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1 %% This BibTeX bibliography file was created using BibDesk.
2 %% http://bibdesk.sourceforge.net/
3
4
5 %% Created for Dan Gezelter at 2016-05-11 11:37:48 -0400
6
7
8 %% Saved with string encoding Unicode (UTF-8)
9
10
11 @string{cpl = {Chem. Phys. Lett.}}
12
13 @string{jcp = {J. Chem. Phys.}}
14
15 @string{jctc = {J. Chem. Theory Comput.}}
16
17 @string{jpcb = {J. Phys. Chem. B}}
18
19 @string{jpcc = {J. Phys. Chem. C}}
20
21 @string{mp = {Mol. Phys.}}
22
23
24 @article{Stenqvist:2015ph,
25 Author = {Stenqvist, Bj{\"o}rn and Trulsson, Martin and Abrikosov, Alexei I. and Lund, Mikael},
26 Date-Added = {2016-04-14 18:22:12 +0000},
27 Date-Modified = {2016-05-11 15:37:40 +0000},
28 Journal = {J. Chem. Phys.},
29 Number = {1},
30 Title = {Direct summation of dipole-dipole interactions using the Wolf formalism},
31 Url = {http://scitation.aip.org/content/aip/journal/jcp/143/1/10.1063/1.4923001},
32 Volume = {143},
33 Year = {2015},
34 Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/143/1/10.1063/1.4923001},
35 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.4923001}}
36
37 @book{Raab:2004ve,
38 Author = {Raab, R.E. and de Lange, O.L.},
39 Date-Added = {2016-04-12 14:09:31 +0000},
40 Date-Modified = {2016-04-12 17:44:01 +0000},
41 Isbn = {9780198567271},
42 Lccn = {2005297163},
43 Publisher = {OUP Oxford},
44 Series = {International Series of Monographs on Physics},
45 Title = {Multipole Theory in Electromagnetism: Classical, quantum, and symmetry aspects, with applications},
46 Url = {https://books.google.com/books?id=V4lO6gBY6SgC},
47 Year = {2004},
48 Bdsk-Url-1 = {https://books.google.com/books?id=V4lO6gBY6SgC}}
49
50 @book{Stone:1997ly,
51 Author = {Stone, A.J.},
52 Date-Added = {2016-04-10 13:53:00 +0000},
53 Date-Modified = {2016-04-10 13:53:00 +0000},
54 Isbn = {9780198558835},
55 Lccn = {96008025},
56 Publisher = {Clarendon Press},
57 Series = {International Series of Monographs on Chemistry},
58 Title = {The Theory of Intermolecular Forces},
59 Url = {https://books.google.com/books?id=nQvhXDVnmowC},
60 Year = {1997},
61 Bdsk-Url-1 = {https://books.google.com/books?id=nQvhXDVnmowC}}
62
63 @book{Morse:1946zr,
64 Author = {Morse, P.M.C. and Feshbach, H.},
65 Date-Added = {2016-04-10 13:46:34 +0000},
66 Date-Modified = {2016-04-12 17:45:34 +0000},
67 Publisher = {Technology Press},
68 Title = {{Methods of Theoretical Physics}},
69 Url = {https://books.google.com/books?id=CSxWAAAAMAAJ},
70 Year = {1946},
71 Bdsk-Url-1 = {https://books.google.com/books?id=CSxWAAAAMAAJ}}
72
73 @book{Morse:1953ys,
74 Author = {Morse, P.M.C. and Feshbach, H.},
75 Date-Added = {2016-04-10 13:45:24 +0000},
76 Date-Modified = {2016-04-10 13:45:24 +0000},
77 Lccn = {52011515},
78 Number = {v. 2},
79 Publisher = {McGraw-Hill},
80 Series = {International series in pure and applied physics},
81 Title = {Methods of theoretical physics},
82 Url = {https://books.google.com/books?id=DvZQAAAAMAAJ},
83 Year = {1953},
84 Bdsk-Url-1 = {https://books.google.com/books?id=DvZQAAAAMAAJ}}
85
86 @article{Wu:2005nr,
87 Author = {Wu, Xiongwu and Brooks, Bernard R.},
88 Date-Added = {2016-03-28 18:06:59 +0000},
89 Date-Modified = {2016-04-08 17:40:06 +0000},
90 Eid = 044107,
91 Journal = {J. Chem. Phys.},
92 Number = {4},
93 Title = {Isotropic periodic sum: A method for the calculation of long-range interactions},
94 Url = {http://scitation.aip.org/content/aip/journal/jcp/122/4/10.1063/1.1836733},
95 Volume = {122},
96 Year = {2005},
97 Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/122/4/10.1063/1.1836733},
98 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.1836733}}
99
100 @article{Wang:2016kx,
101 Author = {Wang, Han and Nakamura, Haruki and Fukuda, Ikuo},
102 Date-Added = {2016-03-28 18:03:52 +0000},
103 Date-Modified = {2016-04-08 17:40:30 +0000},
104 Eid = 114503,
105 Journal = {J. Chem. Phys.},
106 Number = {11},
107 Title = {A critical appraisal of the zero-multipole method: Structural, thermodynamic, dielectric, and dynamical properties of a water system},
108 Url = {http://scitation.aip.org/content/aip/journal/jcp/144/11/10.1063/1.4943956},
109 Volume = {144},
110 Year = {2016},
