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chuckv |
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module long_range_forces |
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use definitions, ONLY : dp, ndim |
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use simulation |
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implicit none |
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real(kind = dp ) :: rlistsq |
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real(kind = dp ) :: rcutsq |
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chuckv |
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integer, allocatable, dimension(:) :: point |
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integer, allocatable, dimension(:) :: list |
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chuckv |
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chuckv |
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contains |
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chuckv |
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chuckv |
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subroutine long_range_force ( check_exclude, & |
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pair_i, pair_j, n_pairs, natoms, sigma, epslon, & |
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box, & |
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rx, ry, rz, fx, fy, fz, & |
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v, & |
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update, point, list, maxnab, & |
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rx0, ry0, rz0, & |
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ux, uy, uz, & |
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tx, ty, tz, & |
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ex, ey, ez, & |
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mu, rrf, rtaper, & |
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dielectric, & |
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is_dipole, is_vdw, is_lj, is_ssd, & |
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Axx, Axy, Axz, & |
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Ayx, Ayy, Ayz, & |
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Azx, Azy, Azz ) |
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chuckv |
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chuckv |
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implicit none |
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! This routine implements the Verlet neighbor list for all of |
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! the long range force calculations. After a pair has been |
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! determined to lie within the neighbor list, the pair is passed |
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! to the appropriate force functions. |
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! Passed Arguments |
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integer :: n_pairs ! the number of excluded pairs |
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integer :: natoms ! the number of atoms in the system |
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integer :: maxnab ! the max number of neighbors for the verlet list |
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logical(kind=2) :: check_exclude ! boolean to check for exclusion pairs |
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logical(kind=2) :: update ! boolean to update the neighbor list |
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double precision rcut ! the VDW/LJ cutoff radius |
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double precision rlist ! Verlet list cutoff |
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double precision box_x, box_y, box_z ! periodic boundry conditions |
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double precision rrf ! dipole reaction field cutoff |
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double precision rtaper ! the taper radius of the rxn field |
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double precision dielectric ! the dielectric cnst. of the rxn field |
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double precision v ! the potential energy |
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! Passed Arrays |
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integer, dimension(n_pairs):: pair_i, pair_j ! the excluded pairs i and j |
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integer, dimension(natoms) :: point ! the Verlet list ptr array |
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integer, dimension(maxnab) :: list ! the verlet list |
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chuckv |
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chuckv |
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logical(kind=2), dimension(natoms) :: is_dipole ! dipole boolean array |
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logical(kind=2), dimension(natoms) :: is_vdw ! VDW boolean array |
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logical(kind=2), dimension(natoms) :: is_lj ! LJ boolean array |
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logical(kind=2), dimension(natoms) :: is_ssd ! ssd boolean array |
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chuckv |
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chuckv |
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double precision, dimension(natoms) :: sigma ! VDW/LJ distance prmtr. |
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double precision, dimension(natoms) :: epslon ! VDW/LJ well depth prmtr. |
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double precision, dimension(natoms) :: rx, ry, rz ! positions |
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double precision, dimension(natoms) :: fx, fy, fz ! forces |
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double precision, dimension(natoms) :: rx0, ry0, rz0 ! intial verlet positions |
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double precision, dimension(natoms) :: ux, uy, uz ! dipole unit vectors |
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double precision, dimension(natoms) :: tx, ty, tz ! torsions |
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double precision, dimension(natoms) :: ex, ey, ez ! reacion field |
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double precision, dimension(natoms) :: mu ! dipole moments |
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double precision, dimension(natoms) :: Axx, Axy, Axz ! rotational array |
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double precision, dimension(natoms) :: Ayx, Ayy, Ayz ! |
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double precision, dimension(natoms) :: Azx, Azy, Azz ! |
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chuckv |
