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46 \begin{document}
47
48 %\preprint{AIP/123-QED}
49
50 \title{Real space electrostatics for multipoles. II. Comparisons with
51 the Ewald Sum}
52
53 \author{Madan Lamichhane}
54 \affiliation{Department of Physics, University of Notre Dame, Notre Dame, IN 46556}
55
56 \author{Kathie E. Newman}
57 \affiliation{Department of Physics, University of Notre Dame, Notre Dame, IN 46556}
58
59 \author{J. Daniel Gezelter}%
60 \email{gezelter@nd.edu.}
61 \affiliation{Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556
62 }
63
64 \date{\today}
65
66 \begin{abstract}
67 We report on tests of the shifted potential (SP), gradient shifted
68 force (GSF), and Taylor shifted force (TSF) real-space methods for
69 multipole interactions developed in the first paper in this series,
70 using the multipolar Ewald sum as a reference method. The tests were
71 carried out in a variety of condensed-phase environments designed to
72 test up to quadrupole-quadrupole interactions. Comparisons of the
73 energy differences between configurations, molecular forces, and
74 torques were used to analyze how well the real-space models perform
75 relative to the more computationally expensive Ewald treatment. We
76 have also investigated the energy conservation, structural, and
77 dynamical properties of the new methods in molecular dynamics
78 simulations. The SP method shows excellent agreement with
79 configurational energy differences, forces, and torques, and would
80 be suitable for use in Monte Carlo calculations. Of the two new
81 shifted-force methods, the GSF approach shows the best agreement
82 with Ewald-derived energies, forces, and torques and also exhibits
83 energy conservation properties that make it an excellent choice for
84 efficient computation of electrostatic interactions in molecular
85 dynamics simulations. Both SP and GSF are able to reproduce
86 structural and dyanamical properties in the liquid models with
87 excellent fidelity.
88 \end{abstract}
89
90 %\pacs{Valid PACS appear here}% PACS, the Physics and Astronomy
91 % Classification Scheme.
92 %\keywords{Electrostatics, Multipoles, Real-space}
93
94 \maketitle
95
96 \section{\label{sec:intro}Introduction}
97 Computing the interactions between electrostatic sites is one of the
98 most expensive aspects of molecular simulations. There have been
99 significant efforts to develop practical, efficient and convergent
100 methods for handling these interactions. Ewald's method is perhaps the
101 best known and most accurate method for evaluating energies, forces,
102 and torques in explicitly-periodic simulation cells. In this approach,
103 the conditionally convergent electrostatic energy is converted into
104 two absolutely convergent contributions, one which is carried out in
105 real space with a cutoff radius, and one in reciprocal
106 space.\cite{Ewald21,deLeeuw80,Smith81,Allen87}
107
108 When carried out as originally formulated, the reciprocal-space
109 portion of the Ewald sum exhibits relatively poor computational
110 scaling, making it prohibitive for large systems. By utilizing a
111 particle mesh and three dimensional fast Fourier transforms (FFT), the
112 particle-mesh Ewald (PME), particle-particle particle-mesh Ewald
113 (P\textsuperscript{3}ME), and smooth particle mesh Ewald (SPME)
114 methods can decrease the computational cost from $O(N^2)$ down to $O(N
115 \log
116 N)$.\cite{Takada93,Gunsteren94,Gunsteren95,Darden:1993pd,Essmann:1995pb}
117
118 Because of the artificial periodicity required for the Ewald sum,
119 interfacial molecular systems such as membranes and liquid-vapor
120 interfaces require modifications to the method. Parry's extension of
121 the three dimensional Ewald sum is appropriate for slab
122 geometries.\cite{Parry:1975if} Modified Ewald methods that were
123 developed to handle two-dimensional (2-D) electrostatic
124 interactions.\cite{Parry:1975if,Parry:1976fq,Clarke77,Perram79,Rhee:1989kl}
125 These methods were originally quite computationally
126 expensive.\cite{Spohr97,Yeh99} There have been several successful
127 efforts that reduced the computational cost of 2-D lattice summations,
128 bringing them more in line with the scaling for the full 3-D
129 treatments.\cite{Yeh99,Kawata01,Arnold02,deJoannis02,Brodka04} The
130 inherent periodicity required by the Ewald method can also be
131 problematic in a number of protein/solvent and ionic solution
132 environments.\cite{Roberts94,Roberts95,Luty96,Hunenberger99a,Hunenberger99b,Weber00,Fennell:2006lq}
133
134 \subsection{Real-space methods}
135 Wolf \textit{et al.}\cite{Wolf:1999dn} proposed a real space $O(N)$
136 method for calculating electrostatic interactions between point
137 charges. They argued that the effective Coulomb interaction in most
138 condensed phase systems is effectively short
139 ranged.\cite{Wolf92,Wolf95} For an ordered lattice (e.g., when
140 computing the Madelung constant of an ionic solid), the material can
141 be considered as a set of ions interacting with neutral dipolar or
142 quadrupolar ``molecules'' giving an effective distance dependence for
143 the electrostatic interactions of $r^{-5}$ (see figure
144 \ref{fig:schematic}). If one views the \ce{NaCl} crystal as a simple
145 cubic (SC) structure with an octupolar \ce{(NaCl)4} basis, the
146 electrostatic energy per ion converges more rapidly to the Madelung
147 energy than the dipolar approximation.\cite{Wolf92} To find the
148 correct Madelung constant, Lacman suggested that the NaCl structure
149 could be constructed in a way that the finite crystal terminates with
150 complete \ce{(NaCl)4} molecules.\cite{Lacman65} The central ion sees
151 what is effectively a set of octupoles at large distances. These facts
152 suggest that the Madelung constants are relatively short ranged for
153 perfect ionic crystals.\cite{Wolf:1999dn} For this reason, careful
154 application of Wolf's method can provide accurate estimates of
155 Madelung constants using relatively short cutoff radii.
156
157 Direct truncation of interactions at a cutoff radius creates numerical
158 errors. Wolf \textit{et al.} suggest that truncation errors are due
159 to net charge remaining inside the cutoff sphere.\cite{Wolf:1999dn} To
160 neutralize this charge they proposed placing an image charge on the
161 surface of the cutoff sphere for every real charge inside the cutoff.
