar tails. Another fact is that the majority of lipid molecules
140 in the ripple phase are relatively rigid (i.e. gel-like) which makes
141 some fraction of the details of the chain dynamics negligible. Figure
142 \ref{fig:lipidModels} shows the molecular strucure of a DPPC
143 molecule, as well as atomistic and molecular-scale representations of
144 a DPPC molecule. The hydrophilic character of the head group is
145 largely due to the separation of charge between the nitrogen and
146 phosphate groups. The zwitterionic nature of the PC headgroups leads
147 to abnormally large dipole moments (as high as 20.6 D), and this
148 strongly polar head group interacts strongly with the solvating water
149 layers immediately surrounding the membrane. The hydrophobic tail
150 consists of fatty acid chains. In our molecular scale model, lipid
151 molecules have been reduced to these essential features; the fatty
152 acid chains are represented by an ellipsoid with a dipolar ball
153 perched on one end to represent the effects of the charge-separated
154 head group. In real PC lipids, the direction of the dipole is
155 nearly perpendicular to the tail, so we have fixed the direction of
156 the point dipole rigidly in this orientation.
157
158 \begin{figure}[htb]
159 \centering
160 \includegraphics[width=\linewidth]{lipidModels}
161 \caption{Three different representations of DPPC lipid molecules,
162 including the chemical structure, an atomistic model, and the
163 head-body ellipsoidal coarse-grained model used in this
164 work.\label{fig:lipidModels}}
165 \end{figure}
166
167 The ellipsoidal portions of the model interact via the Gay-Berne
168 potential which has seen widespread use in the liquid crystal
169 community. In its original form, the Gay-Berne potential was a single
170 site model for the interactions of rigid ellipsoidal
171 molecules.\cite{Gay81} It can be thought of as a modification of the
172 Gaussian overlap model originally described by Berne and
173 Pechukas.\cite{Berne72} The potential is constructed in the familiar
174 form of the Lennard-Jones function using orientation-dependent
175 $\sigma$ and $\epsilon$ parameters,
176 \begin{eqnarray*}
177 V_{ij}({\mathbf{\hat u}_i}, {\mathbf{\hat u}_j}, {\mathbf{\hat
178 r}_{ij}}) = 4\epsilon ({\mathbf{\hat u}_i}, {\mathbf{\hat u}_j},
179 {\mathbf{\hat r}_{ij}})\left[\left(\frac{\sigma_0}{r_{ij}-\sigma({\mathbf{\hat u}_i},
180 {\mathbf{\hat u}_j}, {\mathbf{\hat r}_{ij}})+\sigma_0}\right)^{12}
181 -\left(\frac{\sigma_0}{r_{ij}-\sigma({\mathbf{\hat u}_i}, {\mathbf{\hat u}_j},
182 {\mathbf{\hat r}_{ij}})+\sigma_0}\right)^6\right]
183 \label{eq:gb}
184 \end{eqnarray*}
185
186
187
188 The range $(\sigma({\bf \hat{u}}_{i},{\bf \hat{u}}_{j},{\bf
189 \hat{r}}))$, and strength $(\epsilon({\bf \hat{u}}_{i},{\bf
190 \hat{u}}_{j},{\bf \hat{r}}))$ parameters
191 are dependent on the relative orientations of the two molecules (${\bf
192 \hat{u}}_{i},{\bf \hat{u}}_{j}$) as well as the direction of the
193 intermolecular separation (${\bf \hat{r}}$). The functional forms for
194 $\sigma({\bf
195 \hat{u}}_{i},{\bf
196 \hat{u}}_{j},{\bf \hat{r}})$ and $\epsilon({\bf \hat{u}}_{i},{\bf
197 \hat{u}}_{j},{\bf \hat{r}}))$ are given elsewhere
198 and will not be repeated here. However, $\epsilon$ and $\sigma$ are
199 governed by two anisotropy parameters,
200 \begin {equation}
201 \begin{array}{rcl}
202 \chi & = & \frac
203 {(\sigma_{e}/\sigma_{s})^2-1}{(\sigma_{e}/\sigma_{s})^2+1} \\ \\
204 \chi\prime & = & \frac {1-(\epsilon_{e}/\epsilon_{s})^{1/\mu}}{1+(\epsilon_{e}/
205 \epsilon_{s})^{1/\mu}}
206 \end{array}
207 \end{equation}
208 In these equations, $\sigma$ and $\epsilon$ refer to the point of
209 closest contact and the depth of the well in different orientations of
210 the two molecules. The subscript $s$ refers to the {\it side-by-side}
211 configuration where $\sigma$ has it's smallest value,
212 $\sigma_{s}$, and where the potential well is $\epsilon_{s}$ deep.
