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45 gezelter 4167
46 mlamichh 4114 \begin{document}
47    
48 gezelter 4175 %\preprint{AIP/123-QED}
49 mlamichh 4114
50 gezelter 4198 \title{Real space electrostatics for multipoles. II. Comparisons with
51     the Ewald Sum}
52 mlamichh 4114
53     \author{Madan Lamichhane}
54 gezelter 4186 \affiliation{Department of Physics, University of Notre Dame, Notre Dame, IN 46556}
55 mlamichh 4114
56     \author{Kathie E. Newman}
57 gezelter 4186 \affiliation{Department of Physics, University of Notre Dame, Notre Dame, IN 46556}
58 mlamichh 4114
59     \author{J. Daniel Gezelter}%
60     \email{gezelter@nd.edu.}
61 gezelter 4186 \affiliation{Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556
62     }
63 mlamichh 4114
64 gezelter 4186 \date{\today}
65 mlamichh 4114
66     \begin{abstract}
67 gezelter 4187 We report on tests of the shifted potential (SP), gradient shifted
68     force (GSF), and Taylor shifted force (TSF) real-space methods for
69     multipole interactions developed in the first paper in this series,
70     using the multipolar Ewald sum as a reference method. The tests were
71     carried out in a variety of condensed-phase environments designed to
72     test up to quadrupole-quadrupole interactions. Comparisons of the
73     energy differences between configurations, molecular forces, and
74     torques were used to analyze how well the real-space models perform
75     relative to the more computationally expensive Ewald treatment. We
76 gezelter 4208 have also investigated the energy conservation, structural, and
77     dynamical properties of the new methods in molecular dynamics
78     simulations. The SP method shows excellent agreement with
79     configurational energy differences, forces, and torques, and would
80     be suitable for use in Monte Carlo calculations. Of the two new
81     shifted-force methods, the GSF approach shows the best agreement
82     with Ewald-derived energies, forces, and torques and also exhibits
83     energy conservation properties that make it an excellent choice for
84     efficient computation of electrostatic interactions in molecular
85     dynamics simulations. Both SP and GSF are able to reproduce
86     structural and dyanamical properties in the liquid models with
87     excellent fidelity.
88 mlamichh 4114 \end{abstract}
89    
90 gezelter 4175 %\pacs{Valid PACS appear here}% PACS, the Physics and Astronomy
91 mlamichh 4114 % Classification Scheme.
92 gezelter 4184 %\keywords{Electrostatics, Multipoles, Real-space}
93 gezelter 4167
94 mlamichh 4114 \maketitle
95    
96 mlamichh 4166 \section{\label{sec:intro}Introduction}
97 gezelter 4167 Computing the interactions between electrostatic sites is one of the
98 gezelter 4185 most expensive aspects of molecular simulations. There have been
99     significant efforts to develop practical, efficient and convergent
100     methods for handling these interactions. Ewald's method is perhaps the
101     best known and most accurate method for evaluating energies, forces,
102     and torques in explicitly-periodic simulation cells. In this approach,
103     the conditionally convergent electrostatic energy is converted into
104     two absolutely convergent contributions, one which is carried out in
105     real space with a cutoff radius, and one in reciprocal
106 gezelter 4187 space.\cite{Ewald21,deLeeuw80,Smith81,Allen87}
107 mlamichh 4114
108 gezelter 4167 When carried out as originally formulated, the reciprocal-space
109     portion of the Ewald sum exhibits relatively poor computational
110 gezelter 4187 scaling, making it prohibitive for large systems. By utilizing a
111     particle mesh and three dimensional fast Fourier transforms (FFT), the
112     particle-mesh Ewald (PME), particle-particle particle-mesh Ewald
113 gezelter 4186 (P\textsuperscript{3}ME), and smooth particle mesh Ewald (SPME)
114     methods can decrease the computational cost from $O(N^2)$ down to $O(N
115     \log
116 gezelter 4187 N)$.\cite{Takada93,Gunsteren94,Gunsteren95,Darden:1993pd,Essmann:1995pb}
117 gezelter 4167
118 gezelter 4185 Because of the artificial periodicity required for the Ewald sum,
119 gezelter 4167 interfacial molecular systems such as membranes and liquid-vapor
120 gezelter 4187 interfaces require modifications to the method. Parry's extension of
121     the three dimensional Ewald sum is appropriate for slab
122     geometries.\cite{Parry:1975if} Modified Ewald methods that were
123     developed to handle two-dimensional (2-D) electrostatic
124 gezelter 4191 interactions.\cite{Parry:1975if,Parry:1976fq,Clarke77,Perram79,Rhee:1989kl}
125     These methods were originally quite computationally
126 gezelter 4187 expensive.\cite{Spohr97,Yeh99} There have been several successful
127 gezelter 4191 efforts that reduced the computational cost of 2-D lattice summations,
128 gezelter 4187 bringing them more in line with the scaling for the full 3-D
129 gezelter 4191 treatments.\cite{Yeh99,Kawata01,Arnold02,deJoannis02,Brodka04} The
130     inherent periodicity required by the Ewald method can also be
131     problematic in a number of protein/solvent and ionic solution
132     environments.\cite{Roberts94,Roberts95,Luty96,Hunenberger99a,Hunenberger99b,Weber00,Fennell:2006lq}
133 gezelter 4167
134 mlamichh 4166 \subsection{Real-space methods}
135 gezelter 4168 Wolf \textit{et al.}\cite{Wolf:1999dn} proposed a real space $O(N)$
136     method for calculating electrostatic interactions between point
137 gezelter 4185 charges. They argued that the effective Coulomb interaction in most
138     condensed phase systems is effectively short
139     ranged.\cite{Wolf92,Wolf95} For an ordered lattice (e.g., when
140     computing the Madelung constant of an ionic solid), the material can
141     be considered as a set of ions interacting with neutral dipolar or
142     quadrupolar ``molecules'' giving an effective distance dependence for
143     the electrostatic interactions of $r^{-5}$ (see figure
144     \ref{fig:schematic}). If one views the \ce{NaCl} crystal as a simple
145     cubic (SC) structure with an octupolar \ce{(NaCl)4} basis, the
146     electrostatic energy per ion converges more rapidly to the Madelung
147     energy than the dipolar approximation.\cite{Wolf92} To find the
148     correct Madelung constant, Lacman suggested that the NaCl structure
149     could be constructed in a way that the finite crystal terminates with
150     complete \ce{(NaCl)4} molecules.\cite{Lacman65} The central ion sees
151     what is effectively a set of octupoles at large distances. These facts
152     suggest that the Madelung constants are relatively short ranged for
153     perfect ionic crystals.\cite{Wolf:1999dn} For this reason, careful
154 gezelter 4186 application of Wolf's method can provide accurate estimates of
155 gezelter 4185 Madelung constants using relatively short cutoff radii.
156    
157     Direct truncation of interactions at a cutoff radius creates numerical
158 gezelter 4186 errors. Wolf \textit{et al.} suggest that truncation errors are due
159 gezelter 4185 to net charge remaining inside the cutoff sphere.\cite{Wolf:1999dn} To
160     neutralize this charge they proposed placing an image charge on the
161     surface of the cutoff sphere for every real charge inside the cutoff.