162 These charges are present for the evaluation of both the pair
163 interaction energy and the force, although the force expression
164 maintains a discontinuity at the cutoff sphere. In the original Wolf
165 formulation, the total energy for the charge and image were not equal
166 to the integral of the force expression, and as a result, the total
167 energy would not be conserved in molecular dynamics (MD)
168 simulations.\cite{Zahn:2002hc} Zahn \textit{et al.}, and Fennel and
169 Gezelter later proposed shifted force variants of the Wolf method with
170 commensurate force and energy expressions that do not exhibit this
171 problem.\cite{Zahn:2002hc,Fennell:2006lq} Related real-space methods
172 were also proposed by Chen \textit{et
173 al.}\cite{Chen:2004du,Chen:2006ii,Denesyuk:2008ez,Rodgers:2006nw}
174 and by Wu and Brooks.\cite{Wu:044107} Recently, Fukuda has successfuly
175 used additional neutralization of higher order moments for systems of
176 point charges.\cite{Fukuda:2013sf}
177
178 \begin{figure}
179 \centering
180 \includegraphics[width=\linewidth]{schematic.eps}
181 \caption{Top: Ionic systems exhibit local clustering of dissimilar
182 charges (in the smaller grey circle), so interactions are
183 effectively charge-multipole at longer distances. With hard
184 cutoffs, motion of individual charges in and out of the cutoff
185 sphere can break the effective multipolar ordering. Bottom:
186 dipolar crystals and fluids have a similar effective
187 \textit{quadrupolar} ordering (in the smaller grey circles), and
188 orientational averaging helps to reduce the effective range of the
189 interactions in the fluid. Placement of reversed image multipoles
190 on the surface of the cutoff sphere recovers the effective
191 higher-order multipole behavior. \label{fig:schematic}}
192 \end{figure}
193
194 One can make a similar effective range argument for crystals of point
195 \textit{multipoles}. The Luttinger and Tisza treatment of energy
196 constants for dipolar lattices utilizes 24 basis vectors that contain
197 dipoles at the eight corners of a unit cube.\cite{LT} Only three of
198 these basis vectors, $X_1, Y_1, \mathrm{~and~} Z_1,$ retain net dipole
199 moments, while the rest have zero net dipole and retain contributions
200 only from higher order multipoles. The lowest-energy crystalline
201 structures are built out of basis vectors that have only residual
202 quadrupolar moments (e.g. the $Z_5$ array). In these low energy
203 structures, the effective interaction between a dipole at the center
204 of a crystal and a group of eight dipoles farther away is
205 significantly shorter ranged than the $r^{-3}$ that one would expect
206 for raw dipole-dipole interactions. Only in crystals which retain a
207 bulk dipole moment (e.g. ferroelectrics) does the analogy with the
208 ionic crystal break down -- ferroelectric dipolar crystals can exist,
209 while ionic crystals with net charge in each unit cell would be
210 unstable.
211
212 In ionic crystals, real-space truncation can break the effective
213 multipolar arrangements (see Fig. \ref{fig:schematic}), causing
214 significant swings in the electrostatic energy as individual ions move
215 back and forth across the boundary. This is why the image charges are
216 necessary for the Wolf sum to exhibit rapid convergence. Similarly,
217 the real-space truncation of point multipole interactions breaks
218 higher order multipole arrangements, and image multipoles are required
219 for real-space treatments of electrostatic energies.
220
221 The shorter effective range of electrostatic interactions is not
222 limited to perfect crystals, but can also apply in disordered fluids.
223 Even at elevated temperatures, there is local charge balance in an
224 ionic liquid, where each positive ion has surroundings dominated by
225 negative ions and vice versa. The reversed-charge images on the
226 cutoff sphere that are integral to the Wolf and DSF approaches retain
227 the effective multipolar interactions as the charges traverse the
228 cutoff boundary.
229
230 In multipolar fluids (see Fig. \ref{fig:schematic}) there is
231 significant orientational averaging that additionally reduces the
232 effect of long-range multipolar interactions. The image multipoles
233 that are introduced in the TSF, GSF, and SP methods mimic this effect
234 and reduce the effective range of the multipolar interactions as
235 interacting molecules traverse each other's cutoff boundaries.
236
237 Forces and torques acting on atomic sites are fundamental in driving
238 dynamics in molecular simulations, and the damped shifted force (DSF)
239 energy kernel provides consistent energies and forces on charged atoms
240 within the cutoff sphere. Both the energy and the force go smoothly to
241 zero as an atom aproaches the cutoff radius. The comparisons of the
242 accuracy these quantities between the DSF kernel and SPME was
243 surprisingly good.\cite{Fennell:2006lq} As a result, the DSF method
244 has seen increasing use in molecular systems with relatively uniform
245 charge
246 densities.\cite{English08,Kannam:2012rr,Space12,Lawrence13,Acevedo13,Shi:2013ij,Vergne13}
247
248 \subsection{The damping function}
249 The damping function has been discussed in detail in the first paper
250 of this series.\cite{PaperI} The $1/r$ Coulombic kernel for the
251 interactions between point charges can be replaced by the
252 complementary error function $\mathrm{erfc}(\alpha r)/r$ to accelerate
253 convergence, where $\alpha$ is a damping parameter with units of
254 inverse distance. Altering the value of $\alpha$ is equivalent to
255 changing the width of Gaussian charge distributions that replace each
256 point charge, as Coulomb integrals with Gaussian charge distributions
257 produce complementary error functions when truncated at a finite
258 distance.
259
260 With moderate damping coefficients, $\alpha \sim 0.2$, the DSF method
261 produced very good agreement with SPME for interaction energies,
262 forces and torques for charge-charge
263 interactions.\cite{Fennell:2006lq}
264
265 \subsection{Point multipoles in molecular modeling}
266 Coarse-graining approaches which treat entire molecular subsystems as
267 a single rigid body are now widely used. A common feature of many
268 coarse-graining approaches is simplification of the electrostatic
269 interactions between bodies so that fewer site-site interactions are
270 required to compute configurational
271 energies.\cite{Ren06,Essex10,Essex11}
272
273 Additionally, because electrons in a molecule are not localized at
274 specific points, the assignment of partial charges to atomic centers
275 is always an approximation. For increased accuracy, atomic sites can
276 also be assigned point multipoles and polarizabilities. Recently,
277 water has been modeled with point multipoles up to octupolar order
278 using the soft sticky dipole-quadrupole-octupole (SSDQO)
279 model.\cite{Ichiye10_1,Ichiye10_2,Ichiye10_3} Atom-centered point
280 multipoles up to quadrupolar order have also been coupled with point
281 polarizabilities in the high-quality AMOEBA and iAMOEBA water
282 models.\cite{Ren:2003uq,Ren:2004kx,Ponder:2010vl,Wang:2013fk} However,
283 truncating point multipoles without smoothing the forces and torques
284 can create energy conservation issues in molecular dynamics
285 simulations.
286
287 In this paper we test a set of real-space methods that were developed
288 for point multipolar interactions. These methods extend the damped
289 shifted force (DSF) and Wolf methods originally developed for
290 charge-charge interactions and generalize them for higher order
291 multipoles. The detailed mathematical development of these methods
292 has been presented in the first paper in this series, while this work
293 covers the testing of energies, forces, torques, and energy
294 conservation properties of the methods in realistic simulation
295 environments. In all cases, the methods are compared with the
296 reference method, a full multipolar Ewald treatment.\cite{Smith82,Smith98}
297
298
299 \section{\label{sec:method}Review of Methods}
300 Any real-space electrostatic method that is suitable for MD
301 simulations should have the electrostatic energy, forces and torques
302 between two sites go smoothly to zero as the distance between the
303 sites, $r_{ab}$ approaches the cutoff radius, $r_c$. Requiring
304 this continuity at the cutoff is essential for energy conservation in
305 MD simulations. The mathematical details of the shifted potential
306 (SP), gradient-shifted-force (GSF) and Taylor shifted-force (TSF)
307 methods have been discussed in detail in the previous paper in this
308 series.\cite{PaperI} Here we briefly review the new methods and
309 describe their essential features.
310
311 \subsection{Taylor-shifted force (TSF)}
312
313 The electrostatic potential energy between point multipoles can be
314 expressed as the product of two multipole operators and a Coulombic
315 kernel,
316 \begin{equation}
317 U_{ab}(r)= M_{a} M_{b} \frac{1}{r} \label{kernel}.
318 \end{equation}
319 where the multipole operator for site $a$, $M_{a}$, is
320 expressed in terms of the point charge, $C_{a}$, dipole, ${\bf D}_{a}$, and quadrupole, $\mathsf{Q}_{a}$, for object
321 $a$, etc.