213 The subscript $e$ refers to the {\it end-to-end} configuration where
214 $\sigma$ is at it's largest value, $\sigma_{e}$ and where the well
215 depth, $\epsilon_{e}$ is somewhat smaller than in the side-by-side
216 configuration. For the prolate ellipsoids we are using, we have
217 \begin{equation}
218 \begin{array}{rcl}
219 \sigma_{s} & < & \sigma_{e} \\
220 \epsilon_{s} & > & \epsilon_{e}
221 \end{array}
222 \end{equation}
223 Ref. \onlinecite{Luckhurst90} has a particularly good explanation of the
224 choice of the Gay-Berne parameters $\mu$ and $\nu$ for modeling liquid
225 crystal molecules.
226
227 The breadth and length of tail are $\sigma_0$, $3\sigma_0$,
228 corresponding to a shape anisotropy of 3 for the chain portion of the
229 molecule. In principle, this could be varied to allow for modeling of
230 longer or shorter chain lipid molecules.
231
232 To take into account the permanent dipolar interactions of the
233 zwitterionic head groups, we place fixed dipole moments $\mu_{i}$ at
234 one end of the Gay-Berne particles. The dipoles will be oriented at
235 an angle $\theta = \pi / 2$ relative to the major axis. These dipoles
236 are protected by a head ``bead'' with a range parameter which we have
237 varied between $1.20\sigma_0$ and $1.41\sigma_0$. The head groups
238 interact with each other using a combination of Lennard-Jones,
239 \begin{eqnarray*}
240 V_{ij} = 4\epsilon \left[\left(\frac{\sigma_h}{r_{ij}}\right)^{12} -
241 \left(\frac{\sigma_h}{r_{ij}}\right)^6\right],
242 \end{eqnarray*}
243 and dipole,
244 \begin{eqnarray*}
245 V_{ij} = \frac{|\mu|^2}{4 \pi \epsilon_0 r_{ij}^3}
246 \left[ \hat{\bf u}_i \cdot \hat{\bf u}_j - 3 (\hat{\bf u}_i \cdot
247 \hat{\bf r}_{ij})(\hat{\bf u}_j \cdot \hat{\bf r}_{ij}) \right]
248 \end{eqnarray*}
249 potentials.
250 In these potentials, $\mathbf{\hat u}_i$ is the unit vector pointing
251 along dipole $i$ and $\mathbf{\hat r}_{ij}$ is the unit vector
252 pointing along the inter-dipole vector $\mathbf{r}_{ij}$.