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chuckv |
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! local variables |
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chuckv |
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chuckv |
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double precision rxi, ryi, rzi |
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double precision rcutsq, rlstsq, rrfsq, rijsq, rij |
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double precision rxij, ryij, rzij |
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double precision prerf ! a reaction field preterm |
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chuckv |
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chuckv |
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double precision, dimension(9,natoms) :: A |
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chuckv |
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chuckv |
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integer :: i, j, k, ix, jx, nlist |
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integer :: jbeg, jend, jnab |
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chuckv |
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chuckv |
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logical :: exclude_temp1, exclude_temp2, exclude |
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chuckv |
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chuckv |
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!******************************************************************* |
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chuckv |
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chuckv |
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do i=1, natoms |
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A(1,i) = Axx(i) |
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A(2,i) = Axy(i) |
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A(3,i) = Axz(i) |
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A(4,i) = Ayx(i) |
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A(5,i) = Ayy(i) |
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A(6,i) = Ayz(i) |
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A(7,i) = Azx(i) |
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A(8,i) = Azy(i) |
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A(9,i) = Azz(i) |
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end do |
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chuckv |
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chuckv |
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rlstsq = rlist * rlist |
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rcutsq = rcut * rcut |
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rrfsq = rrf * rrf |
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chuckv |
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chuckv |
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prerf = 14.39257d0 * 2.0d0 * ( dielectric - 1.0d0 ) / & |
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( ( 2.0d0 * dielectric + 1.0d0 ) * rrfsq * rrf ) |
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chuckv |
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chuckv |
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! ** zero forces ** |
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chuckv |
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chuckv |
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do I = 1, natoms |
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chuckv |
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chuckv |
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fx(i) = 0.0d0 |
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fy(i) = 0.0d0 |
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fz(i) = 0.0d0 |
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chuckv |
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chuckv |
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tx(i) = 0.0d0 |
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ty(i) = 0.0d0 |
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tz(i) = 0.0d0 |
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chuckv |
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chuckv |
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ex(i) = 0.0d0 |
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ey(i) = 0.0d0 |
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ez(i) = 0.0d0 |
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chuckv |
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chuckv |
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end do |
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chuckv |
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chuckv |
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V = 0.0d0 |
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chuckv |
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chuckv |
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if ( update ) then |
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chuckv |
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chuckv |
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! ** save current configuration, construct ** |
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! ** neighbour list and calculate forces ** |
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chuckv |
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chuckv |
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call long_range_save(natoms,rx,ry,rz,rx0,ry0,rz0) |
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chuckv |
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chuckv |
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nlist = 0 |
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do i = 1, natoms - 1 |
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point(i) = nlist + 1 |
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rxi = rx(i) |
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ryi = ry(i) |
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rzi = rz(i) |
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do j = i + 1, natoms |
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rxij = rx(j) - rxi |
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ryij = ry(j) - ryi |
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rzij = rz(j) - rzi |
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exclude = .false. |
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if( check_exclude ) then |
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do k = 1, n_pairs |
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! add 1 for c -> fortran indexing |
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ix = pair_i(k) + 1 |
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jx = pair_j(k) + 1 |