111 Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/144/11/10.1063/1.4943956},
112 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.4943956}}
113
114 @article{Fukuda:2013uq,
115 Author = {Fukuda, Ikuo},
116 Date-Added = {2016-03-28 18:03:23 +0000},
117 Date-Modified = {2016-04-08 17:40:21 +0000},
118 Eid = 174107,
119 Journal = {J. Chem. Phys.},
120 Number = {17},
121 Title = {Zero-multipole summation method for efficiently estimating electrostatic interactions in molecular system},
122 Url = {http://scitation.aip.org/content/aip/journal/jcp/139/17/10.1063/1.4827055},
123 Volume = {139},
124 Year = {2013},
125 Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/139/17/10.1063/1.4827055},
126 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.4827055}}
127
128 @article{Meineke05,
129 Author = {M.~A. Meineke and C.~F. {Vardeman II} and T. Lin and C.~J. Fennell and J.~D. Gezelter},
130 Date-Added = {2016-03-28 15:39:34 +0000},
131 Date-Modified = {2016-03-28 15:39:34 +0000},
132 Journal = {J. Comp. Chem.},
133 Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/MyPapers/Meineke_OOPSE_05.pdf},
134 Pages = {252-271},
135 Title = {OOPSE: An Open Source Object-Oriented Parallel Simulation Engine for Molecular Dynamics},
136 Volume = 26,
137 Year = 2005}
138
139 @book{openmd,
140 Author = {J. Daniel Gezelter and Madan Lamichhane and Joseph Michalka and Patrick Louden and Kelsey M. Stocker and Shenyu Kuang and James Marr and Chunlei Li and Charles F. Vardeman and Teng Lin and Christopher J. Fennell and Xiuquan Sun and Kyle Daily and Yang Zheng and Matthew A. Meineke},
141 Date-Added = {2016-03-28 15:39:28 +0000},
142 Date-Modified = {2016-04-08 20:52:20 +0000},
143 Publisher = {An open source molecular dynamics engine},
144 Title = {OpenMD},
145 Url = {http://openmd.org (accessed 4/8/2016)},
146 Year = {version 2.4, {\tt http://openmd.org} (accessed 4/8/2016)},
147 Bdsk-Url-1 = {http://openmd.org%20(accessed%2011/13/2013)}}
148
149 @article{Smith82,
150 Author = {W. Smith},
151 Date-Added = {2016-03-28 15:39:22 +0000},
152 Date-Modified = {2016-04-08 17:47:57 +0000},
153 Journal = {CCP5 Information Quarterly},
154 Pages = {13-25},
155 Title = {Point multipoles in the \uppercase{E}wald summation},
156 Volume = 4,
157 Year = 1982}
158
159 @article{Smith98,
160 Author = {W. Smith},
161 Date-Added = {2016-03-28 15:39:22 +0000},
162 Date-Modified = {2016-03-28 15:39:22 +0000},
163 Journal = {CCP5 Information Quarterly},
164 Pages = {18-30},
165 Title = {Point multipoles in the \uppercase{E}wald summation (Revisited)},
166 Volume = {46},
167 Year = {1998}}
168
169 @article{Fixman:1974fk,
170 Abstract = {A classical system of mass points subject to holonomic constraints has a kinetic energy dependent on the coordinates as well as the moments of the remaining degrees of freedom. Coordinate averages formed in the reduced space of unconstrained coordinates and their conjugate momenta then involve a metric determinant that may be difficult to evaluate. A theorem is derived that permits a relatively easy evaluation when the constraints are distances between particles, and an application is made to a Kramers type freely jointed chain.},
171 Author = {Fixman, Marshall},
172 Date-Added = {2016-03-28 14:03:50 +0000},
173 Date-Modified = {2016-04-08 17:47:34 +0000},
174 Journal = {Proc. Natl. Acad. Sci. USA},
175 Number = {8},
176 Pages = {3050-3053},
177 Title = {Classical Statistical Mechanics of Constraints: A Theorem and Application to Polymers},
178 Url = {http://www.pnas.org/content/71/8/3050.abstract},
179 Volume = {71},
180 Year = {1974},
181 Bdsk-Url-1 = {http://www.pnas.org/content/71/8/3050.abstract}}
182
183 @article{Wolf99,
184 Author = {D. Wolf and P. Keblinski and S.~R. Phillpot and J. Eggebrecht},
185 Date-Added = {2013-07-10 15:17:24 +0000},
186 Date-Modified = {2013-07-10 15:17:24 +0000},
187 Journal = {J. Chem. Phys.},
188 Number = {17},
189 Pages = {8254-8282},
190 Rating = {0},
191 Read = {No},
192 Title = {Exact method for the simulation of Coulombic systems by spherically truncated, pairwise $r^{-1}$ summation},
193 Volume = {110},
194 Year = {1999}}
195
196 @article{Zahn02,
197 Author = {D. Zahn and B. Schilling and S.~M. Kast},
198 Date-Added = {2013-07-10 15:17:24 +0000},