162     These charges are present for the evaluation of both the pair
163     interaction energy and the force, although the force expression
164 gezelter 4186 maintains a discontinuity at the cutoff sphere. In the original Wolf
165 gezelter 4185 formulation, the total energy for the charge and image were not equal
166 gezelter 4186 to the integral of the force expression, and as a result, the total
167 gezelter 4185 energy would not be conserved in molecular dynamics (MD)
168     simulations.\cite{Zahn:2002hc} Zahn \textit{et al.}, and Fennel and
169     Gezelter later proposed shifted force variants of the Wolf method with
170     commensurate force and energy expressions that do not exhibit this
171 gezelter 4186 problem.\cite{Zahn:2002hc,Fennell:2006lq} Related real-space methods
172     were also proposed by Chen \textit{et
173 gezelter 4185 al.}\cite{Chen:2004du,Chen:2006ii,Denesyuk:2008ez,Rodgers:2006nw}
174 gezelter 4186 and by Wu and Brooks.\cite{Wu:044107} Recently, Fukuda has successfuly
175     used additional neutralization of higher order moments for systems of
176     point charges.\cite{Fukuda:2013sf}
177 mlamichh 4114
178 gezelter 4181 \begin{figure}
179 gezelter 4167 \centering
180 gezelter 4190 \includegraphics[width=\linewidth]{schematic.eps}
181 gezelter 4181 \caption{Top: Ionic systems exhibit local clustering of dissimilar
182     charges (in the smaller grey circle), so interactions are
183 gezelter 4184 effectively charge-multipole at longer distances. With hard
184     cutoffs, motion of individual charges in and out of the cutoff
185     sphere can break the effective multipolar ordering. Bottom:
186     dipolar crystals and fluids have a similar effective
187 gezelter 4181 \textit{quadrupolar} ordering (in the smaller grey circles), and
188     orientational averaging helps to reduce the effective range of the
189     interactions in the fluid. Placement of reversed image multipoles
190     on the surface of the cutoff sphere recovers the effective
191 gezelter 4208 higher-order multipole behavior. \label{fig:schematic}}
192 gezelter 4167 \end{figure}
193 mlamichh 4114
194 gezelter 4185 One can make a similar effective range argument for crystals of point
195     \textit{multipoles}. The Luttinger and Tisza treatment of energy
196     constants for dipolar lattices utilizes 24 basis vectors that contain
197 gezelter 4186 dipoles at the eight corners of a unit cube.\cite{LT} Only three of
198     these basis vectors, $X_1, Y_1, \mathrm{~and~} Z_1,$ retain net dipole
199 gezelter 4185 moments, while the rest have zero net dipole and retain contributions
200 gezelter 4186 only from higher order multipoles. The lowest-energy crystalline
201 gezelter 4185 structures are built out of basis vectors that have only residual
202     quadrupolar moments (e.g. the $Z_5$ array). In these low energy
203     structures, the effective interaction between a dipole at the center
204 gezelter 4167 of a crystal and a group of eight dipoles farther away is
205     significantly shorter ranged than the $r^{-3}$ that one would expect
206     for raw dipole-dipole interactions. Only in crystals which retain a
207     bulk dipole moment (e.g. ferroelectrics) does the analogy with the
208     ionic crystal break down -- ferroelectric dipolar crystals can exist,
209     while ionic crystals with net charge in each unit cell would be
210     unstable.
211    
212     In ionic crystals, real-space truncation can break the effective
213 gezelter 4181 multipolar arrangements (see Fig. \ref{fig:schematic}), causing
214     significant swings in the electrostatic energy as individual ions move
215     back and forth across the boundary. This is why the image charges are
216 gezelter 4180 necessary for the Wolf sum to exhibit rapid convergence. Similarly,
217     the real-space truncation of point multipole interactions breaks
218     higher order multipole arrangements, and image multipoles are required
219     for real-space treatments of electrostatic energies.
220 gezelter 4167
221 gezelter 4181 The shorter effective range of electrostatic interactions is not
222     limited to perfect crystals, but can also apply in disordered fluids.
223 gezelter 4186 Even at elevated temperatures, there is local charge balance in an
224     ionic liquid, where each positive ion has surroundings dominated by
225 gezelter 4207 negative ions and vice versa. The reversed-charge images on the
226 gezelter 4186 cutoff sphere that are integral to the Wolf and DSF approaches retain
227     the effective multipolar interactions as the charges traverse the
228     cutoff boundary.
229 gezelter 4181
230     In multipolar fluids (see Fig. \ref{fig:schematic}) there is
231     significant orientational averaging that additionally reduces the
232     effect of long-range multipolar interactions. The image multipoles
233     that are introduced in the TSF, GSF, and SP methods mimic this effect
234     and reduce the effective range of the multipolar interactions as
235     interacting molecules traverse each other's cutoff boundaries.
236    
237 gezelter 4186 Forces and torques acting on atomic sites are fundamental in driving
238     dynamics in molecular simulations, and the damped shifted force (DSF)
239     energy kernel provides consistent energies and forces on charged atoms
240     within the cutoff sphere. Both the energy and the force go smoothly to
241     zero as an atom aproaches the cutoff radius. The comparisons of the
242     accuracy these quantities between the DSF kernel and SPME was
243     surprisingly good.\cite{Fennell:2006lq} As a result, the DSF method
244     has seen increasing use in molecular systems with relatively uniform
245     charge
246     densities.\cite{English08,Kannam:2012rr,Space12,Lawrence13,Acevedo13,Shi:2013ij,Vergne13}
247 gezelter 4167
248 gezelter 4168 \subsection{The damping function}
249 gezelter 4185 The damping function has been discussed in detail in the first paper
250     of this series.\cite{PaperI} The $1/r$ Coulombic kernel for the
251     interactions between point charges can be replaced by the
252     complementary error function $\mathrm{erfc}(\alpha r)/r$ to accelerate
253     convergence, where $\alpha$ is a damping parameter with units of
254     inverse distance. Altering the value of $\alpha$ is equivalent to
255     changing the width of Gaussian charge distributions that replace each
256     point charge, as Coulomb integrals with Gaussian charge distributions
257     produce complementary error functions when truncated at a finite
258     distance.
259 mlamichh 4114
260 gezelter 4185 With moderate damping coefficients, $\alpha \sim 0.2$, the DSF method
261     produced very good agreement with SPME for interaction energies,
262     forces and torques for charge-charge
263     interactions.\cite{Fennell:2006lq}
264 gezelter 4167
265 gezelter 4168 \subsection{Point multipoles in molecular modeling}
266     Coarse-graining approaches which treat entire molecular subsystems as
267     a single rigid body are now widely used. A common feature of many
268     coarse-graining approaches is simplification of the electrostatic
269     interactions between bodies so that fewer site-site interactions are
270 gezelter 4185 required to compute configurational
271     energies.\cite{Ren06,Essex10,Essex11}
272 mlamichh 4166
273 gezelter 4186 Additionally, because electrons in a molecule are not localized at
274     specific points, the assignment of partial charges to atomic centers
275     is always an approximation. For increased accuracy, atomic sites can
276     also be assigned point multipoles and polarizabilities. Recently,
277     water has been modeled with point multipoles up to octupolar order
278     using the soft sticky dipole-quadrupole-octupole (SSDQO)
279 gezelter 4180 model.\cite{Ichiye10_1,Ichiye10_2,Ichiye10_3} Atom-centered point
280 gezelter 4168 multipoles up to quadrupolar order have also been coupled with point
281     polarizabilities in the high-quality AMOEBA and iAMOEBA water
282 gezelter 4185 models.\cite{Ren:2003uq,Ren:2004kx,Ponder:2010vl,Wang:2013fk} However,
283     truncating point multipoles without smoothing the forces and torques
284 gezelter 4186 can create energy conservation issues in molecular dynamics
285     simulations.
286 mlamichh 4166
287 gezelter 4168 In this paper we test a set of real-space methods that were developed
288     for point multipolar interactions. These methods extend the damped
289     shifted force (DSF) and Wolf methods originally developed for
290     charge-charge interactions and generalize them for higher order
291 gezelter 4186 multipoles. The detailed mathematical development of these methods
292     has been presented in the first paper in this series, while this work
293     covers the testing of energies, forces, torques, and energy
294 gezelter 4168 conservation properties of the methods in realistic simulation
295     environments. In all cases, the methods are compared with the
296 gezelter 4186 reference method, a full multipolar Ewald treatment.\cite{Smith82,Smith98}
297 gezelter 4168
298    
299     \section{\label{sec:method}Review of Methods}
300     Any real-space electrostatic method that is suitable for MD
301     simulations should have the electrostatic energy, forces and torques
302     between two sites go smoothly to zero as the distance between the
303 gezelter 4208 sites, $r_{ab}$ approaches the cutoff radius, $r_c$. Requiring
304 gezelter 4168 this continuity at the cutoff is essential for energy conservation in
305     MD simulations. The mathematical details of the shifted potential
306     (SP), gradient-shifted-force (GSF) and Taylor shifted-force (TSF)
307     methods have been discussed in detail in the previous paper in this
308     series.\cite{PaperI} Here we briefly review the new methods and
309     describe their essential features.
310 mlamichh 4166
311 gezelter 4168 \subsection{Taylor-shifted force (TSF)}
312 mlamichh 4114
313 gezelter 4168 The electrostatic potential energy between point multipoles can be
314     expressed as the product of two multipole operators and a Coulombic
315     kernel,
316 mlamichh 4114 \begin{equation}
317 gezelter 4206 U_{ab}(r)= M_{a} M_{b} \frac{1}{r} \label{kernel}.