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exclude_temp1 = (i.eq.ix).and.(j.eq.jx) |
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exclude_temp2 = (i.eq.jx).and.(j.eq.ix) |
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if(exclude_temp1.or.exclude_temp2) then |
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exclude = .true. |
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endif |
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enddo |
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endif |
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if(.not.exclude) then |
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rxij = rxij - box_x * dsign( 1.0d0, rxij ) & |
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* int( (dabs( rxij / box_x ) + 0.5d0) ) |
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ryij = ryij - box_y * dsign( 1.0d0, ryij ) & |
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* int( (dabs( ryij / box_y ) + 0.5d0) ) |
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rzij = rzij - box_z * dsign( 1.0d0, rzij ) & |
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* int( (dabs( rzij / box_z ) + 0.5d0) ) |
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rijsq = rxij * rxij + ryij * ryij + rzij * rzij |
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if ( rijsq .lt. rlstsq ) then |
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nlist = nlist + 1 |
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list(nlist) = j |
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! ** remove this check if maxnab is appropriate ** |
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if ( nlist .eq. maxnab ) then |
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write(*,*) i, j, nlist, maxnab, rijsq, rlstsq |
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stop 'list too small' |
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endif |
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if ( rijsq .lt. rcutsq ) then |
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if ( is_vdw(i) .and. is_vdw(j) ) then |
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call force_VDW( i, j, rcutsq, rijsq, sigma, epslon, & |
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v, fx, fy, fz, rxij, ryij, rzij, natoms ) |
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endif |
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if ( is_lj(i) .and. is_lj(j) ) then |
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call force_lj( i, j, rcutsq, rijsq, sigma, epslon, v, & |
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fx, fy, fz, rxij, ryij, rzij, natoms ) |
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endif |
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if( is_ssd(i) .and. is_ssd(j) ) then |
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rij = dsqrt(rijsq); |
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call ssd_forces( natoms, i, j, i, j, rxij, ryij, rzij, & |
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rij, v, rijsq, fx, fy, fz, tx, ty, tz, A ) |
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end if |
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endif |
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if( is_dipole(i) .and. is_dipole(j) ) then |
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if( rijsq .lt. rrfsq ) then |
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call dipole_rf( i, j, rrfsq, rijsq, v, rxij, ryij, & |
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rzij, rrf, dielectric, rtaper, natoms, & |
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ux, uy, uz, mu, fx, fy, fz, tx, ty, tz, & |
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ex, ey, ez, prerf ) |
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endif |
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end if |
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endif |
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endif |
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enddo |
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end do |
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point(natoms) = nlist + 1 |
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else |
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!** use the list to find the neighbours ** |
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do i = 1, natoms - 1 |
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jbeg = point(i) |
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jend = point(i+1) - 1 |
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!** check that atom i has neighbours ** |
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if( jbeg .le. jend ) then |
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rxi = rx(i) |
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ryi = ry(i) |
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rzi = rz(i) |
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do jnab = jbeg, jend |
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j = list(jnab) |
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rxij = rx(j) - rxi |
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ryij = ry(j) - ryi |
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rzij = rz(j) - rzi |
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rxij = rxij - box_x * dsign( 1.0d0, rxij ) & |
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* int( dabs( rxij / box_x ) + 0.5d0 ) |
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ryij = ryij - box_y * dsign( 1.0d0, ryij ) & |
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* int( dabs( ryij / box_y ) + 0.5d0 ) |
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rzij = rzij - box_z * dsign( 1.0d0, rzij ) & |
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* int( dabs( rzij / box_z ) + 0.5d0 ) |
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rijsq = rxij * rxij + ryij * ryij + rzij * rzij |
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if ( rijsq .lt. rcutsq ) then |
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if ( is_vdw(i) .and. is_vdw(j) ) then |
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call force_VDW( i, j, rcutsq, rijsq, sigma, epslon, & |
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v, fx, fy, fz, rxij, ryij, rzij, natoms ) |
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endif |
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if ( is_lj(i) .and. is_lj(j) ) then |
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call force_lj( i, j, rcutsq, rijsq, sigma, epslon, v, & |
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fx, fy, fz, rxij, ryij, rzij, natoms ) |
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endif |
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if( is_ssd(i) .and. is_ssd(j) ) then |
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rij = dsqrt(rijsq); |
