# | Line 189 | Line 189 | void SimSetup::createSim( void ){ | |
---|---|---|
189 | if( currentStamp == NULL ){ | |
190 | sprintf( painCave.errMsg, | |
191 | "SimSetup error: Component \"%s\" was not found in the " | |
192 | < | "list of declared molecules\n" |
192 | > | "list of declared molecules\n", |
193 | id ); | |
194 | painCave.isFatal = 1; | |
195 | simError(); | |
# | Line 567 | Line 567 | void SimSetup::createSim( void ){ | |
567 | ||
568 | // new AllLong( simnfo ); | |
569 | ||
570 | < | if( !strcmp( force_field, "TraPPE" ) ) new Verlet( *simnfo ); |
570 | > | if( !strcmp( force_field, "TraPPE" ) ) new Verlet( *simnfo, the_ff ); |
571 | if( !strcmp( force_field, "DipoleTest" ) ) new Symplectic( simnfo ); | |
572 | if( !strcmp( force_field, "TraPPE_Ex" ) ) new Symplectic( simnfo ); | |
573 | if( !strcmp( force_field, "LJ" ) ) new Verlet( *simnfo, the_ff ); | |
# | Line 657 | Line 657 | void SimSetup::makeBonds( void ){ | |
657 | the_bonds = new bond_pair[tot_bonds]; | |
658 | index = 0; | |
659 | offset = 0; | |
660 | < | molIndex = 0;g1 |
660 | > | molIndex = 0; |
661 | ||
662 | for( i=0; i<n_components; i++ ){ | |
663 |
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