322
323 The TSF potential for any multipole-multipole interaction can be
324 written
325 \begin{equation}
326 U^{\text{TSF}}= (\text{prefactor}) (\text{derivatives}) f_n(r)
327 \label{generic}
328 \end{equation}
329 where $f_n(r)$ is a shifted kernel that is appropriate for the order
330 of the interaction (see Ref. \onlinecite{PaperI}), with $n=0$ for
331 charge-charge, $n=1$ for charge-dipole, $n=2$ for charge-quadrupole
332 and dipole-dipole, $n=3$ for dipole-quadrupole, and $n=4$ for
333 quadrupole-quadrupole. To ensure smooth convergence of the energy,
334 force, and torques, a Taylor expansion with $n$ terms must be
335 performed at cutoff radius ($r_c$) to obtain $f_n(r)$.
336
337 For multipole-multipole interactions, following this procedure results
338 in separate radial functions for each of the distinct orientational
339 contributions to the potential, and ensures that the forces and
340 torques from each of these contributions will vanish at the cutoff
341 radius. For example, the direct dipole dot product
342 ($\mathbf{D}_{a}
343 \cdot \mathbf{D}_{b}$) is treated differently than the dipole-distance
344 dot products:
345 \begin{equation}
346 U_{D_{a}D_{b}}(r)= -\frac{1}{4\pi \epsilon_0} \left[ \left(
347 \mathbf{D}_{a} \cdot
348 \mathbf{D}_{b} \right) v_{21}(r) +
349 \left( \mathbf{D}_{a} \cdot \hat{\mathbf{r}} \right)
350 \left( \mathbf{D}_{b} \cdot \hat{\mathbf{r}} \right) v_{22}(r) \right]
351 \end{equation}
352
353 For the Taylor shifted (TSF) method with the undamped kernel,
354 $v_{21}(r) = -\frac{1}{r^3} + \frac{3 r}{r_c^4} - \frac{8}{r_c^3} +
355 \frac{6}{r r_c^2}$ and $v_{22}(r) = \frac{3}{r^3} + \frac{3 r}{r_c^4}
356 - \frac{6}{r r_c^2}$. In these functions, one can easily see the
357 connection to unmodified electrostatics as well as the smooth
358 transition to zero in both these functions as $r\rightarrow r_c$. The
359 electrostatic forces and torques acting on the central multipole due
360 to another site within the cutoff sphere are derived from
361 Eq.~\ref{generic}, accounting for the appropriate number of
362 derivatives. Complete energy, force, and torque expressions are
363 presented in the first paper in this series (Reference
364 \onlinecite{PaperI}).
365
366 \subsection{Gradient-shifted force (GSF)}
367
368 A second (and conceptually simpler) method involves shifting the
369 gradient of the raw Coulomb potential for each particular multipole
370 order. For example, the raw dipole-dipole potential energy may be
371 shifted smoothly by finding the gradient for two interacting dipoles
372 which have been projected onto the surface of the cutoff sphere
373 without changing their relative orientation,
374 \begin{equation}
375 U_{D_{a}D_{b}}(r) = U_{D_{a}D_{b}}(r) -
376 U_{D_{a}D_{b}}(r_c)
377 - (r_{ab}-r_c) ~~~\hat{\mathbf{r}}_{ab} \cdot
378 \nabla U_{D_{a}D_{b}}(r_c).
379 \end{equation}
380 Here the lab-frame orientations of the two dipoles, $\mathbf{D}_{a}$ and $\mathbf{D}_{b}$, are retained at the cutoff distance
381 (although the signs are reversed for the dipole that has been
382 projected onto the cutoff sphere). In many ways, this simpler
383 approach is closer in spirit to the original shifted force method, in
384 that it projects a neutralizing multipole (and the resulting forces
385 from this multipole) onto a cutoff sphere. The resulting functional
386 forms for the potentials, forces, and torques turn out to be quite
387 similar in form to the Taylor-shifted approach, although the radial
388 contributions are significantly less perturbed by the gradient-shifted
389 approach than they are in the Taylor-shifted method.
390
391 For the gradient shifted (GSF) method with the undamped kernel,
392 $v_{21}(r) = -\frac{1}{r^3} - \frac{3 r}{r_c^4} + \frac{4}{r_c^3}$ and
393 $v_{22}(r) = \frac{3}{r^3} + \frac{9 r}{r_c^4} - \frac{12}{r_c^3}$.
394 Again, these functions go smoothly to zero as $r\rightarrow r_c$, and
395 because the Taylor expansion retains only one term, they are
396 significantly less perturbed than the TSF functions.
397
398 In general, the gradient shifted potential between a central multipole
399 and any multipolar site inside the cutoff radius is given by,
400 \begin{equation}
401 U^{\text{GSF}} = \sum \left[ U(\mathbf{r}, \mathsf{A}, \mathsf{B}) -
402 U(r_c \hat{\mathbf{r}},\mathsf{A}, \mathsf{B}) - (r-r_c)
403 \hat{\mathbf{r}} \cdot \nabla U(r_c \hat{\mathbf{r}},\mathsf{A}, \mathsf{B}) \right]
404 \label{generic2}
405 \end{equation}
406 where the sum describes a separate force-shifting that is applied to
407 each orientational contribution to the energy. In this expression,
408 $\hat{\mathbf{r}}$ is the unit vector connecting the two multipoles
409 ($a$ and $b$) in space, and $\mathsf{A}$ and $\mathsf{B}$
410 represent the orientations the multipoles.
411
412 The third term converges more rapidly than the first two terms as a
413 function of radius, hence the contribution of the third term is very
414 small for large cutoff radii. The force and torque derived from
415 Eq. \ref{generic2} are consistent with the energy expression and
416 approach zero as $r \rightarrow r_c$. Both the GSF and TSF methods
417 can be considered generalizations of the original DSF method for
418 higher order multipole interactions. GSF and TSF are also identical up
419 to the charge-dipole interaction but generate different expressions in
420 the energy, force and torque for higher order multipole-multipole
421 interactions. Complete energy, force, and torque expressions for the
422 GSF potential are presented in the first paper in this series
423 (Reference~\onlinecite{PaperI}).
424
425
426 \subsection{Shifted potential (SP) }
427 A discontinuous truncation of the electrostatic potential at the
428 cutoff sphere introduces a severe artifact (oscillation in the
429 electrostatic energy) even for molecules with the higher-order
430 multipoles.\cite{PaperI} We have also formulated an extension of the
431 Wolf approach for point multipoles by simply projecting the image
432 multipole onto the surface of the cutoff sphere, and including the
433 interactions with the central multipole and the image. This
434 effectively shifts the total potential to zero at the cutoff radius,
435 \begin{equation}
436 U^{\text{SP}} = \sum \left[ U(\mathbf{r}, \mathsf{A}, \mathsf{B}) -
437 U(r_c \hat{\mathbf{r}},\mathsf{A}, \mathsf{B}) \right]
438 \label{eq:SP}
439 \end{equation}
440 where the sum describes separate potential shifting that is done for
441 each orientational contribution to the energy (e.g. the direct dipole
442 product contribution is shifted {\it separately} from the
443 dipole-distance terms in dipole-dipole interactions). Note that this
444 is not a simple shifting of the total potential at $r_c$. Each radial
445 contribution is shifted separately. One consequence of this is that
446 multipoles that reorient after leaving the cutoff sphere can re-enter
447 the cutoff sphere without perturbing the total energy.