199 Date-Modified = {2013-07-10 15:17:24 +0000},
200 Journal = {J. Phys. Chem. B},
201 Number = {41},
202 Pages = {10725-10732},
203 Title = {Enhancement of the \uppercase{W}olf Damped Coulomb Potential: $\mbox{S}$tatic, Dynamic, and Dielectric Properties of Liquid Water from Molecular Simulation},
204 Volume = {106},
205 Year = {2002}}
206
207 @article{Kast03,
208 Author = {S.~M. Kast and K.~F. Schmidt and B. Schilling},
209 Date-Added = {2013-12-06 16:42:41 +0000},
210 Date-Modified = {2013-12-06 16:42:41 +0000},
211 Journal = Cpl,
212 Pages = {398-404},
213 Title = {Integral Equation Theory for Correcting Truncation Errors in Molecular Simulations},
214 Volume = {367},
215 Year = {2003}}
216
217 @article{Beckd05,
218 Affiliation = {Biomolecular Structure and Design Program, University of Washington, Seattle, Washington 98195-7610, And Department of Medicinal Chemistry, University of Washington, Seattle, Washington 98195-7610},
219 Author = {Beck, D.A.C. And Armen, R.S. And Daggett, V.},
220 Date-Added = {2013-12-06 16:42:41 +0000},
221 Date-Modified = {2013-12-06 16:42:41 +0000},
222 Issn = {0006-2960},
223 Journal = {Biochemistry},
224 Number = {2},
225 Pages = {609-616},
226 Title = {Cutoff Size Need Not Strongly Influence Molecular Dynamics Results for Solvated Polypeptides},
227 Url = {Http://Pubs3.Acs.Org/Acs/Journals/Doilookup?In_Doi=10.1021/Bi0486381},
228 Volume = {44},
229 Year = {2005},
230 Bdsk-Url-1 = {Http://Pubs3.Acs.Org/Acs/Journals/Doilookup?In_Doi=10.1021/Bi0486381}}
231
232 @article{Ma05,
233 Author = {Y. Ma and S.~H. Garofalini},
234 Date-Added = {2013-07-10 15:17:24 +0000},
235 Date-Modified = {2013-07-10 15:17:24 +0000},
236 Journal = {Mol. Simul.},
237 Number = 11,
238 Pages = {739-748},
239 Title = {Modified Wolf electrostatic summation: Incorporating an empirical charge overlap},
240 Volume = 31,
241 Year = 2005}
242
243 @article{Fennell06,
244 Author = {C.~J. Fennell and J.~D. Gezelter},
245 Date-Added = {2013-07-10 15:17:31 +0000},
246 Date-Modified = {2013-07-10 15:17:31 +0000},
247 Doi = {10.1063/1.2206581},
248 Journal = {J. Chem. Phys.},
249 Number = {23},
250 Pages = {234104(12)},
251 Rating = {5},
252 Read = {Yes},
253 Title = {Is the \uppercase{E}wald summation still necessary? \uppercase{P}airwise alternatives to the accepted standard for long-range electrostatics},
254 Volume = {124},
255 Year = {2006},
256 Bdsk-Url-1 = {http://dx.doi.org/10.1063/1.2206581}}
257
258 @article{PaperII,
259 Author = {Lamichhane, Madan and Newman, Kathie E. and Gezelter, J. Daniel},
260 Date-Modified = {2016-04-08 17:41:15 +0000},
261 Doi = {http://dx.doi.org/10.1063/1.4896628},
262 Eid = 134110,
263 Journal = {J. Chem. Phys.},
264 Number = {13},
265 Pages = {-},
266 Title = {Real space electrostatics for multipoles. II. Comparisons with the Ewald sum},
267 Url = {http://scitation.aip.org/content/aip/journal/jcp/141/13/10.1063/1.4896628},
268 Volume = {141},
269 Year = {2014},
270 Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/141/13/10.1063/1.4896628},
271 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.4896628}}
272
273 @article{PaperI,
274 Author = {Lamichhane, Madan and Gezelter, J. Daniel and Newman, Kathie E.},
275 Date-Modified = {2016-04-08 17:41:10 +0000},
276 Doi = {http://dx.doi.org/10.1063/1.4896627},
277 Eid = 134109,
278 Journal = {J. Chem. Phys.},
279 Number = {13},
280 Pages = {-},
281 Title = {Real space electrostatics for multipoles. I. Development of methods},
282 Url = {http://scitation.aip.org/content/aip/journal/jcp/141/13/10.1063/1.4896627},
283 Volume = {141},
284 Year = {2014},
285 Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/141/13/10.1063/1.4896627},
286 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.4896627}}
287
288 @article{Kirkwood39,
289 Author = {Kirkwood, John G.},
290 Date-Modified = {2016-04-08 17:41:45 +0000},
291 Doi = {http://dx.doi.org/10.1063/1.1750343},
292 Journal = {J. Chem. Phys.},
293 Number = {10},
294 Pages = {911-919},
295 Title = {The Dielectric Polarization of Polar Liquids},
296 Url = {http://scitation.aip.org/content/aip/journal/jcp/7/10/10.1063/1.1750343},
297 Volume = {7},
298 Year = {1939},