318 mlamichh 4114 \end{equation}
319 gezelter 4206 where the multipole operator for site $a$, $M_{a}$, is
320     expressed in terms of the point charge, $C_{a}$, dipole, ${\bf D}_{a}$, and quadrupole, $\mathsf{Q}_{a}$, for object
321     $a$, etc.
322 mlamichh 4166
323 gezelter 4180 The TSF potential for any multipole-multipole interaction can be
324     written
325 gezelter 4168 \begin{equation}
326     U^{\text{TSF}}= (\text{prefactor}) (\text{derivatives}) f_n(r)
327     \label{generic}
328     \end{equation}
329 gezelter 4180 where $f_n(r)$ is a shifted kernel that is appropriate for the order
330 gezelter 4181 of the interaction (see Ref. \onlinecite{PaperI}), with $n=0$ for
331     charge-charge, $n=1$ for charge-dipole, $n=2$ for charge-quadrupole
332     and dipole-dipole, $n=3$ for dipole-quadrupole, and $n=4$ for
333     quadrupole-quadrupole. To ensure smooth convergence of the energy,
334     force, and torques, a Taylor expansion with $n$ terms must be
335     performed at cutoff radius ($r_c$) to obtain $f_n(r)$.
336 gezelter 4168
337     For multipole-multipole interactions, following this procedure results
338 gezelter 4180 in separate radial functions for each of the distinct orientational
339     contributions to the potential, and ensures that the forces and
340     torques from each of these contributions will vanish at the cutoff
341     radius. For example, the direct dipole dot product
342 gezelter 4206 ($\mathbf{D}_{a}
343     \cdot \mathbf{D}_{b}$) is treated differently than the dipole-distance
344 gezelter 4168 dot products:
345     \begin{equation}
346 gezelter 4206 U_{D_{a}D_{b}}(r)= -\frac{1}{4\pi \epsilon_0} \left[ \left(
347     \mathbf{D}_{a} \cdot
348     \mathbf{D}_{b} \right) v_{21}(r) +
349     \left( \mathbf{D}_{a} \cdot \hat{\mathbf{r}} \right)
350     \left( \mathbf{D}_{b} \cdot \hat{\mathbf{r}} \right) v_{22}(r) \right]
351 gezelter 4168 \end{equation}
352    
353 gezelter 4180 For the Taylor shifted (TSF) method with the undamped kernel,
354     $v_{21}(r) = -\frac{1}{r^3} + \frac{3 r}{r_c^4} - \frac{8}{r_c^3} +
355     \frac{6}{r r_c^2}$ and $v_{22}(r) = \frac{3}{r^3} + \frac{3 r}{r_c^4}
356     - \frac{6}{r r_c^2}$. In these functions, one can easily see the
357     connection to unmodified electrostatics as well as the smooth
358     transition to zero in both these functions as $r\rightarrow r_c$. The
359     electrostatic forces and torques acting on the central multipole due
360 gezelter 4184 to another site within the cutoff sphere are derived from
361 gezelter 4168 Eq.~\ref{generic}, accounting for the appropriate number of
362     derivatives. Complete energy, force, and torque expressions are
363     presented in the first paper in this series (Reference
364 gezelter 4175 \onlinecite{PaperI}).
365 gezelter 4168
366     \subsection{Gradient-shifted force (GSF)}
367    
368 gezelter 4180 A second (and conceptually simpler) method involves shifting the
369     gradient of the raw Coulomb potential for each particular multipole
370 gezelter 4168 order. For example, the raw dipole-dipole potential energy may be
371     shifted smoothly by finding the gradient for two interacting dipoles
372     which have been projected onto the surface of the cutoff sphere
373     without changing their relative orientation,
374 gezelter 4181 \begin{equation}
375 gezelter 4206 U_{D_{a}D_{b}}(r) = U_{D_{a}D_{b}}(r) -
376     U_{D_{a}D_{b}}(r_c)
377     - (r_{ab}-r_c) ~~~\hat{\mathbf{r}}_{ab} \cdot
378     \nabla U_{D_{a}D_{b}}(r_c).
379 gezelter 4181 \end{equation}
380 gezelter 4206 Here the lab-frame orientations of the two dipoles, $\mathbf{D}_{a}$ and $\mathbf{D}_{b}$, are retained at the cutoff distance
381 gezelter 4180 (although the signs are reversed for the dipole that has been
382     projected onto the cutoff sphere). In many ways, this simpler
383     approach is closer in spirit to the original shifted force method, in
384     that it projects a neutralizing multipole (and the resulting forces
385     from this multipole) onto a cutoff sphere. The resulting functional
386     forms for the potentials, forces, and torques turn out to be quite
387     similar in form to the Taylor-shifted approach, although the radial
388     contributions are significantly less perturbed by the gradient-shifted
389     approach than they are in the Taylor-shifted method.
390 gezelter 4168
391 gezelter 4180 For the gradient shifted (GSF) method with the undamped kernel,
392 gezelter 4210 $v_{21}(r) = -\frac{1}{r^3} - \frac{3 r}{r_c^4} + \frac{4}{r_c^3}$ and
393 gezelter 4180 $v_{22}(r) = \frac{3}{r^3} + \frac{9 r}{r_c^4} - \frac{12}{r_c^3}$.
394     Again, these functions go smoothly to zero as $r\rightarrow r_c$, and
395     because the Taylor expansion retains only one term, they are
396     significantly less perturbed than the TSF functions.
397    
398 gezelter 4168 In general, the gradient shifted potential between a central multipole
399     and any multipolar site inside the cutoff radius is given by,
400     \begin{equation}
401 gezelter 4206 U^{\text{GSF}} = \sum \left[ U(\mathbf{r}, \mathsf{A}, \mathsf{B}) -
402     U(r_c \hat{\mathbf{r}},\mathsf{A}, \mathsf{B}) - (r-r_c)
403     \hat{\mathbf{r}} \cdot \nabla U(r_c \hat{\mathbf{r}},\mathsf{A}, \mathsf{B}) \right]
404 gezelter 4168 \label{generic2}
405     \end{equation}
406     where the sum describes a separate force-shifting that is applied to
407 gezelter 4184 each orientational contribution to the energy. In this expression,
408     $\hat{\mathbf{r}}$ is the unit vector connecting the two multipoles
409 gezelter 4206 ($a$ and $b$) in space, and $\mathsf{A}$ and $\mathsf{B}$
410 gezelter 4184 represent the orientations the multipoles.
411 gezelter 4168
412     The third term converges more rapidly than the first two terms as a
413     function of radius, hence the contribution of the third term is very
414     small for large cutoff radii. The force and torque derived from
415 gezelter 4184 Eq. \ref{generic2} are consistent with the energy expression and
416 gezelter 4175 approach zero as $r \rightarrow r_c$. Both the GSF and TSF methods
417 gezelter 4168 can be considered generalizations of the original DSF method for
418     higher order multipole interactions. GSF and TSF are also identical up
419     to the charge-dipole interaction but generate different expressions in
420     the energy, force and torque for higher order multipole-multipole
421     interactions. Complete energy, force, and torque expressions for the
422     GSF potential are presented in the first paper in this series
423 gezelter 4184 (Reference~\onlinecite{PaperI}).
424 gezelter 4168
425    
426 mlamichh 4166 \subsection{Shifted potential (SP) }
427 gezelter 4168 A discontinuous truncation of the electrostatic potential at the
428     cutoff sphere introduces a severe artifact (oscillation in the
429     electrostatic energy) even for molecules with the higher-order
430     multipoles.\cite{PaperI} We have also formulated an extension of the
431     Wolf approach for point multipoles by simply projecting the image
432     multipole onto the surface of the cutoff sphere, and including the
433     interactions with the central multipole and the image. This
434     effectively shifts the total potential to zero at the cutoff radius,
435 mlamichh 4166 \begin{equation}
436 gezelter 4206 U^{\text{SP}} = \sum \left[ U(\mathbf{r}, \mathsf{A}, \mathsf{B}) -
437     U(r_c \hat{\mathbf{r}},\mathsf{A}, \mathsf{B}) \right]
438 mlamichh 4166 \label{eq:SP}
439     \end{equation}
440 gezelter 4168 where the sum describes separate potential shifting that is done for
441     each orientational contribution to the energy (e.g. the direct dipole
442     product contribution is shifted {\it separately} from the
443     dipole-distance terms in dipole-dipole interactions). Note that this
444 gezelter 4175 is not a simple shifting of the total potential at $r_c$. Each radial
445 gezelter 4168 contribution is shifted separately. One consequence of this is that
446     multipoles that reorient after leaving the cutoff sphere can re-enter
447     the cutoff sphere without perturbing the total energy.
