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1 mlamichh 4114 %% This BibTeX bibliography file was created using BibDesk.
2     %% http://bibdesk.sourceforge.net/
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5     %% Created for Dan Gezelter at 2013-12-28 12:32:12 -0500
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9    
10    
11     @string{cpl = {Chem. Phys. Lett.}}
12    
13     @string{jctc = {J. Chem. Theory Comput.}}
14    
15     @string{jpcb = {J. Phys. Chem. B}}
16    
17     @string{jpcc = {J. Phys. Chem. C}}
18    
19     @string{mp = {Mol. Phys.}}
20    
21     @article{Wolf99,
22     author = "Wolf, D. and Keblinski, P. and Phillpot, S. R. and Eggebrecht, J.",
23     title = "Exact method for the simulation of Coulombic systems by spherically truncated, pairwise r−1 summation",
24     journal = "The Journal of Chemical Physics",
25     year = "1999",
26     volume = "110",
27     number = "17",
28     eid = ,
29     pages = "8254-8282",
30     url = "http://scitation.aip.org/content/aip/journal/jcp/110/17/10.1063/1.478738",
31     doi = "http://dx.doi.org/10.1063/1.478738"
32     }
33     @article{Woodcock86,
34     author = "Clarke, J. H. R. and Smith, W. and Woodcock, L. V.",
35     title = "Short range effective potentials for ionic fluids",
36     journal = "The Journal of Chemical Physics",
37     year = "1986",
38     volume = "84",
39     number = "4",
40     eid = ,
41     pages = "2290-2294",
42     url = "http://scitation.aip.org/content/aip/journal/jcp/84/4/10.1063/1.450391",
43     doi = "http://dx.doi.org/10.1063/1.450391"
44     }
45     @article{Woodcock75,
46     title={Advances in molten salt chemistry},
47     author={Woodcock, LV},
48     journal={Vol. 3Plenum, New York},
49     pages={1},
50     year={1975}
51     }
52     @article{Takada93,
53     title={Efficient calculations of Coulombic interactions in biomolecular simulations with periodic boundary conditions},
54     author={Shimada, Jiro and Kaneko, Hiroki and Takada, Toshikazu},
55     journal={Journal of computational chemistry},
56     volume={14},
57     number={7},
58     pages={867--878},
59     year={1993},
60     publisher={Wiley Online Library}
61     }
62     @article{Parry75,
63     title={The electrostatic potential in the surface region of an ionic crystal},
64     author={Parry, DE},
65     journal={Surface Science},
66     volume={49},
67     number={2},
68     pages={433--440},
69     year={1975},
70     publisher={Elsevier}
71     }
72     @article{Gunsteren94,
73     title={A comparison of particle-particle, particle-mesh and Ewald methods for calculating electrostatic interactions in periodic molecular systems},
74     author={Luty, Brock A and Davis, Malcolm E and Tironi, Ilario G and Van Gunsteren, Wilfred F},
75     journal={Molecular Simulation},
76     volume={14},
77     number={1},
78     pages={11--20},
79     year={1994},
80     publisher={Taylor \& Francis}
81     }
82     @article{Gunsteren95,
83     title={Lattice-sum methods for calculating electrostatic interactions in molecular simulations},
84     author={Luty, Brock A and Tironi, Ilario G and van Gunsteren, Wilfred F},
85     journal={The Journal of chemical physics},
86     volume={103},
87     number={8},
88     pages={3014--3021},
89     year={1995},
90     publisher={AIP Publishing}
91     }
92     @article{Pedersen93,
93     author = "Darden, Tom and York, Darrin and Pedersen, Lee",
94     title = "Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems",
95     journal = "The Journal of Chemical Physics",
96     year = "1993",
97     volume = "98",
98     number = "12",
99     eid = ,
100     pages = "10089-10092",
101     url = "http://scitation.aip.org/content/aip/journal/jcp/98/12/10.1063/1.464397",
102     doi = "http://dx.doi.org/10.1063/1.464397"
103     }
104     @article{Pedersen95,
105     author = "Essmann, Ulrich and Perera, Lalith and Berkowitz, Max L. and Darden, Tom and Lee, Hsing and Pedersen, Lee G.",
106     title = "A smooth particle mesh Ewald method",
107     journal = "The Journal of Chemical Physics",
108     year = "1995",
109     volume = "103",
110     number = "19",
111     eid = ,
112     pages = "8577-8593",
113     url = "http://scitation.aip.org/content/aip/journal/jcp/103/19/10.1063/1.470117",
114     doi = "http://dx.doi.org/10.1063/1.470117"
115     }
116     @article{Gezelter06,
117     author = "Fennell, Christopher J. and Gezelter, J. Daniel",
