--- trunk/mdtools/interface_implementation/SimSetup.cpp	2002/10/17 21:59:12	144
+++ trunk/mdtools/interface_implementation/SimSetup.cpp	2002/10/18 15:34:21	145
@@ -156,6 +156,7 @@ void SimSetup::createSim( void ){
   // create the atom and short range interaction arrays
 
   the_atoms = new Atom*[tot_atoms];
+  Atom::createArrays(tot_atoms);
   the_molecules = new Molecule[tot_nmol];
 
 
@@ -392,7 +393,7 @@ void SimSetup::makeAtoms( void ){
 	current_atom = comp_stamps[i]->getAtom( k );
 	if( current_atom->haveOrientation() ){
 
-	  dAtom = new DirectionalAtom;
+	  dAtom = new DirectionalAtom(index);
 	  simnfo->n_oriented++;
 	  the_atoms[index] = dAtom;
 
@@ -412,7 +413,7 @@ void SimSetup::makeAtoms( void ){
 	  dAtom->setSUz( uz );
 	}
 	else{
-	  the_atoms[index] = new GeneralAtom;
+	  the_atoms[index] = new GeneralAtom(index);
 	}
 	the_atoms[index]->setType( current_atom->getType() );
 	the_atoms[index]->setIndex( index );