448 mlamichh 4166
449 gezelter 4180 For the shifted potential (SP) method with the undamped kernel,
450     $v_{21}(r) = -\frac{1}{r^3} + \frac{1}{r_c^3}$ and $v_{22}(r) =
451     \frac{3}{r^3} - \frac{3}{r_c^3}$. The potential energy between a
452     central multipole and other multipolar sites goes smoothly to zero as
453     $r \rightarrow r_c$. However, the force and torque obtained from the
454     shifted potential (SP) are discontinuous at $r_c$. MD simulations
455     will still experience energy drift while operating under the SP
456     potential, but it may be suitable for Monte Carlo approaches where the
457     configurational energy differences are the primary quantity of
458     interest.
459 gezelter 4168
460 gezelter 4180 \subsection{The Self Term}
461 gezelter 4168 In the TSF, GSF, and SP methods, a self-interaction is retained for
462     the central multipole interacting with its own image on the surface of
463     the cutoff sphere. This self interaction is nearly identical with the
464     self-terms that arise in the Ewald sum for multipoles. Complete
465     expressions for the self terms are presented in the first paper in
466 gezelter 4175 this series (Reference \onlinecite{PaperI}).
467 mlamichh 4162
468 gezelter 4168
469 gezelter 4170 \section{\label{sec:methodology}Methodology}
470 mlamichh 4166
471 gezelter 4170 To understand how the real-space multipole methods behave in computer
472     simulations, it is vital to test against established methods for
473     computing electrostatic interactions in periodic systems, and to
474     evaluate the size and sources of any errors that arise from the
475     real-space cutoffs. In the first paper of this series, we compared
476     the dipolar and quadrupolar energy expressions against analytic
477     expressions for ordered dipolar and quadrupolar
478 gezelter 4174 arrays.\cite{Sauer,LT,Nagai01081960,Nagai01091963} In this work, we
479     used the multipolar Ewald sum as a reference method for comparing
480     energies, forces, and torques for molecular models that mimic
481 gezelter 4175 disordered and ordered condensed-phase systems. The parameters used
482 gezelter 4207 in the test cases are given in table~\ref{tab:pars}.
483 gezelter 4174
484 gezelter 4175 \begin{table}
485     \caption{The parameters used in the systems used to evaluate the new
486     real-space methods. The most comprehensive test was a liquid
487     composed of 2000 SSDQ molecules with 48 dissolved ions (24 \ce{Na+} and 24 \ce{Cl-}
488     ions). This test excercises all orders of the multipolar
489 gezelter 4208 interactions developed in the first paper.\label{tab:pars}}
490 gezelter 4175 \begin{tabularx}{\textwidth}{r|cc|YYccc|Yccc} \hline
491     & \multicolumn{2}{c|}{LJ parameters} &
492     \multicolumn{5}{c|}{Electrostatic moments} & & & & \\
493     Test system & $\sigma$& $\epsilon$ & $C$ & $D$ &
494     $Q_{xx}$ & $Q_{yy}$ & $Q_{zz}$ & mass & $I_{xx}$ & $I_{yy}$ &
495     $I_{zz}$ \\ \cline{6-8}\cline{10-12}
496     & (\AA) & (kcal/mol) & (e) & (debye) & \multicolumn{3}{c|}{(debye \AA)} & (amu) & \multicolumn{3}{c}{(amu
497     \AA\textsuperscript{2})} \\ \hline
498     Soft Dipolar fluid & 3.051 & 0.152 & & 2.35 & & & & 18.0153 & 1.77&0.6145& 1.155 \\
499 gezelter 4180 Soft Dipolar solid & 2.837 & 1.0 & & 2.35 & & & & $10^4$ & 17.6 &17.6 & 0 \\
500 gezelter 4175 Soft Quadrupolar fluid & 3.051 & 0.152 & & & -1&-1&-2.5 & 18.0153 & 1.77&0.6145&1.155 \\
501 gezelter 4180 Soft Quadrupolar solid & 2.837 & 1.0 & & & -1&-1&-2.5 & $10^4$ & 17.6&17.6&0 \\
502 gezelter 4175 SSDQ water & 3.051 & 0.152 & & 2.35 & -1.35&0&-0.68 & 18.0153 & 1.77&0.6145&1.155 \\
503     \ce{Na+} & 2.579 & 0.118 & +1& & & & & 22.99 & & &\\
504     \ce{Cl-} & 4.445 & 0.1 & -1& & & & & 35.4527& & & \\ \hline
505     \end{tabularx}
506     \end{table}
507     The systems consist of pure multipolar solids (both dipole and
508     quadrupole), pure multipolar liquids (both dipole and quadrupole), a
509     fluid composed of sites containing both dipoles and quadrupoles
510     simultaneously, and a final test case that includes ions with point
511     charges in addition to the multipolar fluid. The solid-phase
512     parameters were chosen so that the systems can explore some
513     orientational freedom for the multipolar sites, while maintaining
514     relatively strict translational order. The SSDQ model used here is
515     not a particularly accurate water model, but it does test
516     dipole-dipole, dipole-quadrupole, and quadrupole-quadrupole
517     interactions at roughly the same magnitudes. The last test case, SSDQ
518     water with dissolved ions, exercises \textit{all} levels of the
519     multipole-multipole interactions we have derived so far and represents
520     the most complete test of the new methods.
521 mlamichh 4166
522 gezelter 4175 In the following section, we present results for the total
523     electrostatic energy, as well as the electrostatic contributions to
524     the force and torque on each molecule. These quantities have been
525     computed using the SP, TSF, and GSF methods, as well as a hard cutoff,
526 gezelter 4180 and have been compared with the values obtained from the multipolar
527     Ewald sum. In Monte Carlo (MC) simulations, the energy differences
528 gezelter 4175 between two configurations is the primary quantity that governs how
529 gezelter 4191 the simulation proceeds. These differences are the most important
530 gezelter 4175 indicators of the reliability of a method even if the absolute
531     energies are not exact. For each of the multipolar systems listed
532     above, we have compared the change in electrostatic potential energy
533     ($\Delta E$) between 250 statistically-independent configurations. In
534     molecular dynamics (MD) simulations, the forces and torques govern the
535     behavior of the simulation, so we also compute the electrostatic
536     contributions to the forces and torques.
537    
538     \subsection{Implementation}
539     The real-space methods developed in the first paper in this series
540     have been implemented in our group's open source molecular simulation
541 gezelter 4187 program, OpenMD,\cite{Meineke05,openmd} which was used for all calculations in
542 gezelter 4175 this work. The complementary error function can be a relatively slow
543     function on some processors, so all of the radial functions are
544     precomputed on a fine grid and are spline-interpolated to provide
545     values when required.
546    
547     Using the same simulation code, we compare to a multipolar Ewald sum
548     with a reciprocal space cutoff, $k_\mathrm{max} = 7$. Our version of
549     the Ewald sum is a re-implementation of the algorithm originally
550     proposed by Smith that does not use the particle mesh or smoothing
551 gezelter 4207 approximations.\cite{Smith82,Smith98} This implementation was tested
552     extensively against the analytic energy constants for the multipolar
553     lattices that are discussed in reference \onlinecite{PaperI}. In all
554     cases discussed below, the quantities being compared are the
555     electrostatic contributions to energies, force, and torques. All
556     other contributions to these quantities (i.e. from Lennard-Jones
557     interactions) are removed prior to the comparisons.
558 gezelter 4175
559     The convergence parameter ($\alpha$) also plays a role in the balance
560     of the real-space and reciprocal-space portions of the Ewald
561     calculation. Typical molecular mechanics packages set this to a value
562     that depends on the cutoff radius and a tolerance (typically less than
563     $1 \times 10^{-4}$ kcal/mol). Smaller tolerances are typically
564     associated with increasing accuracy at the expense of computational
565     time spent on the reciprocal-space portion of the
566     summation.\cite{Perram88,Essmann:1995pb} A default tolerance of $1 \times
567     10^{-8}$ kcal/mol was used in all Ewald calculations, resulting in
568     Ewald coefficient 0.3119 \AA$^{-1}$ for a cutoff radius of 12 \AA.
569    
570     The real-space models have self-interactions that provide
571     contributions to the energies only. Although the self interaction is
572     a rapid calculation, we note that in systems with fluctuating charges
573     or point polarizabilities, the self-term is not static and must be
574     recomputed at each time step.