118     title = "Is the Ewald summation still necessary? Pairwise alternatives to the accepted standard for long-range electrostatics",
119     journal = "The Journal of Chemical Physics",
120     year = "2006",
121     volume = "124",
122     number = "23",
123     eid = 234104,
124     pages = "-",
125     url = "http://scitation.aip.org/content/aip/journal/jcp/124/23/10.1063/1.2206581",
126     doi = "http://dx.doi.org/10.1063/1.2206581"
127     }
128    
129     @article{Parry76,
130     title = "Errata ",
131     journal = "Surface Science ",
132     volume = "54",
133     number = "1",
134     pages = "195 - ",
135     year = "1976",
136     note = "",
137     issn = "0039-6028",
138     doi = "http://dx.doi.org/10.1016/0039-6028(76)90102-3",
139     url = "http://www.sciencedirect.com/science/article/pii/0039602876901023",
140     key = "tagkey1976195"
141     }
142     @article{Clarke77,
143     title={Molecular dynamics computer simulation of surface properties of crystalline potassium chloride},
144     author={Heyes, David M and Barber, M and Clarke, JHR},
145     journal={Journal of the Chemical Society, Faraday Transactions 2: Molecular and Chemical Physics},
146     volume={73},
147     number={7},
148     pages={1485--1496},
149     year={1977},
150     publisher={Royal Society of Chemistry}
151     }
152     @article{Perram79,
153     title={Electrostatic lattice sums for semi-infinite lattices},
154     author={De Leeuw, Simon W and Perram, John W},
155     journal={Molecular Physics},
156     volume={37},
157     number={4},
158     pages={1313--1322},
159     year={1979},
160     publisher={Taylor \& Francis}
161     }
162     @article{Rahman89,
163     title = {Ewald methods in molecular dynamics for systems of finite extent in one of three dimensions},
164     author = {Rhee, Y.-J. and Halley, J. W. and Hautman, Joseph and Rahman, A.},
165     journal = {Phys. Rev. B},
166     volume = {40},
167     issue = {1},
168     pages = {36--42},
169     numpages = {0},
170     year = {1989},
171     month = {Jul},
172     publisher = {American Physical Society},
173     doi = {10.1103/PhysRevB.40.36},
174     url = {http://link.aps.org/doi/10.1103/PhysRevB.40.36}
175     }
176     @article{Spohr97,
177     author = "Spohr, E.",
178     title = "Effect of electrostatic boundary conditions and system size on the interfacial properties of water and aqueous solutions",
179     journal = "The Journal of Chemical Physics",
180     year = "1997",
181     volume = "107",
182     number = "16",
183     eid = ,
184     pages = "6342-6348",
185     url = "http://scitation.aip.org/content/aip/journal/jcp/107/16/10.1063/1.474295",
186     doi = "http://dx.doi.org/10.1063/1.474295"
187     }
188     @article{Berkowitz99,
189     author = "Yeh, In-Chul and Berkowitz, Max L.",
190     title = "Ewald summation for systems with slab geometry",
191     journal = "The Journal of Chemical Physics",
192     year = "1999",
193     volume = "111",
194     number = "7",
195     eid = ,
196     pages = "3155-3162",
197     url = "http://scitation.aip.org/content/aip/journal/jcp/111/7/10.1063/1.479595",
198     doi = "http://dx.doi.org/10.1063/1.479595"
199     }
200     @article{Wolf92,
201     title={Reconstruction of NaCl surfaces from a dipolar solution to the Madelung problem},
202     author={Wolf, Dieter},
203     journal={Physical review letters},
204     volume={68},
205     number={22},
206     pages={3315--3318},
207     year={1992}
208     }
209     @incollection{Wolf95,
210     year={1995},
211     isbn={978-3-642-79993-8},
212     booktitle={Computer Simulation Studies in Condensed-Matter Physics VIII},
213     volume={80},
214     series={Springer Proceedings in Physics},
215     editor={Landau, DavidP. and Mon, K.K. and Schüttler, Heinz-Bernd},
216     doi={10.1007/978-3-642-79991-4_6},
217     title={Simulation of Ionic Surfaces from an Absolutely Convergent Solution of the Madelung Problem},
218     url={http://dx.doi.org/10.1007/978-3-642-79991-4_6},
219     publisher={Springer Berlin Heidelberg},
220     author={Wolf, D.},
221     pages={57-68},
222     language={English}
223     }
224     @article{Zahn02,
225     author = {Zahn, Dirk and Schilling, Bernd and Kast, Stefan M.},
226     title = {Enhancement of the Wolf Damped Coulomb Potential:  Static, Dynamic, and Dielectric Properties of Liquid Water from Molecular Simulation},