448
449 For the shifted potential (SP) method with the undamped kernel,
450 $v_{21}(r) = -\frac{1}{r^3} + \frac{1}{r_c^3}$ and $v_{22}(r) =
451 \frac{3}{r^3} - \frac{3}{r_c^3}$. The potential energy between a
452 central multipole and other multipolar sites goes smoothly to zero as
453 $r \rightarrow r_c$. However, the force and torque obtained from the
454 shifted potential (SP) are discontinuous at $r_c$. MD simulations
455 will still experience energy drift while operating under the SP
456 potential, but it may be suitable for Monte Carlo approaches where the
457 configurational energy differences are the primary quantity of
458 interest.
459
460 \subsection{The Self Term}
461 In the TSF, GSF, and SP methods, a self-interaction is retained for
462 the central multipole interacting with its own image on the surface of
463 the cutoff sphere. This self interaction is nearly identical with the
464 self-terms that arise in the Ewald sum for multipoles. Complete
465 expressions for the self terms are presented in the first paper in
466 this series (Reference \onlinecite{PaperI}).
467
468
469 \section{\label{sec:methodology}Methodology}
470
471 To understand how the real-space multipole methods behave in computer
472 simulations, it is vital to test against established methods for
473 computing electrostatic interactions in periodic systems, and to
474 evaluate the size and sources of any errors that arise from the
475 real-space cutoffs. In the first paper of this series, we compared
476 the dipolar and quadrupolar energy expressions against analytic
477 expressions for ordered dipolar and quadrupolar
478 arrays.\cite{Sauer,LT,Nagai01081960,Nagai01091963} In this work, we
479 used the multipolar Ewald sum as a reference method for comparing
480 energies, forces, and torques for molecular models that mimic
481 disordered and ordered condensed-phase systems. The parameters used
482 in the test cases are given in table~\ref{tab:pars}.
483
484 \begin{table}
485 \caption{The parameters used in the systems used to evaluate the new
486 real-space methods. The most comprehensive test was a liquid
487 composed of 2000 SSDQ molecules with 48 dissolved ions (24 \ce{Na+} and 24 \ce{Cl-}
488 ions). This test excercises all orders of the multipolar
489 interactions developed in the first paper.\label{tab:pars}}
490 \begin{tabularx}{\textwidth}{r|cc|YYccc|Yccc} \hline
491 & \multicolumn{2}{c|}{LJ parameters} &
492 \multicolumn{5}{c|}{Electrostatic moments} & & & & \\
493 Test system & $\sigma$& $\epsilon$ & $C$ & $D$ &
494 $Q_{xx}$ & $Q_{yy}$ & $Q_{zz}$ & mass & $I_{xx}$ & $I_{yy}$ &
495 $I_{zz}$ \\ \cline{6-8}\cline{10-12}
496 & (\AA) & (kcal/mol) & (e) & (debye) & \multicolumn{3}{c|}{(debye \AA)} & (amu) & \multicolumn{3}{c}{(amu
497 \AA\textsuperscript{2})} \\ \hline
498 Soft Dipolar fluid & 3.051 & 0.152 & & 2.35 & & & & 18.0153 & 1.77&0.6145& 1.155 \\
499 Soft Dipolar solid & 2.837 & 1.0 & & 2.35 & & & & $10^4$ & 17.6 &17.6 & 0 \\
500 Soft Quadrupolar fluid & 3.051 & 0.152 & & & -1&-1&-2.5 & 18.0153 & 1.77&0.6145&1.155 \\
501 Soft Quadrupolar solid & 2.837 & 1.0 & & & -1&-1&-2.5 & $10^4$ & 17.6&17.6&0 \\
502 SSDQ water & 3.051 & 0.152 & & 2.35 & -1.35&0&-0.68 & 18.0153 & 1.77&0.6145&1.155 \\
503 \ce{Na+} & 2.579 & 0.118 & +1& & & & & 22.99 & & &\\
504 \ce{Cl-} & 4.445 & 0.1 & -1& & & & & 35.4527& & & \\ \hline
505 \end{tabularx}
506 \end{table}
507 The systems consist of pure multipolar solids (both dipole and
508 quadrupole), pure multipolar liquids (both dipole and quadrupole), a
509 fluid composed of sites containing both dipoles and quadrupoles
510 simultaneously, and a final test case that includes ions with point
511 charges in addition to the multipolar fluid. The solid-phase
512 parameters were chosen so that the systems can explore some
513 orientational freedom for the multipolar sites, while maintaining
514 relatively strict translational order. The SSDQ model used here is
515 not a particularly accurate water model, but it does test
516 dipole-dipole, dipole-quadrupole, and quadrupole-quadrupole
517 interactions at roughly the same magnitudes. The last test case, SSDQ
518 water with dissolved ions, exercises \textit{all} levels of the
519 multipole-multipole interactions we have derived so far and represents
520 the most complete test of the new methods.
521
522 In the following section, we present results for the total
523 electrostatic energy, as well as the electrostatic contributions to
524 the force and torque on each molecule. These quantities have been
525 computed using the SP, TSF, and GSF methods, as well as a hard cutoff,
526 and have been compared with the values obtained from the multipolar
527 Ewald sum. In Monte Carlo (MC) simulations, the energy differences
528 between two configurations is the primary quantity that governs how
529 the simulation proceeds. These differences are the most important
530 indicators of the reliability of a method even if the absolute
531 energies are not exact. For each of the multipolar systems listed
532 above, we have compared the change in electrostatic potential energy
533 ($\Delta E$) between 250 statistically-independent configurations. In
534 molecular dynamics (MD) simulations, the forces and torques govern the
535 behavior of the simulation, so we also compute the electrostatic
536 contributions to the forces and torques.
537
538 \subsection{Implementation}
539 The real-space methods developed in the first paper in this series
540 have been implemented in our group's open source molecular simulation
541 program, OpenMD,\cite{Meineke05,openmd} which was used for all calculations in
542 this work. The complementary error function can be a relatively slow
543 function on some processors, so all of the radial functions are
544 precomputed on a fine grid and are spline-interpolated to provide
545 values when required.
546
547 Using the same simulation code, we compare to a multipolar Ewald sum
548 with a reciprocal space cutoff, $k_\mathrm{max} = 7$. Our version of
549 the Ewald sum is a re-implementation of the algorithm originally
550 proposed by Smith that does not use the particle mesh or smoothing
551 approximations.\cite{Smith82,Smith98} This implementation was tested
552 extensively against the analytic energy constants for the multipolar
553 lattices that are discussed in reference \onlinecite{PaperI}. In all
554 cases discussed below, the quantities being compared are the
555 electrostatic contributions to energies, force, and torques. All
556 other contributions to these quantities (i.e. from Lennard-Jones
557 interactions) are removed prior to the comparisons.
558
559 The convergence parameter ($\alpha$) also plays a role in the balance
560 of the real-space and reciprocal-space portions of the Ewald
561 calculation. Typical molecular mechanics packages set this to a value
562 that depends on the cutoff radius and a tolerance (typically less than
563 $1 \times 10^{-4}$ kcal/mol). Smaller tolerances are typically
564 associated with increasing accuracy at the expense of computational
565 time spent on the reciprocal-space portion of the
566 summation.\cite{Perram88,Essmann:1995pb} A default tolerance of $1 \times
567 10^{-8}$ kcal/mol was used in all Ewald calculations, resulting in
568 Ewald coefficient 0.3119 \AA$^{-1}$ for a cutoff radius of 12 \AA.
569
570 The real-space models have self-interactions that provide
571 contributions to the energies only. Although the self interaction is
572 a rapid calculation, we note that in systems with fluctuating charges
573 or point polarizabilities, the self-term is not static and must be
574 recomputed at each time step.