575    
576 gezelter 4170 \subsection{Model systems}
577 gezelter 4180 To sample independent configurations of the multipolar crystals, body
578     centered cubic (bcc) crystals, which exhibit the minimum energy
579     structures for point dipoles, were generated using 3,456 molecules.
580     The multipoles were translationally locked in their respective crystal
581     sites for equilibration at a relatively low temperature (50K) so that
582     dipoles or quadrupoles could freely explore all accessible
583     orientations. The translational constraints were then removed, the
584     systems were re-equilibrated, and the crystals were simulated for an
585     additional 10 ps in the microcanonical (NVE) ensemble with an average
586     temperature of 50 K. The balance between moments of inertia and
587     particle mass were chosen to allow orientational sampling without
588     significant translational motion. Configurations were sampled at
589     equal time intervals in order to compare configurational energy
590     differences. The crystals were simulated far from the melting point
591     in order to avoid translational deformation away of the ideal lattice
592     geometry.
593 gezelter 4170
594 gezelter 4180 For dipolar, quadrupolar, and mixed-multipole \textit{liquid}
595     simulations, each system was created with 2,048 randomly-oriented
596     molecules. These were equilibrated at a temperature of 300K for 1 ns.
597     Each system was then simulated for 1 ns in the microcanonical (NVE)
598     ensemble. We collected 250 different configurations at equal time
599     intervals. For the liquid system that included ionic species, we
600     converted 48 randomly-distributed molecules into 24 \ce{Na+} and 24
601     \ce{Cl-} ions and re-equilibrated. After equilibration, the system was
602     run under the same conditions for 1 ns. A total of 250 configurations
603     were collected. In the following comparisons of energies, forces, and
604     torques, the Lennard-Jones potentials were turned off and only the
605     purely electrostatic quantities were compared with the same values
606     obtained via the Ewald sum.
607 gezelter 4170
608     \subsection{Accuracy of Energy Differences, Forces and Torques}
609     The pairwise summation techniques (outlined above) were evaluated for
610     use in MC simulations by studying the energy differences between
611     different configurations. We took the Ewald-computed energy
612     difference between two conformations to be the correct behavior. An
613     ideal performance by one of the new methods would reproduce these
614     energy differences exactly. The configurational energies being used
615     here contain only contributions from electrostatic interactions.
616     Lennard-Jones interactions were omitted from the comparison as they
617     should be identical for all methods.
618    
619     Since none of the real-space methods provide exact energy differences,
620 gezelter 4180 we used least square regressions analysis for the six different
621 gezelter 4170 molecular systems to compare $\Delta E$ from Hard, SP, GSF, and TSF
622     with the multipolar Ewald reference method. Unitary results for both
623     the correlation (slope) and correlation coefficient for these
624     regressions indicate perfect agreement between the real-space method
625     and the multipolar Ewald sum.
626    
627     Molecular systems were run long enough to explore independent
628     configurations and 250 configurations were recorded for comparison.
629     Each system provided 31,125 energy differences for a total of 186,750
630     data points. Similarly, the magnitudes of the forces and torques have
631 gezelter 4180 also been compared using least squares regression analysis. In the
632 gezelter 4170 forces and torques comparison, the magnitudes of the forces acting in
633     each molecule for each configuration were evaluated. For example, our
634     dipolar liquid simulation contains 2048 molecules and there are 250
635     different configurations for each system resulting in 3,072,000 data
636     points for comparison of forces and torques.
637    
638 mlamichh 4166 \subsection{Analysis of vector quantities}
639 gezelter 4170 Getting the magnitudes of the force and torque vectors correct is only
640     part of the issue for carrying out accurate molecular dynamics
641     simulations. Because the real space methods reweight the different
642     orientational contributions to the energies, it is also important to
643     understand how the methods impact the \textit{directionality} of the
644     force and torque vectors. Fisher developed a probablity density
645     function to analyse directional data sets,
646 mlamichh 4162 \begin{equation}
647 gezelter 4170 p_f(\theta) = \frac{\kappa}{2 \sinh\kappa}\sin\theta e^{\kappa \cos\theta}
648 mlamichh 4162 \label{eq:pdf}
649     \end{equation}
650 gezelter 4170 where $\kappa$ measures directional dispersion of the data around the
651     mean direction.\cite{fisher53} This quantity $(\kappa)$ can be
652     estimated as a reciprocal of the circular variance.\cite{Allen91} To
653     quantify the directional error, forces obtained from the Ewald sum
654     were taken as the mean (or correct) direction and the angle between
655     the forces obtained via the Ewald sum and the real-space methods were
656     evaluated,
657 mlamichh 4162 \begin{equation}
658 gezelter 4170 \cos\theta_i = \frac{\vec{f}_i^\mathrm{~Ewald} \cdot
659     \vec{f}_i^\mathrm{~GSF}}{\left|\vec{f}_i^\mathrm{~Ewald}\right| \left|\vec{f}_i^\mathrm{~GSF}\right|}
660     \end{equation}
661     The total angular displacement of the vectors was calculated as,
662     \begin{equation}
663     R = \sqrt{\left(\sum\limits_{i=1}^N \cos\theta_i\right)^2 + \left(\sum\limits_{i=1}^N \sin\theta_i\right)^2}
664 mlamichh 4162 \label{eq:displacement}
665     \end{equation}
666 gezelter 4170 where $N$ is number of force vectors. The circular variance is
667     defined as
668     \begin{equation}
669     \mathrm{Var}(\theta) \approx 1/\kappa = 1 - R/N
670     \end{equation}
671     The circular variance takes on values between from 0 to 1, with 0
672     indicating a perfect directional match between the Ewald force vectors
673     and the real-space forces. Lower values of $\mathrm{Var}(\theta)$
674     correspond to higher values of $\kappa$, which indicates tighter
675     clustering of the real-space force vectors around the Ewald forces.
676 mlamichh 4162
677 gezelter 4170 A similar analysis was carried out for the electrostatic contribution
678     to the molecular torques as well as forces.
679    
680 mlamichh 4166 \subsection{Energy conservation}
681 gezelter 4170 To test conservation the energy for the methods, the mixed molecular
682     system of 2000 SSDQ water molecules with 24 \ce{Na+} and 24 \ce{Cl-}
683     ions was run for 1 ns in the microcanonical ensemble at an average
684     temperature of 300K. Each of the different electrostatic methods
685     (Ewald, Hard, SP, GSF, and TSF) was tested for a range of different
686     damping values. The molecular system was started with same initial
687     positions and velocities for all cutoff methods. The energy drift
688     ($\delta E_1$) and standard deviation of the energy about the slope
689     ($\delta E_0$) were evaluated from the total energy of the system as a
690     function of time. Although both measures are valuable at
691     investigating new methods for molecular dynamics, a useful interaction
692     model must allow for long simulation times with minimal energy drift.
693 mlamichh 4114
694 mlamichh 4166 \section{\label{sec:result}RESULTS}
695     \subsection{Configurational energy differences}
696 gezelter 4174
697 mlamichh 4114 \begin{figure}
698 gezelter 4174 \centering
699 gezelter 4191 \includegraphics[width=0.85\linewidth]{energyPlot_slopeCorrelation_combined.eps}
700 gezelter 4174 \caption{Statistical analysis of the quality of configurational
701     energy differences for the real-space electrostatic methods
702     compared with the reference Ewald sum. Results with a value equal
703     to 1 (dashed line) indicate $\Delta E$ values indistinguishable
704     from those obtained using the multipolar Ewald sum. Different
705     values of the cutoff radius are indicated with different symbols
706     (9\AA\ = circles, 12\AA\ = squares, and 15\AA\ = inverted
707 gezelter 4208 triangles).\label{fig:slopeCorr_energy}}
708 gezelter 4174 \end{figure}
709    
710     The combined correlation coefficient and slope for all six systems is
711     shown in Figure ~\ref{fig:slopeCorr_energy}. Most of the methods
712 gezelter 4175 reproduce the Ewald configurational energy differences with remarkable
713     fidelity. Undamped hard cutoffs introduce a significant amount of
714     random scatter in the energy differences which is apparent in the
715     reduced value of the correlation coefficient for this method. This
716     can be easily understood as configurations which exhibit small
717     traversals of a few dipoles or quadrupoles out of the cutoff sphere
718     will see large energy jumps when hard cutoffs are used. The
719 gezelter 4174 orientations of the multipoles (particularly in the ordered crystals)
720 gezelter 4175 mean that these energy jumps can go in either direction, producing a
721     significant amount of random scatter, but no systematic error.
