4 |
|
#include <iostream> |
5 |
|
|
6 |
|
#include "MoleculeStamp.hpp" |
7 |
– |
#include "simError.h" |
7 |
|
|
8 |
+ |
char MoleculeStamp::errMsg[500]; |
9 |
+ |
|
10 |
|
MoleculeStamp::MoleculeStamp(){ |
11 |
|
|
12 |
|
n_atoms = 0; |
51 |
|
|
52 |
|
} |
53 |
|
|
54 |
< |
void MoleculeStamp::assignString( char* lhs, char* rhs ){ |
54 |
> |
char* MoleculeStamp::assignString( char* lhs, char* rhs ){ |
55 |
|
|
56 |
|
if( !strcmp( lhs, "name" ) ){ |
57 |
|
strcpy( name, rhs ); |
62 |
|
else unhandled->add( lhs, rhs ); |
63 |
|
have_extras = 1; |
64 |
|
} |
65 |
+ |
return NULL; |
66 |
|
} |
67 |
|
|
68 |
< |
void MoleculeStamp::assignDouble( char* lhs, double rhs ){ |
68 |
> |
char* MoleculeStamp::assignDouble( char* lhs, double rhs ){ |
69 |
|
int i; |
70 |
|
|
71 |
|
if( !strcmp( lhs, "nAtoms" ) ){ |
72 |
|
n_atoms = (int)rhs; |
73 |
|
|
74 |
|
if( have_atoms ){ |
75 |
< |
sprintf( painCave.errMsg, |
75 |
> |
sprintf( errMsg, |
76 |
|
"MoleculeStamp error, n_atoms already declared" |
77 |
|
"for molecule: %s\n", |
78 |
|
name); |
79 |
< |
painCave.isFatal = 1; |
78 |
< |
simError(); |
79 |
> |
return strdup( errMsg ); |
80 |
|
} |
81 |
|
have_atoms = 1; |
82 |
|
atoms = new AtomStamp*[n_atoms]; |
87 |
|
n_bonds = (int)rhs; |
88 |
|
|
89 |
|
if( have_bonds ){ |
90 |
< |
sprintf( painCave.errMsg, |
90 |
> |
sprintf( errMsg, |
91 |
|
"MoleculeStamp error, n_bonds already declared for" |
92 |
|
" molecule: %s\n", |
93 |
|
name); |
94 |
< |
painCave.isFatal = 1; |
94 |
< |
simError(); |
94 |
> |
return strdup( errMsg ); |
95 |
|
} |
96 |
|
have_bonds = 1; |
97 |
|
bonds = new BondStamp*[n_bonds]; |
102 |
|
n_bends = (int)rhs; |
103 |
|
|
104 |
|
if( have_bends ){ |
105 |
< |
sprintf( painCave.errMsg, |
105 |
> |
sprintf( errMsg, |
106 |
|
"MoleculeStamp error, n_bends already declared for" |
107 |
|
" molecule: %s\n", |
108 |
|
name); |
109 |
< |
painCave.isFatal = 1; |
110 |
< |
simError(); |
109 |
> |
return strdup( errMsg ); |
110 |
|
} |
111 |
|
have_bends = 1; |
112 |
|
bends = new BendStamp*[n_bends]; |
117 |
|
n_torsions = (int)rhs; |
118 |
|
|
119 |
|
if( have_torsions ){ |
120 |
< |
sprintf( painCave.errMsg, |
120 |
> |
sprintf( errMsg, |
121 |
|
"MoleculeStamp error, n_torsions already declared for" |
122 |
|
" molecule: %s\n", |
123 |
|
name ); |
124 |
< |
painCave.isFatal = 1; |
126 |
< |
simError(); |
124 |
> |
return strdup( errMsg ); |
125 |
|
} |
126 |
|
have_torsions = 1; |
127 |
|
torsions = new TorsionStamp*[n_torsions]; |
132 |
|
else unhandled->add( lhs, rhs ); |
133 |
|
have_extras = 1; |
134 |
|
} |
135 |
+ |
return NULL; |
136 |
|
} |
137 |
|
|
138 |
< |
void MoleculeStamp::assignInt( char* lhs, int rhs ){ |
138 |
> |
char* MoleculeStamp::assignInt( char* lhs, int rhs ){ |
139 |
|
int i; |
140 |
|
|
141 |
|
if( !strcmp( lhs, "nAtoms" ) ){ |
142 |
|
n_atoms = rhs; |
143 |
|
|
144 |
|
if( have_atoms ){ |
145 |
< |
sprintf( painCave.errMsg, |
145 |
> |
sprintf( errMsg, |
146 |
|
"MoleculeStamp error, n_atoms already declared for" |
147 |
|
" molecule: %s\n", |
148 |
|
name); |
149 |
< |
painCave.isFatal = 1; |
151 |
< |
simError(); |
149 |
> |
return strdup( errMsg ); |
150 |
|
} |
151 |
|
have_atoms = 1; |
152 |
|
atoms = new AtomStamp*[n_atoms]; |
157 |
|
n_bonds = rhs; |
158 |
|
|
159 |
|
if( have_bonds ){ |
160 |
< |
sprintf( painCave.errMsg, |
160 |
> |
sprintf( errMsg, |
161 |
|
"MoleculeStamp error, n_bonds already declared for" |
162 |
|
" molecule: %s\n", |
163 |
|
name); |
164 |
< |
painCave.isFatal = 1; |
167 |
< |
simError(); |
164 |
> |
return strdup( errMsg ); |
165 |
|
} |
166 |
|
have_bonds = 1; |
167 |
|
bonds = new BondStamp*[n_bonds]; |
172 |
|
n_bends = rhs; |
173 |
|
|
174 |
|
if( have_bends ){ |
175 |
< |
sprintf( painCave.errMsg, |
175 |
> |
sprintf( errMsg, |
176 |
|
"MoleculeStamp error, n_bends already declared for" |
177 |
|
" molecule: %s\n", |