575
576 \subsection{Model systems}
577 To sample independent configurations of the multipolar crystals, body
578 centered cubic (bcc) crystals, which exhibit the minimum energy
579 structures for point dipoles, were generated using 3,456 molecules.
580 The multipoles were translationally locked in their respective crystal
581 sites for equilibration at a relatively low temperature (50K) so that
582 dipoles or quadrupoles could freely explore all accessible
583 orientations. The translational constraints were then removed, the
584 systems were re-equilibrated, and the crystals were simulated for an
585 additional 10 ps in the microcanonical (NVE) ensemble with an average
586 temperature of 50 K. The balance between moments of inertia and
587 particle mass were chosen to allow orientational sampling without
588 significant translational motion. Configurations were sampled at
589 equal time intervals in order to compare configurational energy
590 differences. The crystals were simulated far from the melting point
591 in order to avoid translational deformation away of the ideal lattice
592 geometry.
593
594 For dipolar, quadrupolar, and mixed-multipole \textit{liquid}
595 simulations, each system was created with 2,048 randomly-oriented
596 molecules. These were equilibrated at a temperature of 300K for 1 ns.
597 Each system was then simulated for 1 ns in the microcanonical (NVE)
598 ensemble. We collected 250 different configurations at equal time
599 intervals. For the liquid system that included ionic species, we
600 converted 48 randomly-distributed molecules into 24 \ce{Na+} and 24
601 \ce{Cl-} ions and re-equilibrated. After equilibration, the system was
602 run under the same conditions for 1 ns. A total of 250 configurations
603 were collected. In the following comparisons of energies, forces, and
604 torques, the Lennard-Jones potentials were turned off and only the
605 purely electrostatic quantities were compared with the same values
606 obtained via the Ewald sum.
607
608 \subsection{Accuracy of Energy Differences, Forces and Torques}
609 The pairwise summation techniques (outlined above) were evaluated for
610 use in MC simulations by studying the energy differences between
611 different configurations. We took the Ewald-computed energy
612 difference between two conformations to be the correct behavior. An
613 ideal performance by one of the new methods would reproduce these
614 energy differences exactly. The configurational energies being used
615 here contain only contributions from electrostatic interactions.
616 Lennard-Jones interactions were omitted from the comparison as they
617 should be identical for all methods.
618
619 Since none of the real-space methods provide exact energy differences,
620 we used least square regressions analysis for the six different
621 molecular systems to compare $\Delta E$ from Hard, SP, GSF, and TSF
622 with the multipolar Ewald reference method. Unitary results for both
623 the correlation (slope) and correlation coefficient for these
624 regressions indicate perfect agreement between the real-space method
625 and the multipolar Ewald sum.
626
627 Molecular systems were run long enough to explore independent
628 configurations and 250 configurations were recorded for comparison.
629 Each system provided 31,125 energy differences for a total of 186,750
630 data points. Similarly, the magnitudes of the forces and torques have
631 also been compared using least squares regression analysis. In the
632 forces and torques comparison, the magnitudes of the forces acting in
633 each molecule for each configuration were evaluated. For example, our
634 dipolar liquid simulation contains 2048 molecules and there are 250
635 different configurations for each system resulting in 3,072,000 data
636 points for comparison of forces and torques.
637
638 \subsection{Analysis of vector quantities}
639 Getting the magnitudes of the force and torque vectors correct is only
640 part of the issue for carrying out accurate molecular dynamics
641 simulations. Because the real space methods reweight the different
642 orientational contributions to the energies, it is also important to
643 understand how the methods impact the \textit{directionality} of the
644 force and torque vectors. Fisher developed a probablity density
645 function to analyse directional data sets,
646 \begin{equation}
647 p_f(\theta) = \frac{\kappa}{2 \sinh\kappa}\sin\theta e^{\kappa \cos\theta}
648 \label{eq:pdf}
649 \end{equation}
650 where $\kappa$ measures directional dispersion of the data around the
651 mean direction.\cite{fisher53} This quantity $(\kappa)$ can be
652 estimated as a reciprocal of the circular variance.\cite{Allen91} To
653 quantify the directional error, forces obtained from the Ewald sum
654 were taken as the mean (or correct) direction and the angle between
655 the forces obtained via the Ewald sum and the real-space methods were
656 evaluated,
657 \begin{equation}
658 \cos\theta_i = \frac{\vec{f}_i^\mathrm{~Ewald} \cdot
659 \vec{f}_i^\mathrm{~GSF}}{\left|\vec{f}_i^\mathrm{~Ewald}\right| \left|\vec{f}_i^\mathrm{~GSF}\right|}
660 \end{equation}
661 The total angular displacement of the vectors was calculated as,
662 \begin{equation}
663 R = \sqrt{\left(\sum\limits_{i=1}^N \cos\theta_i\right)^2 + \left(\sum\limits_{i=1}^N \sin\theta_i\right)^2}
664 \label{eq:displacement}
665 \end{equation}
666 where $N$ is number of force vectors. The circular variance is
667 defined as
668 \begin{equation}
669 \mathrm{Var}(\theta) \approx 1/\kappa = 1 - R/N
670 \end{equation}
671 The circular variance takes on values between from 0 to 1, with 0
672 indicating a perfect directional match between the Ewald force vectors
673 and the real-space forces. Lower values of $\mathrm{Var}(\theta)$
674 correspond to higher values of $\kappa$, which indicates tighter
675 clustering of the real-space force vectors around the Ewald forces.
676
677 A similar analysis was carried out for the electrostatic contribution
678 to the molecular torques as well as forces.
679
680 \subsection{Energy conservation}
681 To test conservation the energy for the methods, the mixed molecular
682 system of 2000 SSDQ water molecules with 24 \ce{Na+} and 24 \ce{Cl-}
683 ions was run for 1 ns in the microcanonical ensemble at an average
684 temperature of 300K. Each of the different electrostatic methods
685 (Ewald, Hard, SP, GSF, and TSF) was tested for a range of different
686 damping values. The molecular system was started with same initial
687 positions and velocities for all cutoff methods. The energy drift
688 ($\delta E_1$) and standard deviation of the energy about the slope
689 ($\delta E_0$) were evaluated from the total energy of the system as a
690 function of time. Although both measures are valuable at
691 investigating new methods for molecular dynamics, a useful interaction
692 model must allow for long simulation times with minimal energy drift.
693
694 \section{\label{sec:result}RESULTS}
695 \subsection{Configurational energy differences}
696
697 \begin{figure}
698 \centering
699 \includegraphics[width=0.85\linewidth]{energyPlot_slopeCorrelation_combined.eps}
700 \caption{Statistical analysis of the quality of configurational
701 energy differences for the real-space electrostatic methods
702 compared with the reference Ewald sum. Results with a value equal
703 to 1 (dashed line) indicate $\Delta E$ values indistinguishable
704 from those obtained using the multipolar Ewald sum. Different
705 values of the cutoff radius are indicated with different symbols
706 (9\AA\ = circles, 12\AA\ = squares, and 15\AA\ = inverted
707 triangles).\label{fig:slopeCorr_energy}}
708 \end{figure}
709
710 The combined correlation coefficient and slope for all six systems is
711 shown in Figure ~\ref{fig:slopeCorr_energy}. Most of the methods
712 reproduce the Ewald configurational energy differences with remarkable
713 fidelity. Undamped hard cutoffs introduce a significant amount of
714 random scatter in the energy differences which is apparent in the
715 reduced value of the correlation coefficient for this method. This
716 can be easily understood as configurations which exhibit small
717 traversals of a few dipoles or quadrupoles out of the cutoff sphere
718 will see large energy jumps when hard cutoffs are used. The
719 orientations of the multipoles (particularly in the ordered crystals)
720 mean that these energy jumps can go in either direction, producing a
721 significant amount of random scatter, but no systematic error.