722 gezelter 4174
723     The TSF method produces energy differences that are highly correlated
724     with the Ewald results, but it also introduces a significant
725     systematic bias in the values of the energies, particularly for
726     smaller cutoff values. The TSF method alters the distance dependence
727     of different orientational contributions to the energy in a
728     non-uniform way, so the size of the cutoff sphere can have a large
729 gezelter 4175 effect, particularly for the crystalline systems.
730 gezelter 4174
731     Both the SP and GSF methods appear to reproduce the Ewald results with
732     excellent fidelity, particularly for moderate damping ($\alpha =
733 gezelter 4175 0.1-0.2$\AA$^{-1}$) and with a commonly-used cutoff value ($r_c =
734     12$\AA). With the exception of the undamped hard cutoff, and the TSF
735     method with short cutoffs, all of the methods would be appropriate for
736     use in Monte Carlo simulations.
737 gezelter 4174
738 mlamichh 4114 \subsection{Magnitude of the force and torque vectors}
739 gezelter 4174
740 gezelter 4175 The comparisons of the magnitudes of the forces and torques for the
741     data accumulated from all six systems are shown in Figures
742 gezelter 4174 ~\ref{fig:slopeCorr_force} and \ref{fig:slopeCorr_torque}. The
743     correlation and slope for the forces agree well with the Ewald sum
744 gezelter 4175 even for the hard cutoffs.
745 gezelter 4174
746 gezelter 4175 For systems of molecules with only multipolar interactions, the pair
747     energy contributions are quite short ranged. Moreover, the force
748     decays more rapidly than the electrostatic energy, hence the hard
749     cutoff method can also produce reasonable agreement for this quantity.
750     Although the pure cutoff gives reasonably good electrostatic forces
751     for pairs of molecules included within each other's cutoff spheres,
752     the discontinuity in the force at the cutoff radius can potentially
753     cause energy conservation problems as molecules enter and leave the
754     cutoff spheres. This is discussed in detail in section
755     \ref{sec:conservation}.
756 gezelter 4174
757     The two shifted-force methods (GSF and TSF) exhibit a small amount of
758     systematic variation and scatter compared with the Ewald forces. The
759     shifted-force models intentionally perturb the forces between pairs of
760 gezelter 4175 molecules inside each other's cutoff spheres in order to correct the
761     energy conservation issues, and this perturbation is evident in the
762     statistics accumulated for the molecular forces. The GSF
763 gezelter 4180 perturbations are minimal, particularly for moderate damping and
764 gezelter 4174 commonly-used cutoff values ($r_c = 12$\AA). The TSF method shows
765     reasonable agreement in the correlation coefficient but again the
766     systematic error in the forces is concerning if replication of Ewald
767     forces is desired.
768    
769 gezelter 4208 It is important to note that the forces and torques from the SP and
770     the Hard cutoffs are not identical. The SP method shifts each
771     orientational contribution separately (e.g. the dipole-dipole dot
772     product is shifted by a different function than the dipole-distance
773     products), while the hard cutoff contains no orientation-dependent
774     shifting. The forces and torques for these methods therefore diverge
775     for multipoles even though the forces for point charges are identical.
776    
777 mlamichh 4114 \begin{figure}
778 gezelter 4174 \centering
779 gezelter 4191 \includegraphics[width=0.6\linewidth]{forcePlot_slopeCorrelation_combined.eps}
780 gezelter 4174 \caption{Statistical analysis of the quality of the force vector
781     magnitudes for the real-space electrostatic methods compared with
782     the reference Ewald sum. Results with a value equal to 1 (dashed
783     line) indicate force magnitude values indistinguishable from those
784     obtained using the multipolar Ewald sum. Different values of the
785     cutoff radius are indicated with different symbols (9\AA\ =
786 gezelter 4208 circles, 12\AA\ = squares, and 15\AA\ = inverted
787     triangles).\label{fig:slopeCorr_force}}
788 gezelter 4174 \end{figure}
789    
790    
791 mlamichh 4114 \begin{figure}
792 gezelter 4174 \centering
793 gezelter 4191 \includegraphics[width=0.6\linewidth]{torquePlot_slopeCorrelation_combined.eps}
794 gezelter 4174 \caption{Statistical analysis of the quality of the torque vector
795     magnitudes for the real-space electrostatic methods compared with
796     the reference Ewald sum. Results with a value equal to 1 (dashed
797     line) indicate force magnitude values indistinguishable from those
798     obtained using the multipolar Ewald sum. Different values of the
799     cutoff radius are indicated with different symbols (9\AA\ =
800 gezelter 4208 circles, 12\AA\ = squares, and 15\AA\ = inverted
801     triangles).\label{fig:slopeCorr_torque}}
802 gezelter 4174 \end{figure}
803    
804     The torques (Fig. \ref{fig:slopeCorr_torque}) appear to be
805     significantly influenced by the choice of real-space method. The
806     torque expressions have the same distance dependence as the energies,
807     which are naturally longer-ranged expressions than the inter-site
808     forces. Torques are also quite sensitive to orientations of
809     neighboring molecules, even those that are near the cutoff distance.
810    
811     The results shows that the torque from the hard cutoff method
812     reproduces the torques in quite good agreement with the Ewald sum.
813 gezelter 4175 The other real-space methods can cause some deviations, but excellent
814     agreement with the Ewald sum torques is recovered at moderate values
815     of the damping coefficient ($\alpha = 0.1-0.2$\AA$^{-1}$) and cutoff
816     radius ($r_c \ge 12$\AA). The TSF method exhibits only fair agreement
817     in the slope when compared with the Ewald torques even for larger
818     cutoff radii. It appears that the severity of the perturbations in
819     the TSF method are most in evidence for the torques.
820 gezelter 4174
821 mlamichh 4114 \subsection{Directionality of the force and torque vectors}
822 mlamichh 4162
823 gezelter 4174 The accurate evaluation of force and torque directions is just as
824     important for molecular dynamics simulations as the magnitudes of
825     these quantities. Force and torque vectors for all six systems were
826     analyzed using Fisher statistics, and the quality of the vector
827     directionality is shown in terms of circular variance
828 gezelter 4180 ($\mathrm{Var}(\theta)$) in figure
829 gezelter 4174 \ref{fig:slopeCorr_circularVariance}. The force and torque vectors
830 gezelter 4175 from the new real-space methods exhibit nearly-ideal Fisher probability
831 gezelter 4174 distributions (Eq.~\ref{eq:pdf}). Both the hard and SP cutoff methods
832     exhibit the best vectorial agreement with the Ewald sum. The force and
833     torque vectors from GSF method also show good agreement with the Ewald
834     method, which can also be systematically improved by using moderate
835 gezelter 4175 damping and a reasonable cutoff radius. For $\alpha = 0.2$ and $r_c =
836 gezelter 4174 12$\AA, we observe $\mathrm{Var}(\theta) = 0.00206$, which corresponds
837 gezelter 4175 to a distribution with 95\% of force vectors within $6.37^\circ$ of
838     the corresponding Ewald forces. The TSF method produces the poorest
839 gezelter 4174 agreement with the Ewald force directions.
840    
841 gezelter 4175 Torques are again more perturbed than the forces by the new real-space
842     methods, but even here the variance is reasonably small. For the same
843 gezelter 4174 method (GSF) with the same parameters ($\alpha = 0.2, r_c = 12$\AA),
844     the circular variance was 0.01415, corresponds to a distribution which
845     has 95\% of torque vectors are within $16.75^\circ$ of the Ewald
846     results. Again, the direction of the force and torque vectors can be
847     systematically improved by varying $\alpha$ and $r_c$.