253
254 For the interaction between nonequivalent uniaxial ellipsoids (in this
255 case, between spheres and ellipsoids), the range parameter is
256 generalized as\cite{Cleaver96}
257 \begin{eqnarray*}
258 \sigma({\mathbf{\hat u}_i}, {\mathbf{\hat u}_j}, {\mathbf{\hat r}_{ij}}) =
259 {\sigma_{0}} \left(1-\frac{1}{2}\chi\left[\frac{(\alpha{\mathbf{\hat r}_{ij}}
260 \cdot {\mathbf{\hat u}_i} + \alpha^{-1}{\mathbf{\hat r}_{ij}} \cdot {\mathbf{\hat
261 u}_j})^2}{1+\chi({\mathbf{\hat u}_i} \cdot {\mathbf{\hat u}_j})} +
262 \frac{(\alpha{\mathbf{\hat r}_{ij}} \cdot {\mathbf{\hat u}_i} - \alpha^{-1}{\mathbf{\hat r}_{ij}}
263 \cdot {\mathbf{\hat u}_j})^2}{1-\chi({\mathbf{\hat u}_i} \cdot
264 {\mathbf{\hat u}_j})} \right] \right)^{-\frac{1}{2}}
265 \end{eqnarray*}
266 where $\alpha$ is given by
267 \begin{eqnarray*}
268 \alpha^2 =
269 \left[\frac{\left({\sigma_e}_i^2-{\sigma_s}_i^2\right)\left({\sigma_e}_j^2+{\sigma_s}_i^2\right)}{\left({\sigma_e}_j^2-{\sigma_s}_j^2\right)\left({\sigma_e}_i^2+{\sigma_s}_j^2\right)}
270 \right]^{\frac{1}{2}}
271 \end{eqnarray*}
272 the strength parameter has been adjusted as suggested by Cleaver {\it
273 et al.}\cite{Cleaver96} A switching function has been applied to all
274 potentials to smoothly turn off the interactions between a range of $22$ and $25$ \AA.
275
276 The solvent model in our simulations is identical to one used by XXX
277 in their dissipative particle dynamics (DPD) simulation of lipid
278 bilayers.]cite{XXX} This solvent bead is a single site that represents
279 four water molecules (m = 72 amu) and has comparable density and
280 diffusive behavior to liquid water. However, since there are no
281 electrostatic sites on these beads, this solvent model cannot
282 replicate the dielectric properties of water.
283 \begin{table*}
284 \begin{minipage}{\linewidth}
285 \begin{center}
286 \caption{}
287 \begin{tabular}{lccc}
288 \hline
289 N/A & Head & Chain & Solvent \\
290 \hline
291 $\sigma_0$ (\AA) & varied & 4.6 & 4.7 \\
292 l (aspect ratio) & N/A & 3 & N/A \\
293 $\epsilon_0$ (kcal/mol) & 0.185 & 1.0 & 0.8 \\
294 $\epsilon_e$ (aspect ratio) & N/A & 0.2 & N/A \\
295 M (amu) & 196 & 760 & 72.06112 \\
296 $I_{xx}$, $I_{yy}$, $I_{zz}$ (amu \AA$^2$) & 1125, 1125, 0 & 45000, 45000, 9000 & N/A \\
297 $\mu$ (Debye) & varied & N/A & N/A \\
298 \end{tabular}
299 \label{tab:parameters}
300 \end{center}
301 \end{minipage}
302 \end{table*}
303
304 \begin{figure}[htb]
305 \centering
306 \includegraphics[width=\linewidth]{2lipidModel}
307 \caption{The parameters defining the behavior of the lipid
308 models. $\sigma_h / \sigma_0$ is the ratio of the head group to body
309 diameter. Molecular bodies had a fixed aspect ratio of 3.0. The
310 solvent model was a simplified 4-water bead ($\sigma_w = 1.02
311 \sigma_0$) that has been used in other coarse-grained (DPD) simulations.
312 The dipolar strength (and the temperature and pressure) were the only
313 other parameters that were varied
314 systematically.\label{fig:lipidModel}}
315 \end{figure}
316
317 \section{Experimental Methodology}
318 \label{sec:experiment}
319
320 To create unbiased bilayers, all simulations were started from two
321 perfectly flat monolayers separated by a 20 \AA\ gap between the
322 molecular bodies of the upper and lower leaves. The separated
323 monolayers were evolved in a vaccum with $x-y$ anisotropic pressure
324 coupling. The length of $z$ axis of the simulations was fixed and a
325 constant surface tension was applied to enable real fluctuations of
326 the bilayer. Periodic boundaries were used, and $480-720$ lipid
327 molecules were present in the simulations depending on the size of the
328 head beads. The two monolayers spontaneously collapse into bilayer
329 structures within 100 ps, and following this collapse, all systems
330 were equlibrated for $100$ ns at $300$ K.