722
723 The TSF method produces energy differences that are highly correlated
724 with the Ewald results, but it also introduces a significant
725 systematic bias in the values of the energies, particularly for
726 smaller cutoff values. The TSF method alters the distance dependence
727 of different orientational contributions to the energy in a
728 non-uniform way, so the size of the cutoff sphere can have a large
729 effect, particularly for the crystalline systems.
730
731 Both the SP and GSF methods appear to reproduce the Ewald results with
732 excellent fidelity, particularly for moderate damping ($\alpha =
733 0.1-0.2$\AA$^{-1}$) and with a commonly-used cutoff value ($r_c =
734 12$\AA). With the exception of the undamped hard cutoff, and the TSF
735 method with short cutoffs, all of the methods would be appropriate for
736 use in Monte Carlo simulations.
737
738 \subsection{Magnitude of the force and torque vectors}
739
740 The comparisons of the magnitudes of the forces and torques for the
741 data accumulated from all six systems are shown in Figures
742 ~\ref{fig:slopeCorr_force} and \ref{fig:slopeCorr_torque}. The
743 correlation and slope for the forces agree well with the Ewald sum
744 even for the hard cutoffs.
745
746 For systems of molecules with only multipolar interactions, the pair
747 energy contributions are quite short ranged. Moreover, the force
748 decays more rapidly than the electrostatic energy, hence the hard
749 cutoff method can also produce reasonable agreement for this quantity.
750 Although the pure cutoff gives reasonably good electrostatic forces
751 for pairs of molecules included within each other's cutoff spheres,
752 the discontinuity in the force at the cutoff radius can potentially
753 cause energy conservation problems as molecules enter and leave the
754 cutoff spheres. This is discussed in detail in section
755 \ref{sec:conservation}.
756
757 The two shifted-force methods (GSF and TSF) exhibit a small amount of
758 systematic variation and scatter compared with the Ewald forces. The
759 shifted-force models intentionally perturb the forces between pairs of
760 molecules inside each other's cutoff spheres in order to correct the
761 energy conservation issues, and this perturbation is evident in the
762 statistics accumulated for the molecular forces. The GSF
763 perturbations are minimal, particularly for moderate damping and
764 commonly-used cutoff values ($r_c = 12$\AA). The TSF method shows
765 reasonable agreement in the correlation coefficient but again the
766 systematic error in the forces is concerning if replication of Ewald
767 forces is desired.
768
769 It is important to note that the forces and torques from the SP and
770 the Hard cutoffs are not identical. The SP method shifts each
771 orientational contribution separately (e.g. the dipole-dipole dot
772 product is shifted by a different function than the dipole-distance
773 products), while the hard cutoff contains no orientation-dependent
774 shifting. The forces and torques for these methods therefore diverge
775 for multipoles even though the forces for point charges are identical.
776
777 \begin{figure}
778 \centering
779 \includegraphics[width=0.6\linewidth]{forcePlot_slopeCorrelation_combined.eps}
780 \caption{Statistical analysis of the quality of the force vector
781 magnitudes for the real-space electrostatic methods compared with
782 the reference Ewald sum. Results with a value equal to 1 (dashed
783 line) indicate force magnitude values indistinguishable from those
784 obtained using the multipolar Ewald sum. Different values of the
785 cutoff radius are indicated with different symbols (9\AA\ =
786 circles, 12\AA\ = squares, and 15\AA\ = inverted
787 triangles).\label{fig:slopeCorr_force}}
788 \end{figure}
789
790
791 \begin{figure}
792 \centering
793 \includegraphics[width=0.6\linewidth]{torquePlot_slopeCorrelation_combined.eps}
794 \caption{Statistical analysis of the quality of the torque vector
795 magnitudes for the real-space electrostatic methods compared with
796 the reference Ewald sum. Results with a value equal to 1 (dashed
797 line) indicate force magnitude values indistinguishable from those
798 obtained using the multipolar Ewald sum. Different values of the
799 cutoff radius are indicated with different symbols (9\AA\ =
800 circles, 12\AA\ = squares, and 15\AA\ = inverted
801 triangles).\label{fig:slopeCorr_torque}}
802 \end{figure}
803
804 The torques (Fig. \ref{fig:slopeCorr_torque}) appear to be
805 significantly influenced by the choice of real-space method. The
806 torque expressions have the same distance dependence as the energies,
807 which are naturally longer-ranged expressions than the inter-site
808 forces. Torques are also quite sensitive to orientations of
809 neighboring molecules, even those that are near the cutoff distance.
810
811 The results shows that the torque from the hard cutoff method
812 reproduces the torques in quite good agreement with the Ewald sum.
813 The other real-space methods can cause some deviations, but excellent
814 agreement with the Ewald sum torques is recovered at moderate values
815 of the damping coefficient ($\alpha = 0.1-0.2$\AA$^{-1}$) and cutoff
816 radius ($r_c \ge 12$\AA). The TSF method exhibits only fair agreement
817 in the slope when compared with the Ewald torques even for larger
818 cutoff radii. It appears that the severity of the perturbations in
819 the TSF method are most in evidence for the torques.
820
821 \subsection{Directionality of the force and torque vectors}
822
823 The accurate evaluation of force and torque directions is just as
824 important for molecular dynamics simulations as the magnitudes of
825 these quantities. Force and torque vectors for all six systems were
826 analyzed using Fisher statistics, and the quality of the vector
827 directionality is shown in terms of circular variance
828 ($\mathrm{Var}(\theta)$) in figure
829 \ref{fig:slopeCorr_circularVariance}. The force and torque vectors
830 from the new real-space methods exhibit nearly-ideal Fisher probability
831 distributions (Eq.~\ref{eq:pdf}). Both the hard and SP cutoff methods
832 exhibit the best vectorial agreement with the Ewald sum. The force and
833 torque vectors from GSF method also show good agreement with the Ewald
834 method, which can also be systematically improved by using moderate
835 damping and a reasonable cutoff radius. For $\alpha = 0.2$ and $r_c =
836 12$\AA, we observe $\mathrm{Var}(\theta) = 0.00206$, which corresponds
837 to a distribution with 95\% of force vectors within $6.37^\circ$ of
838 the corresponding Ewald forces. The TSF method produces the poorest
839 agreement with the Ewald force directions.
840
841 Torques are again more perturbed than the forces by the new real-space
842 methods, but even here the variance is reasonably small. For the same
843 method (GSF) with the same parameters ($\alpha = 0.2, r_c = 12$\AA),
844 the circular variance was 0.01415, corresponds to a distribution which
845 has 95\% of torque vectors are within $16.75^\circ$ of the Ewald
846 results. Again, the direction of the force and torque vectors can be
847 systematically improved by varying $\alpha$ and $r_c$.