848    
849 mlamichh 4114 \begin{figure}
850 gezelter 4174 \centering
851 gezelter 4191 \includegraphics[width=0.65\linewidth]{Variance_forceNtorque_modified.eps}
852 gezelter 4174 \caption{The circular variance of the direction of the force and
853     torque vectors obtained from the real-space methods around the
854     reference Ewald vectors. A variance equal to 0 (dashed line)
855     indicates direction of the force or torque vectors are
856     indistinguishable from those obtained from the Ewald sum. Here
857     different symbols represent different values of the cutoff radius
858 gezelter 4208 (9 \AA\ = circle, 12 \AA\ = square, 15 \AA\ = inverted triangle)\label{fig:slopeCorr_circularVariance}}
859 gezelter 4174 \end{figure}
860 gezelter 4171
861 gezelter 4175 \subsection{Energy conservation\label{sec:conservation}}
862 gezelter 4171
863 gezelter 4174 We have tested the conservation of energy one can expect to see with
864     the new real-space methods using the SSDQ water model with a small
865     fraction of solvated ions. This is a test system which exercises all
866     orders of multipole-multipole interactions derived in the first paper
867     in this series and provides the most comprehensive test of the new
868     methods. A liquid-phase system was created with 2000 water molecules
869 gezelter 4175 and 48 dissolved ions at a density of 0.98 g cm$^{-3}$ and a
870 gezelter 4206 temperature of 300K. After equilibration in the canonical (NVT)
871     ensemble using a Nos\'e-Hoover thermostat, this liquid-phase system
872     was run for 1 ns in the microcanonical (NVE) ensemble under the Ewald,
873     Hard, SP, GSF, and TSF methods with a cutoff radius of 12\AA. The
874     value of the damping coefficient was also varied from the undamped
875     case ($\alpha = 0$) to a heavily damped case ($\alpha = 0.3$
876     \AA$^{-1}$) for all of the real space methods. A sample was also run
877     using the multipolar Ewald sum with the same real-space cutoff.
878 gezelter 4174
879     In figure~\ref{fig:energyDrift} we show the both the linear drift in
880     energy over time, $\delta E_1$, and the standard deviation of energy
881     fluctuations around this drift $\delta E_0$. Both of the
882     shifted-force methods (GSF and TSF) provide excellent energy
883 gezelter 4181 conservation (drift less than $10^{-5}$ kcal / mol / ns / particle),
884 gezelter 4174 while the hard cutoff is essentially unusable for molecular dynamics.
885     SP provides some benefit over the hard cutoff because the energetic
886     jumps that happen as particles leave and enter the cutoff sphere are
887 gezelter 4175 somewhat reduced, but like the Wolf method for charges, the SP method
888     would not be as useful for molecular dynamics as either of the
889     shifted-force methods.
890 gezelter 4174
891     We note that for all tested values of the cutoff radius, the new
892     real-space methods can provide better energy conservation behavior
893 gezelter 4208 than the multipolar Ewald sum, even when relatively large $k$-space
894     cutoff values are utilized.
895 gezelter 4174
896 mlamichh 4114 \begin{figure}
897 gezelter 4171 \centering
898 gezelter 4190 \includegraphics[width=\textwidth]{newDrift_12.eps}
899 gezelter 4210 \caption{Energy conservation of the real-space methods for the SSDQ
900     water/ion system. $\delta \mathrm{E}_1$ is the linear drift in
901     energy over time (in kcal/mol/particle/ns) and $\delta
902     \mathrm{E}_0$ is the standard deviation of energy fluctuations
903     around this drift (in kcal/mol/particle). Points that appear in
904     the green region at the bottom exhibit better energy conservation
905     than would be obtained using common parameters for Ewald-based
906     electrostatics.\label{fig:energyDrift}}
907 gezelter 4171 \end{figure}
908    
909 gezelter 4206 \subsection{Reproduction of Structural \& Dynamical Features\label{sec:structure}}
910     The most important test of the modified interaction potentials is the
911     fidelity with which they can reproduce structural features and
912     dynamical properties in a liquid. One commonly-utilized measure of
913     structural ordering is the pair distribution function, $g(r)$, which
914     measures local density deviations in relation to the bulk density. In
915     the electrostatic approaches studied here, the short-range repulsion
916     from the Lennard-Jones potential is identical for the various
917     electrostatic methods, and since short range repulsion determines much
918     of the local liquid ordering, one would not expect to see many
919     differences in $g(r)$. Indeed, the pair distributions are essentially
920     identical for all of the electrostatic methods studied (for each of
921     the different systems under investigation). An example of this
922     agreement for the SSDQ water/ion system is shown in
923     Fig. \ref{fig:gofr}.
924 gezelter 4174
925 gezelter 4203 \begin{figure}
926     \centering
927 gezelter 4206 \includegraphics[width=\textwidth]{gofr_ssdqc.eps}
928     \caption{The pair distribution functions, $g(r)$, for the SSDQ
929     water/ion system obtained using the different real-space methods are
930     essentially identical with the result from the Ewald
931 gezelter 4208 treatment.\label{fig:gofr}}
932 gezelter 4203 \end{figure}
933    
934 gezelter 4210 There is a minor overstructuring of the first solvation shell when
935     using TSF or when overdamping with any of the real-space methods.
936     With moderate damping, GSF and SP produce pair distributions that are
937     identical (within numerical noise) to their Ewald counterparts. The
938     degree of overstructuring can be measured most easily using the
939     coordination number,
940     \begin{equation}
941     n_C = 4\pi\rho \int_{0}^{a}r^2\text{g}(r)dr,
942     \end{equation}
943     where $\rho$ is the number density of the site-site pair interactions,
944     $a$ and is the radial location of the minima following the first peak
945     in $g(r)$ ($a = 4.2$ \AA for the SSDQ water/ion system). The
946     coordination number is shown as a function of the damping coefficient
947     for all of the real space methods in Fig. \ref{fig:Props}.
948 gezelter 4203
949 gezelter 4210 A more demanding test of modified electrostatics is the average value
950     of the electrostatic energy $\langle U_\mathrm{elect} \rangle / N$
951     which is obtained by sampling the liquid-state configurations
952     experienced by a liquid evolving entirely under the influence of each
953     of the methods. In fig \ref{fig:Props} we demonstrate how $\langle
954     U_\mathrm{elect} \rangle / N$ varies with the damping parameter,
955     $\alpha$, for each of the methods.
956 gezelter 4206
957     As in the crystals studied in the first paper, damping is important
958     for converging the mean electrostatic energy values, particularly for
959     the two shifted force methods (GSF and TSF). A value of $\alpha
960     \approx 0.2$ \AA$^{-1}$ is sufficient to converge the SP and GSF
961     energies with a cutoff of 12 \AA, while shorter cutoffs require more
962 gezelter 4210 dramatic damping ($\alpha \approx 0.28$ \AA$^{-1}$ for $r_c = 9$ \AA).
963 gezelter 4206 Overdamping the real-space electrostatic methods occurs with $\alpha >
964 gezelter 4210 0.3$, causing the estimate of the electrostatic energy to drop below
965     the Ewald results.
966 gezelter 4206
967 gezelter 4203 These ``optimal'' values of the damping coefficient are slightly
968     larger than what were observed for DSF electrostatics for purely
969 gezelter 4210 point-charge systems, although the range $\alpha= 0.175 \rightarrow
970     0.225$ \AA$^{-1}$ for $r_c = 12$\AA\ appears to be an excellent
971     compromise for mixed charge/multipolar systems.
972 gezelter 4203
973     To test the fidelity of the electrostatic methods at reproducing
974 gezelter 4210 \textit{dynamics} in a multipolar liquid, it is also useful to look at
975 gezelter 4203 transport properties, particularly the diffusion constant,
976     \begin{equation}
977     D = \lim_{t \rightarrow \infty} \frac{1}{6 t} \langle \left|
978     \mathbf{r}(t) -\mathbf{r}(0) \right|^2 \rangle
979     \label{eq:diff}
980     \end{equation}
981     which measures long-time behavior and is sensitive to the forces on
982 gezelter 4210 the multipoles. The self-diffusion constants (D) were calculated from
983     linear fits to the long-time portion of the mean square displacement,
984     $\langle r^{2}(t) \rangle$.\cite{Allen87} In fig. \ref{fig:Props} we
985     demonstrate how the diffusion constant depends on the choice of
986     real-space methods and the damping coefficient. Both the SP and GSF
987     methods can obtain excellent agreement with Ewald again using moderate
988     damping.