299 Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/7/10/10.1063/1.1750343},
300 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.1750343}}
301
302 @article{Onsagar36,
303 Author = {Lars Onsager},
304 Date-Modified = {2016-04-08 17:42:10 +0000},
305 Doi = {10.1021/ja01299a050},
306 Journal = {J. Am. Chem. Soc.},
307 Number = {8},
308 Pages = {1486-1493},
309 Title = {Electric Moments of Molecules in Liquids},
310 Volume = {58},
311 Year = {1936},
312 Bdsk-Url-1 = {http://dx.doi.org/10.1021/ja01299a050}}
313
314 @book{Allen89,
315 Abstract = {{Computer simulation is an essential tool in studying the chemistry and physics of liquids. Simulations allow us to develop models and to test them against experimental data. They can be used to evaluate approximate theories of liquids, and to provide detailed information on the structure and dynamics of model liquids at the molecular level. This book is an introduction and practical guide to the molecular dynamics and Monte Carlo methods. The first four chapters describe these methods in detail, and provide the essential background in intermolecular forces and statistical mechanics. Chapters 5 and 6 emphasize the practical aspects of writing efficient programs and analysing the simulation results. The remaining chapters cover advanced techniques, non-equilibrium methods, Brownian dynamics, quantum simulations, and some important applications. FORTRAN code is presented in the text.}},
316 Author = {Allen, M. P. and Tildesley, D. J.},
317 Citeulike-Article-Id = {1820925},
318 Citeulike-Linkout-0 = {http://www.amazon.ca/exec/obidos/redirect?tag=citeulike09-20\&path=ASIN/0198556454},
319 Citeulike-Linkout-1 = {http://www.amazon.de/exec/obidos/redirect?tag=citeulike01-21\&path=ASIN/0198556454},
320 Citeulike-Linkout-10 = {http://www.worldcat.org/oclc/20281700},
321 Citeulike-Linkout-2 = {http://www.amazon.fr/exec/obidos/redirect?tag=citeulike06-21\&path=ASIN/0198556454},
322 Citeulike-Linkout-3 = {http://www.amazon.jp/exec/obidos/ASIN/0198556454},
323 Citeulike-Linkout-4 = {http://www.amazon.co.uk/exec/obidos/ASIN/0198556454/citeulike00-21},
324 Citeulike-Linkout-5 = {http://www.amazon.com/exec/obidos/redirect?tag=citeulike07-20\&path=ASIN/0198556454},
325 Citeulike-Linkout-6 = {http://www.worldcat.org/isbn/0198556454},
326 Citeulike-Linkout-7 = {http://books.google.com/books?vid=ISBN0198556454},
327 Citeulike-Linkout-8 = {http://www.amazon.com/gp/search?keywords=0198556454\&index=books\&linkCode=qs},
328 Citeulike-Linkout-9 = {http://www.librarything.com/isbn/0198556454},
329 Date-Added = {2014-07-17 17:43:42 +0000},
330 Date-Modified = {2014-07-17 17:43:42 +0000},
331 Day = {29},
332 Edition = {Reprint},
333 Howpublished = {Paperback},
334 Isbn = {0198556454},
335 Keywords = {computer\_simulation\_of\_liquids, dynamics, liquids, molecular, simulations},
336 Month = jun,
337 Posted-At = {2009-09-21 01:53:35},
338 Priority = {2},
339 Publisher = {Oxford University Press, USA},
340 Series = {Oxford science publications},
341 Title = {{Computer Simulation of Liquids}},
342 Url = {http://www.amazon.com/exec/obidos/redirect?tag=citeulike07-20\&path=ASIN/0198556454},
343 Year = {1989},
344 Bdsk-Url-1 = {http://www.amazon.com/exec/obidos/redirect?tag=citeulike07-20%5C&path=ASIN/0198556454}}
345
346 @article{NeumannI83,
347 Author = {Neumann, Martin},
348 Date-Added = {2014-07-17 16:58:07 +0000},
349 Date-Modified = {2016-04-08 17:44:03 +0000},
350 Doi = {10.1080/00268978300102721},
351 Journal = {Mol. Phys.},
352 Number = {4},
353 Pages = {841-858},
354 Title = {Dipole moment fluctuation formulas in computer simulations of polar systems},
355 Volume = {50},
356 Year = {1983},
357 Bdsk-Url-1 = {http://www.tandfonline.com/doi/abs/10.1080/00268978300102721},
358 Bdsk-Url-2 = {http://dx.doi.org/10.1080/00268978300102721}}
359
360 @article{NeumannII83,
361 Author = {M. Neumann and O. Steinhauser},
362 Date-Added = {2014-07-17 16:52:21 +0000},
363 Date-Modified = {2016-04-08 17:44:14 +0000},
364 Doi = {http://dx.doi.org/10.1016/0009-2614(83)80585-5},
365 Issn = {0009-2614},
366 Journal = {Chem. Phys. Lett.},
367 Number = {4--5},
368 Pages = {417 - 422},
369 Title = {On the calculation of the dielectric constant using the Ewald-Kornfeld tensor},
370 Volume = {95},