331
332 The resulting structures were then solvated at a ratio of $6$ DPD
333 solvent beads (24 water molecules) per lipid. These configurations
334 were then equilibrated for another $30$ ns. All simulations with
335 solvent were carried out at constant pressure ($P=1$ atm) by $3$D
336 anisotropic coupling, and constant surface tension ($\gamma=0.015$
337 UNIT). Given the absence of fast degrees of freedom in this model, a
338 timestep of $50$ fs was utilized. Data collection for structural
339 properties of the bilayers was carried out during a final 5 ns run
340 following the solvent equilibration. All simulations were performed
341 using the OOPSE molecular modeling program.\cite{Meineke05}
342
343 \section{Results}
344 \label{sec:results}
345
346 Snapshots in Figure \ref{fig:phaseCartoon} show that the membrane is
347 more corrugated increasing size of the head groups. The surface is
348 nearly flat when $\sigma_h=1.20\sigma_0$. With
349 $\sigma_h=1.28\sigma_0$, although the surface is still flat, the
350 bilayer starts to splay inward; the upper leaf of the bilayer is
351 connected to the lower leaf with an interdigitated line defect. Two
352 periodicities with $100$ \AA\ width were observed in the
353 simulation. This structure is very similiar to the structure observed
354 by de Vries and Lenz {\it et al.}. The same basic structure is also
355 observed when $\sigma_h=1.41\sigma_0$, but the wavelength of the
356 surface corrugations depends sensitively on the size of the ``head''
357 beads. From the undulation spectrum, the corrugation is clearly
358 non-thermal.
359 \begin{figure}[htb]
360 \centering
361 \includegraphics[width=\linewidth]{phaseCartoon}
362 \caption{A sketch to discribe the structure of the phases observed in
363 our simulations.\label{fig:phaseCartoon}}
364 \end{figure}
365
366 When $\sigma_h=1.35\sigma_0$, we observed another corrugated surface
367 morphology. This structure is different from the asymmetric rippled
368 surface; there is no interdigitation between the upper and lower
369 leaves of the bilayer. Each leaf of the bilayer is broken into several
370 hemicylinderical sections, and opposite leaves are fitted together
371 much like roof tiles. Unlike the surface in which the upper
372 hemicylinder is always interdigitated on the leading or trailing edge
373 of lower hemicylinder, the symmetric ripple has no prefered direction.
374 The corresponding cartoons are shown in Figure
375 \ref{fig:phaseCartoon} for elucidation of the detailed structures of
376 different phases. Figure \ref{fig:phaseCartoon} (a) is the flat phase,
377 (b) is the asymmetric ripple phase corresponding to the lipid
378 organization when $\sigma_h=1.28\sigma_0$ and $\sigma_h=1.41\sigma_0$,
379 and (c) is the symmetric ripple phase observed when
380 $\sigma_h=1.35\sigma_0$. In symmetric ripple phase, the bilayer is
381 continuous everywhere on the whole membrane, however, in asymmetric
382 ripple phase, the bilayer is intermittent domains connected by thin
383 interdigitated monolayer which consists of upper and lower leaves of
384 the bilayer.
385 \begin{table*}
386 \begin{minipage}{\linewidth}
387 \begin{center}
388 \caption{}
389 \begin{tabular}{lccc}
390 \hline
391 $\sigma_h/\sigma_0$ & type of phase & $\lambda/\sigma_0$ & $A/\sigma_0$\\
392 \hline
393 1.20 & flat & N/A & N/A \\
394 1.28 & asymmetric flat & 21.7 & N/A \\
395 1.35 & symmetric ripple & 17.2 & 2.2 \\
396 1.41 & asymmetric ripple & 15.4 & 1.5 \\
397 \end{tabular}
398 \label{tab:property}
399 \end{center}
400 \end{minipage}
401 \end{table*}
402
403 The membrane structures and the reduced wavelength $\lambda/\sigma_0$,
404 reduced amplitude $A/\sigma_0$ of the ripples are summerized in Table
405 \ref{tab:property}. The wavelength range is $15~21$ and the amplitude
406 is $1.5$ for asymmetric ripple and $2.2$ for symmetric ripple. These
407 values are consistent to the experimental results. Note, the
408 amplitudes are underestimated without the melted tails in our
409 simulations.
