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1 mlamichh 4114 %% This BibTeX bibliography file was created using BibDesk.
2     %% http://bibdesk.sourceforge.net/
3    
4    
5 gezelter 4175 %% Created for Dan Gezelter at 2014-06-06 11:37:13 -0400
6 mlamichh 4114
7    
8     %% Saved with string encoding Unicode (UTF-8)
9    
10    
11     @string{cpl = {Chem. Phys. Lett.}}
12    
13     @string{jctc = {J. Chem. Theory Comput.}}
14    
15     @string{jpcb = {J. Phys. Chem. B}}
16    
17     @string{jpcc = {J. Phys. Chem. C}}
18    
19     @string{mp = {Mol. Phys.}}
20    
21 gezelter 4167
22 gezelter 4175 @article{Perram88,
23     Author = {J.~W. Perram and H.~G. Petersen and S.~W. {de Leeuw}},
24     Date-Added = {2014-06-06 15:36:28 +0000},
25     Date-Modified = {2014-06-06 15:36:28 +0000},
26     Journal = {Mol. Phys.},
27     Pages = {875-893},
28     Title = {An algorithm for the simulation of condensed matter that grows as the 3/2 power of the number of particles},
29     Volume = {65},
30     Year = {1988}}
31    
32     @book{openmd,
33     Author = {J. Daniel Gezelter and Madan Lamichhane and Joseph Michalka and Patrick Louden and Kelsey M. Stocker and Shenyu Kuang and James Marr and Chunlei Li and Charles F. Vardeman and Teng Lin and Christopher J. Fennell and Xiuquan Sun and Kyle Daily and Yang Zheng and Matthew A. Meineke},
34     Date-Added = {2014-06-06 15:16:05 +0000},
35     Date-Modified = {2014-06-06 15:18:03 +0000},
36     Publisher = {An open source molecular dynamics engine},
37     Title = {OpenMD},
38     Url = {http://openmd.org (accessed 11/13/2013)},
39     Year = {version 2.2, {\tt http://openmd.org} (accessed 4/17/2014)},
40     Bdsk-Url-1 = {http://openmd.org%20(accessed%2011/13/2013)}}
41    
42 gezelter 4170 @article{Nagai01081960,
43     Abstract = {The quadrupole array for the lowest energy of quadrupole interaction in crystals is obtained by generalizing Luttinger and Tisza's theory of dipole interaction. The theory is presented for the two kinds of problems: the simplest case of quadrupole pertaining to a doubly degenerate orbital eg and the other general cases both for the cubic crystals. In the former case, the quadrupole interaction is written in terms of fictitious spins, whence we can get the solution of lowest energy classically, serving to obtain some informations of the orbital ordering in compounds with Mn3+, Cu2+ and Cr2+. In the latter cases, the five components of the quadrupole are totally effective, leading to a rather complicated problem. The classical solution is, however, easily obtained, though somewhat complicated. The quadrupole array of lowest energy in face-centered cubic lattice proves to be realized in molecular crystals N2, N2O, CO2 and CO, which is accompanied with large quadrupole but without or with small dipole moment.},
44     Author = {Nagai, Ojiro and Nakamura, Tuto},
45     Date-Added = {2014-06-04 18:33:25 +0000},
46     Date-Modified = {2014-06-04 18:33:25 +0000},
47     Doi = {10.1143/PTP.24.432},
48     Eprint = {http://ptp.oxfordjournals.org/content/24/2/432.full.pdf+html},
49     Journal = {Progress of Theoretical Physics},
50     Number = {2},
51     Pages = {432-454},
52     Title = {Quadrupole Interaction in Crystals},
53     Url = {http://ptp.oxfordjournals.org/content/24/2/432.abstract},
54     Volume = {24},
55     Year = {1960},
56     Bdsk-Url-1 = {http://ptp.oxfordjournals.org/content/24/2/432.abstract},
57     Bdsk-Url-2 = {http://dx.doi.org/10.1143/PTP.24.432}}
58    
59     @article{Nagai01091963,
60     Author = {Nagai, Ojiro and Nakamura, Tuto},
61     Date-Added = {2014-06-04 18:33:25 +0000},
62     Date-Modified = {2014-06-04 18:33:25 +0000},
63     Doi = {10.1143/PTP.30.412a},
64     Eprint = {http://ptp.oxfordjournals.org/content/30/3/412.1.full.pdf+html},
65     Journal = {Progress of Theoretical Physics},
66     Number = {3},
67     Pages = {412},
68     Title = {Quadrupole Interaction in Crystals},
69     Url = {http://ptp.oxfordjournals.org/content/30/3/412.1.short},
70     Volume = {30},
71     Year = {1963},
72     Bdsk-Url-1 = {http://ptp.oxfordjournals.org/content/30/3/412.1.short},
73     Bdsk-Url-2 = {http://dx.doi.org/10.1143/PTP.30.412a}}
74    
75     @article{LT,
76     Author = {Luttinger, J. M. and Tisza, L.},
77     Date-Added = {2014-06-04 18:33:16 +0000},
78     Date-Modified = {2014-06-04 18:33:16 +0000},
79     Doi = {10.1103/PhysRev.70.954},
80     Issue = {11-12},
81     Journal = {Phys. Rev.},
82     Month = {Dec},
83     Pages = {954--964},
84     Publisher = {American Physical Society},
85     Title = {Theory of Dipole Interaction in Crystals},
86     Url = {http://link.aps.org/doi/10.1103/PhysRev.70.954},
87     Volume = {70},
88     Year = {1946},
89     Bdsk-Url-1 = {http://link.aps.org/doi/10.1103/PhysRev.70.954},
90     Bdsk-Url-2 = {http://dx.doi.org/10.1103/PhysRev.70.954}}
91    
92     @article{LT2,
93     Author = {Luttinger, J. M. and Tisza, Laszo},
94     Date-Added = {2014-06-04 18:33:16 +0000},
95     Date-Modified = {2014-06-04 18:33:16 +0000},
96     Doi = {10.1103/PhysRev.72.257},
97     Issue = {3},
98     Journal = {Phys. Rev.},
99     Month = {Aug},
100     Pages = {257--257},
101     Publisher = {American Physical Society},