371 Year = {1983},
372 Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/pii/0009261483805855},
373 Bdsk-Url-2 = {http://dx.doi.org/10.1016/0009-2614(83)80585-5}}
374
375 @article{Neumann84,
376 Author = {M. Neumann and O. Steinhauser and G.~S. Pawley},
377 Date-Added = {2014-09-11 17:58:01 +0000},
378 Date-Modified = {2014-09-11 17:58:01 +0000},
379 Journal = mp,
380 Number = {1},
381 Pages = {97-113},
382 Title = {Consistent calculation of the static and frequency-dependent dielectric constant in computer simulations},
383 Volume = {52},
384 Year = {1984}}
385
386 @article{Neumann85,
387 Author = {M. Neumann},
388 Date-Added = {2014-09-11 17:58:01 +0000},
389 Date-Modified = {2014-09-11 17:58:01 +0000},
390 Journal = jcp,
391 Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/DielectricConst./Neumann_H2ODielConst_85.pdf},
392 Number = {12},
393 Pages = {5663-5672},
394 Title = {The dielectric constant of water. \uppercase{C}omputer simulations with the \uppercase{MCY} potential},
395 Volume = {82},
396 Year = {1985}}
397
398 @article{Horn04,
399 Author = {H.~W. Horn and W.~C. Swope and J.~W. Pitera and J.~D. Madura and T.~J. Dick and G.~L. Hura and T. Head-Gordon},
400 Date-Added = {2014-09-11 17:58:10 +0000},
401 Date-Modified = {2014-09-11 17:58:10 +0000},
402 Doi = {10.1063/1.1683075},
403 Journal = jcp,
404 Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Research/Water_Models/Horn_TIP4P-Ew_04.pdf},
405 Number = {20},
406 Pages = {9665-9678},
407 Title = {Development of an improved four-site water model for biomolecular simulations: \uppercase{TIP4P-E}w},
408 Volume = {120},
409 Year = {2004},
410 Bdsk-Url-1 = {http://dx.doi.org/10.1063/1.1683075}}
411
412 @article{LoganI81,
413 Author = {David E. Logan},
414 Date-Modified = {2016-04-08 17:46:28 +0000},
415 Doi = {10.1080/00268978100103181},
416 Journal = {Mol. Phys.},
417 Number = {6},
418 Pages = {1271-1295},
419 Title = {On the dielectric theory of fluids},
420 Volume = {44},
421 Year = {1981},
422 Bdsk-Url-1 = {http://dx.doi.org/10.1080/00268978100103181}}
423
424 @article{LoganII82,
425 Author = {David E. Logan},
426 Date-Modified = {2016-04-08 17:46:41 +0000},
427 Doi = {10.1080/00268978200101251},
428 Journal = {Mol. Phys.},
429 Number = {2},
430 Pages = {271-285},
431 Title = {On the dielectric theory of fluids},
432 Volume = {46},
433 Year = {1982},
434 Bdsk-Url-1 = {http://dx.doi.org/10.1080/00268978200101251}}
435
436 @article{LoganIII82,
437 Author = {David E. Logan},
438 Date-Modified = {2016-04-08 17:46:52 +0000},
439 Doi = {10.1080/00268978200101871},
440 Journal = {Mol. Phys.},
441 Number = {6},
442 Pages = {1155-1194},
443 Title = {On the dielectric theory of fluids},
444 Volume = {46},
445 Year = {1982},
446 Bdsk-Url-1 = {http://dx.doi.org/10.1080/00268978200101871}}
447
448 @article{Izvekov08,
449 Author = {Izvekov, Sergei and Swanson, Jessica M. J. and Voth, Gregory A.},
450 Date = {APR 17 2008},
451 Date-Added = {2013-12-06 16:42:41 +0000},
452 Date-Modified = {2013-12-06 16:42:41 +0000},
453 Doi = {DOI 10.1021/jp710339n},
454 Journal = jpcb,
455 Pages = {4711-4724},
456 Publisher = {AMER CHEMICAL SOC},
457 Timescited = {0},
458 Title = {Coarse-graining in interaction space: A systematic approach for replacing long-range electrostatics with short-range Potentials},
459 Volume = {112},
460 Year = {2008},
461 Bdsk-Url-1 = {http://dx.doi.org/10.1021/jp710339n}}
462
463 @article{Ernst92,
464 Author = {Ernst, Richard M. and Wu, Lei and Liu, Chu-heng and Nagel, Sidney R. and Neubert, Mary E.},
465 Doi = {10.1103/PhysRevB.45.667},
466 Issue = {2},
467 Journal = {Phys. Rev. B},
468 Month = {Jan},
469 Numpages = {0},
470 Pages = {667--672},
471 Publisher = {American Physical Society},
472 Title = {Quadrupolar susceptibility of complex fluids},
473 Url = {http://link.aps.org/doi/10.1103/PhysRevB.45.667},
474 Volume = {45},
475 Year = {1992},
476 Bdsk-Url-1 = {http://link.aps.org/doi/10.1103/PhysRevB.45.667},
477 Bdsk-Url-2 = {http://dx.doi.org/10.1103/PhysRevB.45.667}}
478
479 @article{JeonI03,
480 Author = {Jeon, Jonggu and Kim, Hyung J.},
481 Date-Modified = {2016-04-08 17:44:56 +0000},
482 Doi = {http://dx.doi.org/10.1063/1.1605376},
483 Journal = {J. Chem. Phys.},