227     journal = {The Journal of Physical Chemistry B},
228     volume = {106},
229     number = {41},
230     pages = {10725-10732},
231     year = {2002},
232     doi = {10.1021/jp025949h},
233    
234     URL = {http://pubs.acs.org/doi/abs/10.1021/jp025949h},
235     eprint = {http://pubs.acs.org/doi/pdf/10.1021/jp025949h}
236     }
237     @article{Luebke13,
238     author = {Shi, Wei and Luebke, David R.},
239     title = {Enhanced Gas Absorption in the Ionic Liquid 1-n-Hexyl-3-methylimidazolium Bis(trifluoromethylsulfonyl)amide ([hmim][Tf2N]) Confined in Silica Slit Pores: A Molecular Simulation Study},
240     journal = {Langmuir},
241     volume = {29},
242     number = {18},
243     pages = {5563-5572},
244     year = {2013},
245     doi = {10.1021/la400226g},
246    
247     URL = {http://pubs.acs.org/doi/abs/10.1021/la400226g},
248     eprint = {http://pubs.acs.org/doi/pdf/10.1021/la400226g}
249     }
250     @article{Daivis13,
251     author = "Kannam, Sridhar Kumar and Todd, B. D. and Hansen, J. S. and Daivis, Peter J.",
252     title = "Interfacial slip friction at a fluid-solid cylindrical boundary",
253     journal = "The Journal of Chemical Physics",
254     year = "2012",
255     volume = "136",
256     number = "24",
257     eid = 244704,
258     pages = "-",
259     url = "http://scitation.aip.org/content/aip/journal/jcp/136/24/10.1063/1.4730167",
260     doi = "http://dx.doi.org/10.1063/1.4730167"
261     }
262     @article{Acevedo13,
263     title={Pairwise Alternatives to Ewald Summation for Calculating Long-Range Electrostatics in Ionic Liquids},
264     author={McCann, Billy W and Acevedo, Orlando},
265     journal={Journal of Chemical Theory and Computation},
266     volume={9},
267     number={2},
268     pages={944--950},
269     year={2013},
270     publisher={American Chemical Society}
271     }
272     @article{Space12,
273     title={Simulation of the Mechanism of Gas Sorption in a Metal--Organic Framework with Open Metal Sites: Molecular Hydrogen in PCN-61},
274     author={Forrest, Katherine A and Pham, Tony and McLaughlin, Keith and Belof, Jonathan L and Stern, Abraham C and Zaworotko, Michael J and Space, Brian},
275     journal={The Journal of Physical Chemistry C},
276     volume={116},
277     number={29},
278     pages={15538--15549},
279     year={2012},
280     publisher={ACS Publications}
281     }
282     @article{English08,
283     title={Effect of electrostatics techniques on the estimation of thermal conductivity via equilibrium molecular dynamics simulation: application to methane hydrate},
284     author={English, Niall J},
285     journal={Molecular Physics},
286     volume={106},
287     number={15},
288     pages={1887--1898},
289     year={2008},
290     publisher={Taylor \& Francis}
291     }
292     @article{Lawrence13,
293     title={Molecular dynamics simulations of the condensation coefficient of water},
294     author={Louden, P and Schoenborn, R and Lawrence, CP},
295     journal={Fluid Phase Equilibria},
296     volume={349},
297     pages={83--86},
298     year={2013},
299     publisher={Elsevier}
300     }
301     @inproceedings{Vergne13,
302     title={Molecular Dynamics Study of Lubrication Phenomena of Nanoscale Liquid Bridge between Surfaces},
303     author={Tokumasu, Takashi and Meurisse, Marie-H{\'e}l{\`e}ne and Fillot, Nicolas and Vergne, Philippe and others},
304     booktitle={tribo-lyon2013 Conference},
305     year={2013}
306     }
307     @article{Ren06,
308     title={Generalized coarse-grained model based on point multipole and Gay-Berne potentials},
309     author={Golubkov, Pavel A and Ren, Pengyu},
310     journal={The Journal of chemical physics},
311     volume={125},
312     number={6},
313     pages={064103},
314     year={2006},
315     publisher={AIP Publishing}
316     }
317     @article{Essex10,
318     title={Coarse-grain modelling of DMPC and DOPC lipid bilayers},
319     author={Orsi, Mario and Michel, Julien and Essex, Jonathan W},
320     journal={Journal of Physics: Condensed Matter},
321     volume={22},
322     number={15},
323     pages={155106},
324     year={2010},
325     publisher={IOP Publishing}
326     }
327     @article{Essex11,
328     title={The ELBA force field for coarse-grain modeling of lipid membranes},
329     author={Orsi, Mario and Essex, Jonathan W},
330     journal={PloS one},
331     volume={6},
332     number={12},
333     pages={e28637},