178 |
|
name ); |
179 |
< |
painCave.isFatal = 1; |
183 |
< |
simError(); |
179 |
> |
return strdup( errMsg ); |
180 |
|
} |
181 |
|
have_bends = 1; |
182 |
|
bends = new BendStamp*[n_bends]; |
187 |
|
n_torsions = rhs; |
188 |
|
|
189 |
|
if( have_torsions ){ |
190 |
< |
sprintf( painCave.errMsg, |
190 |
> |
sprintf( errMsg, |
191 |
|
"MoleculeStamp error, n_torsions already declared for" |
192 |
|
" molecule: %s\n", |
193 |
|
name); |
194 |
< |
painCave.isFatal = 1; |
199 |
< |
simError(); |
194 |
> |
return strdup( errMsg ); |
195 |
|
} |
196 |
|
have_torsions = 1; |
197 |
|
torsions = new TorsionStamp*[n_torsions]; |
202 |
|
else unhandled->add( lhs, rhs ); |
203 |
|
have_extras = 1; |
204 |
|
} |
205 |
+ |
return NULL; |
206 |
|
} |
207 |
|
|
208 |
|
char* MoleculeStamp::addAtom( AtomStamp* the_atom, int atomIndex ){ |
209 |
|
|
214 |
– |
char err[200]; |
215 |
– |
|
210 |
|
if( have_atoms && atomIndex < n_atoms ) atoms[atomIndex] = the_atom; |
211 |
|
else{ |
212 |
|
if( have_atoms ){ |
213 |
< |
sprintf( err, "MoleculeStamp error, %d out of nAtoms range", |
213 |
> |
sprintf( errMsg, "MoleculeStamp error, %d out of nAtoms range", |
214 |
|
atomIndex ); |
215 |
< |
return strdup( err ); |
215 |
> |
return strdup( errMsg ); |
216 |
|
} |
217 |
|
else return strdup("MoleculeStamp error, nAtoms not given before" |
218 |
|
"first atom declaration." ); |
223 |
|
|
224 |
|
char* MoleculeStamp::addBond( BondStamp* the_bond, int bondIndex ){ |
225 |
|
|
232 |
– |
char err[200]; |
226 |
|
|
227 |
|
if( have_bonds && bondIndex < n_bonds ) bonds[bondIndex] = the_bond; |
228 |
|
else{ |
229 |
|
if( have_bonds ){ |
230 |
< |
sprintf( err, "MoleculeStamp error, %d out of nBonds range", |
230 |
> |
sprintf( errMsg, "MoleculeStamp error, %d out of nBonds range", |
231 |
|
bondIndex ); |
232 |
< |
return strdup( err ); |
232 |
> |
return strdup( errMsg ); |
233 |
|
} |
234 |
|
else return strdup("MoleculeStamp error, nBonds not given before" |
235 |
|
"first bond declaration." ); |
240 |
|
|
241 |
|
char* MoleculeStamp::addBend( BendStamp* the_bend, int bendIndex ){ |
242 |
|
|
250 |
– |
char err[200]; |
243 |
|
|
244 |
|
if( have_bends && bendIndex < n_bends ) bends[bendIndex] = the_bend; |
245 |
|
else{ |
246 |
|
if( have_bends ){ |
247 |
< |
sprintf( err, "MoleculeStamp error, %d out of nBends range", |
247 |
> |
sprintf( errMsg, "MoleculeStamp error, %d out of nBends range", |
248 |
|
bendIndex ); |
249 |
< |
return strdup( err ); |
249 |
> |
return strdup( errMsg ); |
250 |
|
} |
251 |
|
else return strdup("MoleculeStamp error, nBends not given before" |
252 |
|
"first bend declaration." ); |
257 |
|
|
258 |
|
char* MoleculeStamp::addTorsion( TorsionStamp* the_torsion, int torsionIndex ){ |
259 |
|
|
268 |
– |
char err[200]; |
260 |
|
|
261 |
|
if( have_torsions && torsionIndex < n_torsions ) |
262 |
|
torsions[torsionIndex] = the_torsion; |
263 |
|
else{ |
264 |
|
if( have_torsions ){ |
265 |
< |
sprintf( err, "MoleculeStamp error, %d out of nTorsions range", |
265 |
> |
sprintf( errMsg, "MoleculeStamp error, %d out of nTorsions range", |
266 |
|
torsionIndex ); |
267 |
< |
return strdup( err ); |
267 |
> |
return strdup( errMsg ); |
268 |
|
} |
269 |
|
else return strdup("MoleculeStamp error, nTorsions not given before" |
270 |
|
"first torsion declaration." ); |
277 |
|
|
278 |
|
int i; |
279 |
|
short int no_atom; |
289 |
– |
char err[120]; |
280 |
|
|
281 |
|
if( !have_name || !have_atoms ){ |
282 |
|
if( !have_name ) return strdup( "MoleculeStamp error. Molecule's name" |
290 |
|
} |
291 |
|
|
292 |
|
if( no_atom ){ |
293 |
< |
sprintf( err, |
293 |
> |
sprintf( errMsg, |
294 |
|
"MoleculeStamp error. Not all of the atoms were" |
295 |
|
" declared in molecule \"%s\".\n", name ); |
296 |
< |
return strdup( err ); |
296 |
> |
return strdup( errMsg ); |
297 |
|
} |
298 |
|
|
299 |
|
return NULL; |