484 Number = {16},
485 Pages = {8606-8625},
486 Title = {A continuum theory of solvation in quadrupolar solvents. I. Formulation},
487 Url = {http://scitation.aip.org/content/aip/journal/jcp/119/16/10.1063/1.1605376},
488 Volume = {119},
489 Year = {2003},
490 Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/119/16/10.1063/1.1605376},
491 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.1605376}}
492
493 @article{JeonII03,
494 Author = {Jeon, Jonggu and Kim, Hyung J.},
495 Date-Modified = {2016-04-08 17:45:04 +0000},
496 Doi = {http://dx.doi.org/10.1063/1.1605377},
497 Journal = {J. Chem. Phys.},
498 Number = {16},
499 Pages = {8626-8635},
500 Title = {A continuum theory of solvation in quadrupolar solvents. II. Solvation free energetics, dynamics, and solvatochromism},
501 Url = {http://scitation.aip.org/content/aip/journal/jcp/119/16/10.1063/1.1605377},
502 Volume = {119},
503 Year = {2003},
504 Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/119/16/10.1063/1.1605377},
505 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.1605377}}
506
507 @article{Chitanvis96,
508 Author = {Chitanvis, Shirish M.},
509 Date-Modified = {2016-04-08 17:42:33 +0000},
510 Doi = {http://dx.doi.org/10.1063/1.471615},
511 Journal = {J. Chem. Phys.},
512 Number = {22},
513 Pages = {9065-9074},
514 Title = {A continuum solvation theory of quadrupolar fluids},
515 Url = {http://scitation.aip.org/content/aip/journal/jcp/104/22/10.1063/1.471615},
516 Volume = {104},
517 Year = {1996},
518 Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/104/22/10.1063/1.471615},
519 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.471615}}
520
521 @book{Jackson98,
522 Abstract = {{A revision of the defining book covering the physics and classical mathematics necessary to understand electromagnetic fields in materials and at surfaces and interfaces. The third edition has been revised to address the changes in emphasis and applications that have occurred in the past twenty years. }},
523 Author = {Jackson, John D.},
524 Citeulike-Article-Id = {486037},
525 Citeulike-Linkout-0 = {http://www.amazon.ca/exec/obidos/redirect?tag=citeulike09-20\&path=ASIN/047130932X},
526 Citeulike-Linkout-1 = {http://www.amazon.de/exec/obidos/redirect?tag=citeulike01-21\&path=ASIN/047130932X},
527 Citeulike-Linkout-2 = {http://www.amazon.fr/exec/obidos/redirect?tag=citeulike06-21\&path=ASIN/047130932X},
528 Citeulike-Linkout-3 = {http://www.amazon.jp/exec/obidos/ASIN/047130932X},
529 Citeulike-Linkout-4 = {http://www.amazon.co.uk/exec/obidos/ASIN/047130932X/citeulike00-21},
530 Citeulike-Linkout-5 = {http://www.amazon.com/exec/obidos/redirect?tag=citeulike07-20\&path=ASIN/047130932X},
531 Citeulike-Linkout-6 = {http://www.worldcat.org/isbn/047130932X},
532 Citeulike-Linkout-7 = {http://books.google.com/books?vid=ISBN047130932X},
533 Citeulike-Linkout-8 = {http://www.amazon.com/gp/search?keywords=047130932X\&index=books\&linkCode=qs},
534 Citeulike-Linkout-9 = {http://www.librarything.com/isbn/047130932X},
535 Date-Modified = {2016-04-12 17:45:05 +0000},
536 Day = {10},
537 Edition = {Third},
538 Howpublished = {Hardcover},
539 Isbn = {047130932X},
540 Keywords = {general},
541 Month = aug,
542 Posted-At = {2009-06-17 19:29:28},
543 Priority = {2},
544 Publisher = {Wiley},
545 Title = {{Classical Electrodynamics}},
546 Url = {http://www.amazon.com/exec/obidos/redirect?tag=citeulike07-20\&path=ASIN/047130932X},
547 Year = {1998},
548 Bdsk-Url-1 = {http://www.amazon.com/exec/obidos/redirect?tag=citeulike07-20%5C&path=ASIN/047130932X}}
549
550 @article{AduGyamfi78,
551 Author = {D. Adu-Gyamfi},
552 Date-Modified = {2016-04-08 17:48:43 +0000},
553 Doi = {http://dx.doi.org/10.1016/0378-4371(78)90175-9},
554 Issn = {0378-4371},
555 Journal = {Physica A},
556 Number = {3},
557 Pages = {553 - 558},
558 Title = {On the electric quadrupole density of an isotropic non-polar fluid},
559 Url = {http://www.sciencedirect.com/science/article/pii/0378437178901759},
560 Volume = {93},
561 Year = {1978},
562 Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/pii/0378437178901759},
563 Bdsk-Url-2 = {http://dx.doi.org/10.1016/0378-4371(78)90175-9}}
564
565 @article{AduGyamfi81,