334     year={2011},
335     publisher={Public Library of Science}
336     }
337     @article{Ichiye10_1,
338     title={Solvation of glucose, trehalose, and sucrose by the soft-sticky dipole--quadrupole--octupole water model},
339     author={Te, Jerez A and Tan, Ming-Liang and Ichiye, Toshiko},
340     journal={Chemical physics letters},
341     volume={491},
342     number={4},
343     pages={218--223},
344     year={2010},
345     publisher={Elsevier}
346     }
347     @article{Ichiye10_2,
348     title={Temperature and pressure dependence of the optimized soft-sticky dipole-quadrupole-octupole water model},
349     author={Te, Jerez A and Ichiye, Toshiko},
350     journal={The Journal of chemical physics},
351     volume={132},
352     number={11},
353     pages={114511},
354     year={2010},
355     publisher={AIP Publishing}
356     }
357     @article{Ichiye10_3,
358     title={Understanding structural effects of multipole moments on aqueous solvation of ions using the soft-sticky dipole--quadrupole--octupole water model},
359     author={Te, Jerez A and Ichiye, Toshiko},
360     journal={Chemical physics letters},
361     volume={499},
362     number={4},
363     pages={219--225},
364     year={2010},
365     publisher={Elsevier}
366     }
367     @article{Gordon10,
368     author = {Ponder, Jay W. and Wu, Chuanjie and Ren, Pengyu and Pande, Vijay S. and Chodera, John D. and Schnieders, Michael J. and Haque, Imran and Mobley, David L. and Lambrecht, Daniel S. and DiStasio, Robert A. and Head-Gordon, Martin and Clark, Gary N. I. and Johnson, Margaret E. and Head-Gordon, Teresa},
369     title = {Current Status of the AMOEBA Polarizable Force Field},
370     journal = {The Journal of Physical Chemistry B},
371     volume = {114},
372     number = {8},
373     pages = {2549-2564},
374     year = {2010},
375     doi = {10.1021/jp910674d},
376     note ={PMID: 20136072},
377    
378     URL = {http://pubs.acs.org/doi/abs/10.1021/jp910674d},
379     eprint = {http://pubs.acs.org/doi/pdf/10.1021/jp910674d}
380     }
381     @article{Gordon07,
382     title={Polarizable atomic multipole solutes in a Poisson-Boltzmann continuum},
383     author={Schnieders, Michael J and Baker, Nathan A and Ren, Pengyu and Ponder, Jay W},
384     journal={The Journal of chemical physics},
385     volume={126},
386     number={12},
387     pages={124114},
388     year={2007},
389     publisher={AIP Publishing}
390     }
391     @article{Smith80,
392     abstract = {Modern standard reference for the Ewald sum.},
393     added-at = {2007-06-15T17:33:15.000+0200},
394     author = {{de Leeuw}, Simon W. and Perram, John W. and Smith, E. R.},
395     biburl = {http://www.bibsonomy.org/bibtex/28ddf5ac6538eb4a6426790403f7c193f/kaigrass},
396     interhash = {f6d7bd194ef65c5f7142d93eef865ea1},
397     intrahash = {8ddf5ac6538eb4a6426790403f7c193f},
398     journal = {Proc. R. Soc. Lond. A},
399     keywords = {Ewald correction dipole sum,},
400     pages = {27--56},
401     timestamp = {2007-06-15T17:33:15.000+0200},
402     title = {Simulation of electrostatic systems in periodic boundary conditions.
403     {I}. Lattice sums and dielectric constants},
404     volume = 373,
405     year = 1980
406     }
407     @article{Lacman65,
408     author = {Lacman, R.},
409     journal = {Colloq. Int. CNRS},
410     pages = {195},
411     title = {},
412     volume = 152,
413     year = 1965
414     }
415    
416     @article{Fukuda13,
417     author = "Fukuda, Ikuo",
418     title = "Zero-multipole summation method for efficiently estimating electrostatic interactions in molecular system",
419     journal = "The Journal of Chemical Physics",
420     year = "2013",
421     volume = "139",
422     number = "17",
423     eid = 174107,
424     pages = "-",
425     url = "http://scitation.aip.org/content/aip/journal/jcp/139/17/10.1063/1.4827055",
426     doi = "http://dx.doi.org/10.1063/1.4827055"
427     }
428    
429     @article{PaperI,
430     author = {Lamichhane, Madan and Newman, Kathie E. and Gezelter, J. Daniel}
431     title = "Real space alternatives to the Ewald
432     Sum. I. Taylor-shifted and Gradient-shifted electrostatics for multipoles",
433     journal = "The Journal of Chemical Physics",
434     year = "2014",
435     volume = "-",
436     number = "-",
437     pages = "-",
438     }
439    
440    
441    
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443    
444