410
411 \begin{figure}[htb]
412 \centering
413 \includegraphics[width=\linewidth]{topDown}
414 \caption{Top views of the flat (upper), asymmetric ripple (middle),
415 and symmetric ripple (lower) phases. Note that the head-group dipoles
416 have formed head-to-tail chains in all three of these phases, but in
417 the two rippled phases, the dipolar chains are all aligned
418 {\it perpendicular} to the direction of the ripple. The flat membrane
419 has multiple point defects in the dipolar orientational ordering, and
420 the dipolar ordering on the lower leaf of the bilayer can be in a
421 different direction from the upper leaf.\label{fig:topView}}
422 \end{figure}
423
424 The $P_2$ order paramters (for molecular bodies and head group
425 dipoles) have been calculated to clarify the ordering in these phases
426 quantatively. $P_2=1$ means a perfectly ordered structure, and $P_2=0$
427 implies orientational randomization. Figure \ref{fig:rP2} shows the
428 $P_2$ order paramter of the dipoles on head group rising with
429 increasing head group size. When the heads of the lipid molecules are
430 small, the membrane is flat. The dipolar ordering is essentially
431 frustrated on orientational ordering in this circumstance. Figure
432 \ref{fig:topView} shows the snapshots of the top view for the flat system
433 ($\sigma_h=1.20\sigma$) and rippled system
434 ($\sigma_h=1.41\sigma$). The pointing direction of the dipoles on the
435 head groups are represented by two colored half spheres from blue to
436 yellow. For flat surfaces, the system obviously shows frustration on
437 the dipolar ordering, there are kinks on the edge of defferent
438 domains. Another reason is that the lipids can move independently in
439 each monolayer, it is not nessasory for the direction of dipoles on
440 one leaf is consistant to another layer, which makes total order
441 parameter is relatively low. With increasing head group size, the
442 surface is corrugated, and dipoles do not move as freely on the
443 surface. Therefore, the translational freedom of lipids in one layer
444 is dependent upon the position of lipids in another layer, as a
445 result, the symmetry of the dipoles on head group in one layer is tied
446 to the symmetry in the other layer. Furthermore, as the membrane
447 deforms from two to three dimensions due to the corrugation, the
448 symmetry of the ordering for the dipoles embedded on each leaf is
449 broken. The dipoles then self-assemble in a head-tail configuration,
450 and the order parameter increases dramaticaly. However, the total
451 polarization of the system is still close to zero. This is strong
452 evidence that the corrugated structure is an antiferroelectric
453 state. From the snapshot in Figure \ref{}, the dipoles arrange as
454 arrays along $Y$ axis and fall into head-to-tail configuration in each
455 line, but every $3$ or $4$ lines of dipoles change their direction
456 from neighbour lines. The system shows antiferroelectric
457 charactoristic as a whole. The orientation of the dipolar is always
458 perpendicular to the ripple wave vector. These results are consistent
459 with our previous study on dipolar membranes.
460
461 The ordering of the tails is essentially opposite to the ordering of
462 the dipoles on head group. The $P_2$ order parameter decreases with
463 increasing head size. This indicates the surface is more curved with
464 larger head groups. When the surface is flat, all tails are pointing
465 in the same direction; in this case, all tails are parallel to the
466 normal of the surface,(making this structure remindcent of the
467 $L_{\beta}$ phase. Increasing the size of the heads, results in
468 rapidly decreasing $P_2$ ordering for the molecular bodies.
469 \begin{figure}[htb]
470 \centering
471 \includegraphics[width=\linewidth]{rP2}
472 \caption{The $P_2$ order parameter as a funtion of the ratio of
473 $\sigma_h$ to $\sigma_0$.\label{fig:rP2}}
474 \end{figure}
475
476 We studied the effects of the interactions between head groups on the
477 structure of lipid bilayer by changing the strength of the dipole.