566 Abstract = {We calculate the orientational average of the total electric dipole and quadrupole moments of a polar molecule in a non-uniform electric field and comment on the results. },
567 Author = {D. Adu-Gyamfi},
568 Date-Modified = {2016-04-08 17:48:52 +0000},
569 Doi = {http://dx.doi.org/10.1016/0378-4371(81)90174-6},
570 Issn = {0378-4371},
571 Journal = {Physica A},
572 Number = {1},
573 Pages = {205 - 210},
574 Title = {On the average moments of a polar molecule in a non-uniform electric field},
575 Url = {http://www.sciencedirect.com/science/article/pii/0378437181901746},
576 Volume = {108},
577 Year = {1981},
578 Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/pii/0378437181901746},
579 Bdsk-Url-2 = {http://dx.doi.org/10.1016/0378-4371(81)90174-6}}
580
581 @article{SalvchovI14,
582 Author = {Slavchov, Radomir I. and Ivanov, Tzanko I.},
583 Date-Modified = {2016-04-08 17:43:21 +0000},
584 Doi = {http://dx.doi.org/10.1063/1.4865878},
585 Eid = 074503,
586 Journal = {J. Chem. Phys.},
587 Number = {7},
588 Pages = {-},
589 Title = {Quadrupole terms in the Maxwell equations: Born energy, partial molar volume, and entropy of ions},
590 Url = {http://scitation.aip.org/content/aip/journal/jcp/140/7/10.1063/1.4865878},
591 Volume = {140},
592 Year = {2014},
593 Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/140/7/10.1063/1.4865878},
594 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.4865878}}
595
596 @article{SalvchovII14,
597 Author = {Slavchov, Radomir I.},
598 Date-Modified = {2016-04-08 17:43:27 +0000},
599 Doi = {http://dx.doi.org/10.1063/1.4871661},
600 Eid = 164510,
601 Journal = {J. Chem. Phys.},
602 Number = {16},
603 Pages = {-},
604 Title = {Quadrupole terms in the Maxwell equations: Debye-H{\"u}ckel theory in quadrupolarizable solvent and self-salting-out of electrolytes},
605 Url = {http://scitation.aip.org/content/aip/journal/jcp/140/16/10.1063/1.4871661},
606 Volume = {140},
607 Year = {2014},
608 Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/140/16/10.1063/1.4871661},
609 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.4871661}}
610
611 @article{Stern03,
612 Author = {Stern, Harry A. and Feller, Scott E.},
613 Date-Modified = {2016-04-08 17:43:01 +0000},
614 Doi = {http://dx.doi.org/10.1063/1.1537244},
615 Journal = {J. Chem. Phys.},
616 Number = {7},
617 Pages = {3401-3412},
618 Title = {Calculation of the dielectric permittivity profile for a nonuniform system: Application to a lipid bilayer simulation},
619 Url = {http://scitation.aip.org/content/aip/journal/jcp/118/7/10.1063/1.1537244},
620 Volume = {118},
621 Year = {2003},
622 Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/118/7/10.1063/1.1537244},
623 Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.1537244}}
624
625 @article{Wilfred07,
626 Author = {Trzesniak, Daniel and Kunz, Anna-Pitschna E. and van Gunsteren, Wilfred F.},
627 Doi = {10.1002/cphc.200600527},
628 Issn = {1439-7641},
629 Journal = {ChemPhysChem},
630 Keywords = {computer chemistry, free-energy calculations, molecular dynamics, potential of mean force},
631 Number = {1},
632 Pages = {162--169},
633 Publisher = {WILEY-VCH Verlag},
634 Title = {A Comparison of Methods to Compute the Potential of Mean Force},
635 Url = {http://dx.doi.org/10.1002/cphc.200600527},
636 Volume = {8},
637 Year = {2007},
638 Bdsk-Url-1 = {http://dx.doi.org/10.1002/cphc.200600527}}
639
640 @misc{openmd2.3,
641 Author = {J. Daniel Gezelter and Madan Lamichhane and Patrick Louden and Joseph Michalka and Suzanne Niedhart and Teng Lin and Charles F. Vardeman II and Christopher J. Fennell and Matthew A. Meineke and Shenyu Kuang and Kelsey Stocker and James Marr and Xiuquan Sun and Chunlei Li and Kyle Daily and Yang Zheng},
642 Date-Modified = {2016-04-08 20:52:27 +0000},
643 Howpublished = {Available at {\tt http://openmd.org}},
644 Title = {OPENMD-2.4: Molecular Dynamics in the Open}}
645
646 @article{Torres-del-Castillo:2006uo,
647 Author = {Torres del Castillo, G. F. and M\'{e}ndez Garrido, A.},
648 Date-Added = {2014-09-04 21:29:51 +0000},
649 Date-Modified = {2014-09-04 21:29:51 +0000},
650 Journal = {Revista Mexicana de F\'{i}sica},
651 Number = {6},
652 Pages = {501-506},
653 Title = {Torques on Quadrupoles},