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call ssd_forces( natoms, i, j, i, j, rxij, ryij, rzij, & |
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rij, v, rijsq, fx, fy, fz, tx, ty, tz, A ) |
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end if |
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endif |
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if( is_dipole(i) .and. is_dipole(j) ) then |
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if( rijsq .lt. rrfsq ) then |
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call dipole_rf( i, j, rrfsq, rijsq, v, rxij, ryij, & |
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rzij, rrf, dielectric, rtaper, natoms, & |
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ux, uy, uz, mu, fx, fy, fz, tx, ty, tz, & |
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ex, ey, ez, prerf ) |
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endif |
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endif |
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end do |
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endif |
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end do |
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endif |
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! calculate the reaction field effect |
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chuckv |
167 |
!!$ call reaction_field( v, prerf, natoms, mu, ux, uy, uz, tx, ty, tz, & |
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!!$ ex, ey, ez, is_dipole ) |
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chuckv |
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end subroutine long_range_force |
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chuckv |
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chuckv |
185 |
subroutine long_range_check ( rcut, rlist, update, natoms, & |
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rx,ry,rz,rx0,ry0,rz0) |
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chuckv |
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chuckv |
185 |
!******************************************************************* |
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!** decides whether the list needs to be reconstructed. ** |
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!** ** |
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!** principal variables: ** |
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!** ** |
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!** real rx(n),ry(n),rz(n) atom positions ** |
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!** real rx0(n),ry0(n),rz0(n) coordinates at last update ** |
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!** real rlist radius of verlet list ** |
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!** real rcut cutoff distance for forces ** |
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!** real dispmx largest displacement ** |
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!** integer n number of atoms ** |
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!** logical update if true the list is updated ** |
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!** ** |
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!** usage: ** |
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!** ** |
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!** check is called to set update before every call to force. ** |
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!******************************************************************* |
364 |
chuckv |
167 |
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366 |
chuckv |
185 |
! Passed variables |
367 |
chuckv |
167 |
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chuckv |
185 |
integer :: natoms |
369 |
chuckv |
167 |
|
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chuckv |
185 |
logical(kind=2) :: update |
371 |
chuckv |
167 |
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chuckv |
185 |
double precision rcut, rlist |
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chuckv |
167 |
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chuckv |
185 |
! Passed arrays |
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double precision, dimension(natoms) :: rx, ry, rz |
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double precision, dimension(natoms) :: rx0, ry0, rz0 |
377 |
chuckv |
167 |
|
378 |
chuckv |
185 |
! local variables |
379 |
chuckv |
167 |
|
380 |
chuckv |
185 |
double precision dispmx |
381 |
chuckv |
167 |
|
382 |
chuckv |
185 |
integer :: i |
383 |
chuckv |
167 |
|
384 |
chuckv |
185 |
!******************************************************************* |
385 |
chuckv |
167 |
|
386 |
chuckv |
185 |
!** calculate maximum displacement since last update ** |
387 |
chuckv |
167 |
|
388 |
chuckv |
185 |
dispmx = 0.0d0 |
389 |
chuckv |
167 |
|
390 |
chuckv |
185 |
do i = 1, natoms |
391 |
|
|
|
392 |
|
|
!write(*,*) 'calling displacement', i |
393 |
|
|
|
394 |
|
|
dispmx = max ( dabs ( rx(i) - rx0(i) ), dispmx ) |
395 |
|
|
dispmx = max ( dabs ( ry(i) - ry0(i) ), dispmx ) |
396 |
|
|
dispmx = max ( dabs ( rz(i) - rz0(i) ), dispmx ) |
397 |
|
|
|
398 |
|
|
!write(*,*) 'called displacement', i |
399 |
|
|
|
400 |
|
|
end do |
401 |
|
|
|
402 |
|
|
!** a conservative test of the list skin crossing ** |
403 |
|
|
|
404 |
|
|
dispmx = 2.0d0 * dsqrt ( 3.0d0 * dispmx ** 2 ) |
405 |
|
|
|
406 |
|
|
update = ( dispmx .gt. ( rlist - rcut ) ) |
407 |
|
|
|
408 |
|
|
|
409 |
|
|
return |
410 |
|
|
end subroutine long_range_check |
411 |
|
|
|
412 |
|
|
|
413 |
|
|
|
414 |
|
|
subroutine long_range_save(natoms,rx,ry,rz,rx0,ry0,rz0) |
415 |
|
|
|
416 |
|
|
|
417 |
|
|
!******************************************************************* |
418 |
|
|
!** saves current configuration for future checking. ** |
419 |
|
|
!** ** |
420 |
|
|
!** principal variables: ** |
421 |
|
|
!** ** |
422 |
|
|
!** real rx(n),ry(n),rz(n) atom positions ** |
423 |
|
|
!** real rx0(n),ry0(n),rz0(n) storage locations for save ** |
424 |
|
|
!** integer n number of atoms ** |
425 |
|
|
!** ** |
426 |
|
|
!** usage: ** |
427 |
|
|
!** ** |
428 |
|
|
!** save is called whenever the new verlet list is constructed. ** |
429 |
|
|
!******************************************************************* |
430 |
|
|
|
431 |
|
|
integer :: i |
432 |
|
|
|
433 |
|
|
integer :: natoms |
434 |
|
|
|
435 |
|
|
double precision, dimension(natoms) :: rx, ry, rz |
436 |
|
|
double precision, dimension(natoms) :: rx0, ry0, rz0 |
437 |
|
|
|
438 |
|
|
!******************************************************************* |
439 |
|
|
|
440 |
|
|
do i = 1, natoms |
441 |
|
|
|
442 |
|
|
rx0(i) = rx(i) |
443 |
|
|
ry0(i) = ry(i) |
444 |
|
|
rz0(i) = rz(i) |
445 |
|
|
|
446 |
|
|
end do |
447 |
|
|
|
448 |
|
|
return |
449 |
|
|
end subroutine long_range_save |
450 |
|
|
|
451 |
chuckv |
167 |
end module long_range_forces |