478 Figure \ref{fig:sP2} shows how the $P_2$ order parameter changes with
479 increasing strength of the dipole. Generally the dipoles on the head
480 group are more ordered by increase in the strength of the interaction
481 between heads and are more disordered by decreasing the interaction
482 stength. When the interaction between the heads is weak enough, the
483 bilayer structure does not persist; all lipid molecules are solvated
484 directly in the water. The critial value of the strength of the dipole
485 depends on the head size. The perfectly flat surface melts at $5$
486 $0.03$ debye, the asymmetric rippled surfaces melt at $8$ $0.04$
487 $0.03$ debye, the symmetric rippled surfaces melt at $10$ $0.04$
488 debye. The ordering of the tails is the same as the ordering of the
489 dipoles except for the flat phase. Since the surface is already
490 perfect flat, the order parameter does not change much until the
491 strength of the dipole is $15$ debye. However, the order parameter
492 decreases quickly when the strength of the dipole is further
493 increased. The head groups of the lipid molecules are brought closer
494 by stronger interactions between them. For a flat surface, a large
495 amount of free volume between the head groups is available, but when
496 the head groups are brought closer, the tails will splay outward,
497 forming an inverse micelle. When $\sigma_h=1.28\sigma_0$, the $P_2$
498 order parameter decreases slightly after the strength of the dipole is
499 increased to $16$ debye. For rippled surfaces, there is less free
500 volume available between the head groups. Therefore there is little
501 effect on the structure of the membrane due to increasing dipolar
502 strength. However, the increase of the $P_2$ order parameter implies
503 the membranes are flatten by the increase of the strength of the
504 dipole. Unlike other systems that melt directly when the interaction
505 is weak enough, for $\sigma_h=1.41\sigma_0$, part of the membrane
506 melts into itself first. The upper leaf of the bilayer becomes totally
507 interdigitated with the lower leaf. This is different behavior than
508 what is exhibited with the interdigitated lines in the rippled phase
509 where only one interdigitated line connects the two leaves of bilayer.
510 \begin{figure}[htb]
511 \centering
512 \includegraphics[width=\linewidth]{sP2}
513 \caption{The $P_2$ order parameter as a funtion of the strength of the
514 dipole.\label{fig:sP2}}
515 \end{figure}
516
517 Figure \ref{fig:tP2} shows the dependence of the order parameter on
518 temperature. The behavior of the $P_2$ order paramter is
519 straightforward. Systems are more ordered at low temperature, and more
520 disordered at high temperatures. When the temperature is high enough,
521 the membranes are instable. For flat surfaces ($\sigma_h=1.20\sigma_0$
522 and $\sigma_h=1.28\sigma_0$), when the temperature is increased to
523 $310$, the $P_2$ order parameter increases slightly instead of
524 decreases like ripple surface. This is an evidence of the frustration
525 of the dipolar ordering in each leaf of the lipid bilayer, at low
526 temperature, the systems are locked in a local minimum energy state,
527 with increase of the temperature, the system can jump out the local
528 energy well to find the lower energy state which is the longer range
529 orientational ordering. Like the dipolar ordering of the flat
530 surfaces, the ordering of the tails of the lipid molecules for ripple
531 membranes ($\sigma_h=1.35\sigma_0$ and $\sigma_h=1.41\sigma_0$) also
532 show some nonthermal characteristic. With increase of the temperature,
533 the $P_2$ order parameter decreases firstly, and increases afterward
534 when the temperature is greater than $290 K$. The increase of the
535 $P_2$ order parameter indicates a more ordered structure for the tails
536 of the lipid molecules which corresponds to a more flat surface. Since
537 our model lacks the detailed information on lipid tails, we can not
538 simulate the fluid phase with melted fatty acid chains. Moreover, the
539 formation of the tilted $L_{\beta'}$ phase also depends on the
540 organization of fatty groups on tails.
541 \begin{figure}[htb]
542 \centering
543 \includegraphics[width=\linewidth]{tP2}
544 \caption{The $P_2$ order parameter as a funtion of
545 temperature.\label{fig:tP2}}
546 \end{figure}
547
548 \section{Discussion}
549 \label{sec:discussion}
550
551 \bibliography{mdripple}
552 \end{document}