654 Volume = {52},
655 Year = {2006}}
656
657 @article{Adams81,
658 Author = {Adams, D.J. and Adams, E.M.},
659 Date-Added = {2014-07-17 16:54:22 +0000},
660 Date-Modified = {2016-04-08 17:45:52 +0000},
661 Doi = {10.1080/00268978100100701},
662 Journal = {Mol. Phys.},
663 Number = {4},
664 Pages = {907-926},
665 Title = {Static dielectric properties of the Stockmayer fluid from computer simulation},
666 Volume = {42},
667 Year = {1981},
668 Bdsk-Url-1 = {http://www.tandfonline.com/doi/abs/10.1080/00268978100100701},
669 Bdsk-Url-2 = {http://dx.doi.org/10.1080/00268978100100701}}
670
671 @article{Adams80,
672 Author = {Adams, D.J.},
673 Date-Added = {2014-07-17 16:53:50 +0000},
674 Date-Modified = {2016-04-08 17:45:46 +0000},
675 Doi = {10.1080/00268978000102261},
676 Journal = {Mol. Phys.},
677 Number = {5},
678 Pages = {1261-1271},
679 Title = {Computer simulation of highly polar liquids: The hard sphere plus point dipole potential},
680 Volume = {40},
681 Year = {1980},
682 Bdsk-Url-1 = {http://www.tandfonline.com/doi/abs/10.1080/00268978000102261},
683 Bdsk-Url-2 = {http://dx.doi.org/10.1080/00268978000102261}}
684
685 @book{Arfkan,
686 Abstract = {{This best-selling title provides in one handy volume the essential mathematical tools and techniques used to solve problems in physics. It is a vital addition to the bookshelf of any serious student of physics or research professional in the field. The authors have put considerable effort into revamping this new edition.<br><br>* Updates the leading graduate-level text in mathematical physics<br>* Provides comprehensive coverage of the mathematics necessary for advanced study in physics and engineering<br>* Focuses on problem-solving skills and offers a vast array of exercises <br>* Clearly illustrates and proves mathematical relations<br><br><B>New in the Sixth Edition:</B><br>* Updated content throughout, based on users' feedback <br>* More advanced sections, including differential forms and the elegant forms of Maxwell's equations<br>* A new chapter on probability and statistics<br>* More elementary sections have been deleted}},
687 Author = {Arfken, George B. and Weber, Hans J. and Harris, Frank E.},
688 Citeulike-Article-Id = {1816367},
689 Citeulike-Linkout-0 = {http://www.amazon.ca/exec/obidos/redirect?tag=citeulike09-20\&amp;path=ASIN/0120598760},
690 Citeulike-Linkout-1 = {http://www.amazon.de/exec/obidos/redirect?tag=citeulike01-21\&amp;path=ASIN/0120598760},
691 Citeulike-Linkout-2 = {http://www.amazon.fr/exec/obidos/redirect?tag=citeulike06-21\&amp;path=ASIN/0120598760},
692 Citeulike-Linkout-3 = {http://www.amazon.jp/exec/obidos/ASIN/0120598760},
693 Citeulike-Linkout-4 = {http://www.amazon.co.uk/exec/obidos/ASIN/0120598760/citeulike00-21},
694 Citeulike-Linkout-5 = {http://www.amazon.com/exec/obidos/redirect?tag=citeulike07-20\&path=ASIN/0120598760},
695 Citeulike-Linkout-6 = {http://www.worldcat.org/isbn/0120598760},
696 Citeulike-Linkout-7 = {http://books.google.com/books?vid=ISBN0120598760},
697 Citeulike-Linkout-8 = {http://www.amazon.com/gp/search?keywords=0120598760\&index=books\&linkCode=qs},
698 Citeulike-Linkout-9 = {http://www.librarything.com/isbn/0120598760},
699 Date-Modified = {2016-04-12 17:49:09 +0000},
700 Day = {05},
701 Edition = {6},
702 Howpublished = {Hardcover},
703 Isbn = {0120598760},
704 Keywords = {mathematical-physics},
705 Month = jul,
706 Posted-At = {2009-05-18 14:56:01},
707 Priority = {2},
708 Publisher = {Academic Press},
709 Title = {{Mathematical Methods for Physicists}},
710 Url = {http://www.amazon.com/exec/obidos/redirect?tag=citeulike07-20\&path=ASIN/0120598760},
711 Year = {2005},
712 Bdsk-Url-1 = {http://www.amazon.com/exec/obidos/redirect?tag=citeulike07-20%5C&path=ASIN/0120598760}}
713
714 @article{Adams76,
715 Author = {D. J. Adams and I. R. McDonald},
716 Date-Modified = {2016-04-08 17:48:22 +0000},
717 Doi = {10.1080/00268977600102351},
718 Journal = {Mol. Phys.},
719 Number = {4},
720 Pages = {931-947},
721 Title = {Thermodynamic and dielectric properties of polar lattices},
722 Url = {http://dx.doi.org/10.1080/00268977600102351},
723 Volume = {32},
724 Year = {1976},
725 Bdsk-Url-1 = {http://dx.doi.org/10.1080/00268977600102351}}