848
849 \begin{figure}
850 \centering
851 \includegraphics[width=0.65\linewidth]{Variance_forceNtorque_modified.eps}
852 \caption{The circular variance of the direction of the force and
853 torque vectors obtained from the real-space methods around the
854 reference Ewald vectors. A variance equal to 0 (dashed line)
855 indicates direction of the force or torque vectors are
856 indistinguishable from those obtained from the Ewald sum. Here
857 different symbols represent different values of the cutoff radius
858 (9 \AA\ = circle, 12 \AA\ = square, 15 \AA\ = inverted triangle)\label{fig:slopeCorr_circularVariance}}
859 \end{figure}
860
861 \subsection{Energy conservation\label{sec:conservation}}
862
863 We have tested the conservation of energy one can expect to see with
864 the new real-space methods using the SSDQ water model with a small
865 fraction of solvated ions. This is a test system which exercises all
866 orders of multipole-multipole interactions derived in the first paper
867 in this series and provides the most comprehensive test of the new
868 methods. A liquid-phase system was created with 2000 water molecules
869 and 48 dissolved ions at a density of 0.98 g cm$^{-3}$ and a
870 temperature of 300K. After equilibration in the canonical (NVT)
871 ensemble using a Nos\'e-Hoover thermostat, this liquid-phase system
872 was run for 1 ns in the microcanonical (NVE) ensemble under the Ewald,
873 Hard, SP, GSF, and TSF methods with a cutoff radius of 12\AA. The
874 value of the damping coefficient was also varied from the undamped
875 case ($\alpha = 0$) to a heavily damped case ($\alpha = 0.3$
876 \AA$^{-1}$) for all of the real space methods. A sample was also run
877 using the multipolar Ewald sum with the same real-space cutoff.
878
879 In figure~\ref{fig:energyDrift} we show the both the linear drift in
880 energy over time, $\delta E_1$, and the standard deviation of energy
881 fluctuations around this drift $\delta E_0$. Both of the
882 shifted-force methods (GSF and TSF) provide excellent energy
883 conservation (drift less than $10^{-5}$ kcal / mol / ns / particle),
884 while the hard cutoff is essentially unusable for molecular dynamics.
885 SP provides some benefit over the hard cutoff because the energetic
886 jumps that happen as particles leave and enter the cutoff sphere are
887 somewhat reduced, but like the Wolf method for charges, the SP method
888 would not be as useful for molecular dynamics as either of the
889 shifted-force methods.
890
891 We note that for all tested values of the cutoff radius, the new
892 real-space methods can provide better energy conservation behavior
893 than the multipolar Ewald sum, even when relatively large $k$-space
894 cutoff values are utilized.
895
896 \begin{figure}
897 \centering
898 \includegraphics[width=\textwidth]{newDrift_12.eps}
899 \caption{Energy conservation of the real-space methods for the SSDQ
900 water/ion system. $\delta \mathrm{E}_1$ is the linear drift in
901 energy over time (in kcal/mol/particle/ns) and $\delta
902 \mathrm{E}_0$ is the standard deviation of energy fluctuations
903 around this drift (in kcal/mol/particle). Points that appear in
904 the green region at the bottom exhibit better energy conservation
905 than would be obtained using common parameters for Ewald-based
906 electrostatics.\label{fig:energyDrift}}
907 \end{figure}
908
909 \subsection{Reproduction of Structural \& Dynamical Features\label{sec:structure}}
910 The most important test of the modified interaction potentials is the
911 fidelity with which they can reproduce structural features and
912 dynamical properties in a liquid. One commonly-utilized measure of
913 structural ordering is the pair distribution function, $g(r)$, which
914 measures local density deviations in relation to the bulk density. In
915 the electrostatic approaches studied here, the short-range repulsion
916 from the Lennard-Jones potential is identical for the various
917 electrostatic methods, and since short range repulsion determines much
918 of the local liquid ordering, one would not expect to see many
919 differences in $g(r)$. Indeed, the pair distributions are essentially
920 identical for all of the electrostatic methods studied (for each of
921 the different systems under investigation). An example of this
922 agreement for the SSDQ water/ion system is shown in
923 Fig. \ref{fig:gofr}.
924
925 \begin{figure}
926 \centering
927 \includegraphics[width=\textwidth]{gofr_ssdqc.eps}
928 \caption{The pair distribution functions, $g(r)$, for the SSDQ
929 water/ion system obtained using the different real-space methods are
930 essentially identical with the result from the Ewald
931 treatment.\label{fig:gofr}}
932 \end{figure}
933
934 There is a minor overstructuring of the first solvation shell when
935 using TSF or when overdamping with any of the real-space methods.
936 With moderate damping, GSF and SP produce pair distributions that are
937 identical (within numerical noise) to their Ewald counterparts. The
938 degree of overstructuring can be measured most easily using the
939 coordination number,
940 \begin{equation}
941 n_C = 4\pi\rho \int_{0}^{a}r^2\text{g}(r)dr,
942 \end{equation}
943 where $\rho$ is the number density of the site-site pair interactions,
944 $a$ and is the radial location of the minima following the first peak
945 in $g(r)$ ($a = 4.2$ \AA for the SSDQ water/ion system). The
946 coordination number is shown as a function of the damping coefficient
947 for all of the real space methods in Fig. \ref{fig:Props}.
948
949 A more demanding test of modified electrostatics is the average value
950 of the electrostatic energy $\langle U_\mathrm{elect} \rangle / N$
951 which is obtained by sampling the liquid-state configurations
952 experienced by a liquid evolving entirely under the influence of each
953 of the methods. In fig \ref{fig:Props} we demonstrate how $\langle
954 U_\mathrm{elect} \rangle / N$ varies with the damping parameter,
955 $\alpha$, for each of the methods.
956
957 As in the crystals studied in the first paper, damping is important
958 for converging the mean electrostatic energy values, particularly for
959 the two shifted force methods (GSF and TSF). A value of $\alpha
960 \approx 0.2$ \AA$^{-1}$ is sufficient to converge the SP and GSF
961 energies with a cutoff of 12 \AA, while shorter cutoffs require more
962 dramatic damping ($\alpha \approx 0.28$ \AA$^{-1}$ for $r_c = 9$ \AA).
963 Overdamping the real-space electrostatic methods occurs with $\alpha >
964 0.3$, causing the estimate of the electrostatic energy to drop below
965 the Ewald results.
966
967 These ``optimal'' values of the damping coefficient are slightly
968 larger than what were observed for DSF electrostatics for purely
969 point-charge systems, although the range $\alpha= 0.175 \rightarrow
970 0.225$ \AA$^{-1}$ for $r_c = 12$\AA\ appears to be an excellent
971 compromise for mixed charge/multipolar systems.
972
973 To test the fidelity of the electrostatic methods at reproducing
974 \textit{dynamics} in a multipolar liquid, it is also useful to look at
975 transport properties, particularly the diffusion constant,
976 \begin{equation}
977 D = \lim_{t \rightarrow \infty} \frac{1}{6 t} \langle \left|
978 \mathbf{r}(t) -\mathbf{r}(0) \right|^2 \rangle
979 \label{eq:diff}
980 \end{equation}
981 which measures long-time behavior and is sensitive to the forces on
982 the multipoles. The self-diffusion constants (D) were calculated from
983 linear fits to the long-time portion of the mean square displacement,
984 $\langle r^{2}(t) \rangle$.\cite{Allen87} In fig. \ref{fig:Props} we
985 demonstrate how the diffusion constant depends on the choice of
986 real-space methods and the damping coefficient. Both the SP and GSF
987 methods can obtain excellent agreement with Ewald again using moderate
988 damping.
989
990 In addition to translational diffusion, orientational relaxation times
991 were calculated for comparisons with the Ewald simulations and with
992 experiments. These values were determined from the same 1~ns
993 microcanonical trajectories used for translational diffusion by
994 calculating the orientational time correlation function,
995 \begin{equation}
996 C_l^\gamma(t) = \left\langle P_l\left[\hat{\mathbf{A}}_\gamma(t)
997 \cdot\hat{\mathbf{A}}_\gamma(0)\right]\right\rangle,
998 \label{eq:OrientCorr}
999 \end{equation}
1000 where $P_l$ is the Legendre polynomial of order $l$ and
1001 $\hat{\mathbf{A}}_\gamma$ is the unit vector for body axis $\gamma$.