989 gezelter 4203
990     In addition to translational diffusion, orientational relaxation times
991     were calculated for comparisons with the Ewald simulations and with
992 gezelter 4206 experiments. These values were determined from the same 1~ns
993     microcanonical trajectories used for translational diffusion by
994     calculating the orientational time correlation function,
995 gezelter 4203 \begin{equation}
996 gezelter 4206 C_l^\gamma(t) = \left\langle P_l\left[\hat{\mathbf{A}}_\gamma(t)
997     \cdot\hat{\mathbf{A}}_\gamma(0)\right]\right\rangle,
998 gezelter 4203 \label{eq:OrientCorr}
999     \end{equation}
1000     where $P_l$ is the Legendre polynomial of order $l$ and
1001 gezelter 4208 $\hat{\mathbf{A}}_\gamma$ is the unit vector for body axis $\gamma$.
1002     The reference frame used for our sample dipolar systems has the
1003     $z$-axis running along the dipoles, and for the SSDQ water model, the
1004     $y$-axis connects the two implied hydrogen atom positions. From the
1005     orientation autocorrelation functions, we can obtain time constants
1006     for rotational relaxation either by fitting an exponential function or
1007     by integrating the entire correlation function. In a good water
1008     model, these decay times would be comparable to water orientational
1009     relaxation times from nuclear magnetic resonance (NMR). The relaxation
1010     constant obtained from $C_2^y(t)$ is normally of experimental interest
1011     because it describes the relaxation of the principle axis connecting
1012     the hydrogen atoms. Thus, $C_2^y(t)$ can be compared to the
1013     intermolecular portion of the dipole-dipole relaxation from a proton
1014     NMR signal and should provide an estimate of the NMR relaxation time
1015     constant.\cite{Impey82}
1016 gezelter 4203
1017     Results for the diffusion constants and orientational relaxation times
1018 gezelter 4210 are shown in figure \ref{fig:Props}. From this data, it is apparent
1019 gezelter 4203 that the values for both $D$ and $\tau_2$ using the Ewald sum are
1020 gezelter 4206 reproduced with reasonable fidelity by the GSF method.
1021 gezelter 4203
1022 gezelter 4210 \begin{figure}
1023     \caption{Comparison of the structural and dynamic properties for the
1024     combined multipolar liquid (SSDQ water + ions) for all of the
1025     real-space methods with $r_c = 12$\AA. Electrostatic energies,
1026     $\langle U_\mathrm{elect} \rangle / N$ (in kcal / mol),
1027     coordination numbers, $n_C$, diffusion constants (in cm$^2$
1028     s$^{-1}$), and rotational correlation times (in fs) all show
1029     excellent agreement with Ewald results for damping coefficients in
1030     the range $\alpha= 0.175 \rightarrow 0.225$
1031     \AA$^{-1}$. \label{fig:Props}}
1032     \includegraphics[width=\textwidth]{properties.eps}
1033     \end{figure}
1034 gezelter 4203
1035    
1036 mlamichh 4114 \section{CONCLUSION}
1037 gezelter 4175 In the first paper in this series, we generalized the
1038     charge-neutralized electrostatic energy originally developed by Wolf
1039     \textit{et al.}\cite{Wolf:1999dn} to multipole-multipole interactions
1040     up to quadrupolar order. The SP method is essentially a
1041     multipole-capable version of the Wolf model. The SP method for
1042     multipoles provides excellent agreement with Ewald-derived energies,
1043     forces and torques, and is suitable for Monte Carlo simulations,
1044     although the forces and torques retain discontinuities at the cutoff
1045     distance that prevents its use in molecular dynamics.
1046 gezelter 4170
1047 gezelter 4175 We also developed two natural extensions of the damped shifted-force
1048 gezelter 4208 (DSF) model originally proposed by Zahn {\it et al.} and extended by
1049     Fennel and Gezelter.\cite{Zahn:2002hc,Fennell:2006lq} The GSF and TSF
1050     approaches provide smooth truncation of energies, forces, and torques
1051     at the real-space cutoff, and both converge to DSF electrostatics for
1052     point-charge interactions. The TSF model is based on a high-order
1053     truncated Taylor expansion which can be relatively perturbative inside
1054     the cutoff sphere. The GSF model takes the gradient from an images of
1055     the interacting multipole that has been projected onto the cutoff
1056     sphere to derive shifted force and torque expressions, and is a
1057     significantly more gentle approach.
1058 gezelter 4170
1059 gezelter 4208 The GSF method produced quantitative agreement with Ewald energy,
1060     force, and torques. It also performs well in conserving energy in MD
1061     simulations. The Taylor-shifted (TSF) model provides smooth dynamics,
1062     but these take place on a potential energy surface that is
1063     significantly perturbed from Ewald-based electrostatics. Because it
1064     performs relatively poorly compared with GSF, it may seem odd that
1065     that the TSF model was included in this work. However, the functional
1066     forms derived for the SP and GSF methods depend on the separation of
1067     orientational contributions that were made visible by the Taylor
1068     series of the electrostatic kernel at the cutoff radius. The TSF
1069     method also has the unique property that a large number of derivatives
1070     can be made to vanish at the cutoff radius. This property has proven
1071     useful in past treatments of the corrections to the fluctuation
1072     formula for dielectric constants.\cite{Izvekov:2008wo}
1073 gezelter 4175
1074 gezelter 4208 Reproduction of both structural and dynamical features in the liquid
1075     systems is remarkably good for both the SP and GSF models. Pair
1076     distribution functions are essentially equivalent to the same
1077     functions produced using Ewald-based electrostatics, and with moderate
1078     damping, a structural feature that directly probes the electrostatic
1079     interaction (e.g. the mean electrostatic potential energy) can also be
1080     made quantitative. Dynamical features are sensitive probes of the
1081     forces and torques produced by these methods, and even though the
1082     smooth behavior of forces is produced by perturbing the overall
1083     potential, the diffusion constants and orientational correlation times
1084     are quite close to the Ewald-based results.
1085 gezelter 4175
1086     The only cases we have found where the new GSF and SP real-space
1087     methods can be problematic are those which retain a bulk dipole moment
1088     at large distances (e.g. the $Z_1$ dipolar lattice). In ferroelectric
1089     materials, uniform weighting of the orientational contributions can be
1090     important for converging the total energy. In these cases, the
1091     damping function which causes the non-uniform weighting can be
1092     replaced by the bare electrostatic kernel, and the energies return to
1093     the expected converged values.
1094    
1095 gezelter 4208 Based on the results of this work, we can conclude that the GSF method
1096     is a suitable and efficient replacement for the Ewald sum for
1097     evaluating electrostatic interactions in modern MD simulations, and
1098     the SP meethod would be an excellent choice for Monte Carlo
1099     simulations where smooth forces and energy conservation are not
1100     important. Both the SP and GSF methods retain excellent fidelity to
1101     the Ewald energies, forces and torques. Additionally, the energy
1102     drift and fluctuations from the GSF electrostatics are significantly
1103     better than a multipolar Ewald sum for finite-sized reciprocal spaces.
1104 gezelter 4175
1105 gezelter 4208 As in all purely pairwise cutoff methods, the SP, GSF and TSF methods
1106     are expected to scale approximately {\it linearly} with system size,
1107     and are easily parallelizable. This should result in substantial
1108     reductions in the computational cost of performing large simulations.
1109     With the proper use of pre-computation and spline interpolation of the
1110     radial functions, the real-space methods are essentially the same cost
1111     as a simple real-space cutoff. They require no Fourier transforms or
1112     $k$-space sums, and guarantee the smooth handling of energies, forces,
1113     and torques as multipoles cross the real-space cutoff boundary.
1114    
1115     We are not suggesting that there is any flaw with the Ewald sum; in
1116     fact, it is the standard by which the SP, GSF, and TSF methods have
1117     been judged in this work. However, these results provide evidence
1118     that in the typical simulations performed today, the Ewald summation
1119     may no longer be required to obtain the level of accuracy most
1120     researchers have come to expect.
1121    
1122 gezelter 4180 \begin{acknowledgments}
1123     JDG acknowledges helpful discussions with Christopher
1124     Fennell. Support for this project was provided by the National
1125     Science Foundation under grant CHE-1362211. Computational time was
1126     provided by the Center for Research Computing (CRC) at the
1127     University of Notre Dame.
1128     \end{acknowledgments}
1129    
1130 gezelter 4167 %\bibliographystyle{aip}
1131 gezelter 4168 \newpage
1132 mlamichh 4114 \bibliography{references}
1133     \end{document}
1134    
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