1002 The reference frame used for our sample dipolar systems has the
1003 $z$-axis running along the dipoles, and for the SSDQ water model, the
1004 $y$-axis connects the two implied hydrogen atom positions. From the
1005 orientation autocorrelation functions, we can obtain time constants
1006 for rotational relaxation either by fitting an exponential function or
1007 by integrating the entire correlation function. In a good water
1008 model, these decay times would be comparable to water orientational
1009 relaxation times from nuclear magnetic resonance (NMR). The relaxation
1010 constant obtained from $C_2^y(t)$ is normally of experimental interest
1011 because it describes the relaxation of the principle axis connecting
1012 the hydrogen atoms. Thus, $C_2^y(t)$ can be compared to the
1013 intermolecular portion of the dipole-dipole relaxation from a proton
1014 NMR signal and should provide an estimate of the NMR relaxation time
1015 constant.\cite{Impey82}
1016
1017 Results for the diffusion constants and orientational relaxation times
1018 are shown in figure \ref{fig:Props}. From this data, it is apparent
1019 that the values for both $D$ and $\tau_2$ using the Ewald sum are
1020 reproduced with reasonable fidelity by the GSF method.
1021
1022 \begin{figure}
1023 \caption{Comparison of the structural and dynamic properties for the
1024 combined multipolar liquid (SSDQ water + ions) for all of the
1025 real-space methods with $r_c = 12$\AA. Electrostatic energies,
1026 $\langle U_\mathrm{elect} \rangle / N$ (in kcal / mol),
1027 coordination numbers, $n_C$, diffusion constants (in cm$^2$
1028 s$^{-1}$), and rotational correlation times (in fs) all show
1029 excellent agreement with Ewald results for damping coefficients in
1030 the range $\alpha= 0.175 \rightarrow 0.225$
1031 \AA$^{-1}$. \label{fig:Props}}
1032 \includegraphics[width=\textwidth]{properties.eps}
1033 \end{figure}
1034
1035
1036 \section{CONCLUSION}
1037 In the first paper in this series, we generalized the
1038 charge-neutralized electrostatic energy originally developed by Wolf
1039 \textit{et al.}\cite{Wolf:1999dn} to multipole-multipole interactions
1040 up to quadrupolar order. The SP method is essentially a
1041 multipole-capable version of the Wolf model. The SP method for
1042 multipoles provides excellent agreement with Ewald-derived energies,
1043 forces and torques, and is suitable for Monte Carlo simulations,
1044 although the forces and torques retain discontinuities at the cutoff
1045 distance that prevents its use in molecular dynamics.
1046
1047 We also developed two natural extensions of the damped shifted-force
1048 (DSF) model originally proposed by Zahn {\it et al.} and extended by
1049 Fennel and Gezelter.\cite{Zahn:2002hc,Fennell:2006lq} The GSF and TSF
1050 approaches provide smooth truncation of energies, forces, and torques
1051 at the real-space cutoff, and both converge to DSF electrostatics for
1052 point-charge interactions. The TSF model is based on a high-order
1053 truncated Taylor expansion which can be relatively perturbative inside
1054 the cutoff sphere. The GSF model takes the gradient from an images of
1055 the interacting multipole that has been projected onto the cutoff
1056 sphere to derive shifted force and torque expressions, and is a
1057 significantly more gentle approach.
1058
1059 The GSF method produced quantitative agreement with Ewald energy,
1060 force, and torques. It also performs well in conserving energy in MD
1061 simulations. The Taylor-shifted (TSF) model provides smooth dynamics,
1062 but these take place on a potential energy surface that is
1063 significantly perturbed from Ewald-based electrostatics. Because it
1064 performs relatively poorly compared with GSF, it may seem odd that
1065 that the TSF model was included in this work. However, the functional
1066 forms derived for the SP and GSF methods depend on the separation of
1067 orientational contributions that were made visible by the Taylor
1068 series of the electrostatic kernel at the cutoff radius. The TSF
1069 method also has the unique property that a large number of derivatives
1070 can be made to vanish at the cutoff radius. This property has proven
1071 useful in past treatments of the corrections to the fluctuation
1072 formula for dielectric constants.\cite{Izvekov:2008wo}
1073
1074 Reproduction of both structural and dynamical features in the liquid
1075 systems is remarkably good for both the SP and GSF models. Pair
1076 distribution functions are essentially equivalent to the same
1077 functions produced using Ewald-based electrostatics, and with moderate
1078 damping, a structural feature that directly probes the electrostatic
1079 interaction (e.g. the mean electrostatic potential energy) can also be
1080 made quantitative. Dynamical features are sensitive probes of the
1081 forces and torques produced by these methods, and even though the
1082 smooth behavior of forces is produced by perturbing the overall
1083 potential, the diffusion constants and orientational correlation times
1084 are quite close to the Ewald-based results.
1085
1086 The only cases we have found where the new GSF and SP real-space
1087 methods can be problematic are those which retain a bulk dipole moment
1088 at large distances (e.g. the $Z_1$ dipolar lattice). In ferroelectric
1089 materials, uniform weighting of the orientational contributions can be
1090 important for converging the total energy. In these cases, the
1091 damping function which causes the non-uniform weighting can be
1092 replaced by the bare electrostatic kernel, and the energies return to
1093 the expected converged values.
1094
1095 Based on the results of this work, we can conclude that the GSF method
1096 is a suitable and efficient replacement for the Ewald sum for
1097 evaluating electrostatic interactions in modern MD simulations, and
1098 the SP meethod would be an excellent choice for Monte Carlo
1099 simulations where smooth forces and energy conservation are not
1100 important. Both the SP and GSF methods retain excellent fidelity to
1101 the Ewald energies, forces and torques. Additionally, the energy
1102 drift and fluctuations from the GSF electrostatics are significantly
1103 better than a multipolar Ewald sum for finite-sized reciprocal spaces.
1104
1105 As in all purely pairwise cutoff methods, the SP, GSF and TSF methods
1106 are expected to scale approximately {\it linearly} with system size,
1107 and are easily parallelizable. This should result in substantial
1108 reductions in the computational cost of performing large simulations.
1109 With the proper use of pre-computation and spline interpolation of the
1110 radial functions, the real-space methods are essentially the same cost
1111 as a simple real-space cutoff. They require no Fourier transforms or
1112 $k$-space sums, and guarantee the smooth handling of energies, forces,
1113 and torques as multipoles cross the real-space cutoff boundary.
1114
1115 We are not suggesting that there is any flaw with the Ewald sum; in
1116 fact, it is the standard by which the SP, GSF, and TSF methods have
1117 been judged in this work. However, these results provide evidence
1118 that in the typical simulations performed today, the Ewald summation
1119 may no longer be required to obtain the level of accuracy most
1120 researchers have come to expect.
1121
1122 \begin{acknowledgments}
1123 JDG acknowledges helpful discussions with Christopher
1124 Fennell. Support for this project was provided by the National
1125 Science Foundation under grant CHE-1362211. Computational time was
1126 provided by the Center for Research Computing (CRC) at the
1127 University of Notre Dame.
1128 \end{acknowledgments}
1129
1130 %\bibliographystyle{aip}
1131 \newpage
1132 \bibliography{references}
1133 \end{document}
1134
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