102     Title = {Errata: Theory of Dipole Interaction in Crystals [Phys. Rev. 70, 954 (1946)]},
103     Url = {http://link.aps.org/doi/10.1103/PhysRev.72.257},
104     Volume = {72},
105     Year = {1947},
106     Bdsk-Url-1 = {http://link.aps.org/doi/10.1103/PhysRev.72.257},
107     Bdsk-Url-2 = {http://dx.doi.org/10.1103/PhysRev.72.257}}
108    
109     @article{Sauer,
110     Author = {Sauer, J. A.},
111     Date-Added = {2014-06-04 18:33:04 +0000},
112     Date-Modified = {2014-06-04 18:33:04 +0000},
113     Doi = {10.1103/PhysRev.57.142},
114     Issue = {2},
115     Journal = {Phys. Rev.},
116     Pages = {142--146},
117     Publisher = {American Physical Society},
118     Title = {Magnetic Energy Constants of Dipolar Lattices},
119     Url = {http://link.aps.org/doi/10.1103/PhysRev.57.142},
120     Volume = {57},
121     Year = {1940},
122     Bdsk-Url-1 = {http://link.aps.org/doi/10.1103/PhysRev.57.142},
123     Bdsk-Url-2 = {http://dx.doi.org/10.1103/PhysRev.57.142}}
124    
125 gezelter 4168 @article{Chen:2004du,
126     Abstract = {Structural and thermodynamic properties of ionic fluids are related to those of a simpler "mimic" system with short ranged intermolecular interactions in a spatially varying effective field by use of local molecular field (LMF) theory, already successfully applied to nonuniform simple fluids. By consistently using the LMF approximation to describe only the slowly varying part of the Coulomb interaction, which we view as arising from a rigid Gaussian charge distribution with an appropriately chosen width a, exceptionally accurate results can be found. In this paper we study a uniform system of charged hard spheres in a uniform neutralizing background, where these ideas can be presented in their simplest form. At low densities the LMF theory reduces to a generalized version of the Poisson-Boltzmann approximation, but the predicted structure factor satisfies the exact Stillinger-Lovett moment conditions, and with optimal choice of or the lowest order approximation remains accurate for much stronger couplings. At high density and strong couplings the pair correlation function in the uniform mimic system with short ranged interactions is very similar to that of the full ionic system. A simple analytic formula can then describe the difference in internal energy between the ionic system and the associated mimic system.},
127     Address = {1155 16TH ST, NW, WASHINGTON, DC 20036 USA},
128     Author = {Chen, YG and Kaur, C and Weeks, JD},
129     Date = {DEC 23 2004},
130     Date-Added = {2014-06-04 15:12:54 +0000},
131     Date-Modified = {2014-06-04 15:12:54 +0000},
132     Doi = {DOI 10.1021/jp0469261},
133     Journal = jpcb,
134     Pages = {19874-19884},
135     Publisher = {AMER CHEMICAL SOC},
136     Timescited = {5},
137     Title = {Connecting systems with short and long ranged interactions: Local molecular field theory for ionic fluids},
138     Volume = {108},
139     Year = {2004},
140     Bdsk-Url-1 = {http://dx.doi.org/10.1021/jp0469261}}
141    
142     @article{Chen:2006ii,
143     Abstract = {Strong, short-ranged positional correlations involving counterions can induce a net attractive force between negatively charged strands of DNA and lead to the formation of ion pairs in dilute ionic solutions. However, the long range of the Coulomb interactions impedes the development of a simple local picture. We address this general problem by mapping the properties of a nonuniform system with Coulomb interactions onto those of a simpler system with short-ranged intermolecular interactions in an effective external field that accounts for the averaged effects of appropriately chosen long-ranged and slowly varying components of the Coulomb interactions. The remaining short-ranged components combine with the other molecular core interactions and strongly affect pair correlations in dense or strongly coupled systems. We show that pair correlation functions in the effective short-ranged system closely resemble those in the uniform primitive model of ionic solutions and illustrate the formation of ion pairs and clusters at low densities. The theory accurately describes detailed features of the effective attraction between two equally charged walls at strong coupling and intermediate separations of the walls. Analytical results for the minimal coupling strength needed to get any attraction and for the separation at which the attractive force is a maximum are presented.},
144     Address = {2101 CONSTITUTION AVE NW, WASHINGTON, DC 20418 USA},
145     Author = {Chen, YG and Weeks, JD},
146     Date = {MAY 16 2006},
147     Date-Added = {2014-06-04 15:12:54 +0000},
148     Date-Modified = {2014-06-04 15:12:54 +0000},
149     Doi = {DOI 10.1073/pnas.0600282103},
150     Journal = pnas,
151     Keywords = {effective short-ranged model; ion pairing; mean field theory; Poission-Boltzmann},
152     Pages = {7560-7565},
153     Publisher = {NATL ACAD SCIENCES},
154     Timescited = {4},
155     Title = {Local molecular field theory for effective attractions between like charged objects in systems with strong Coulomb interactions},
156     Volume = {103},
157     Year = {2006},
158     Bdsk-Url-1 = {http://dx.doi.org/10.1073/pnas.0600282103}}
159    
160     @article{Denesyuk:2008ez,
161     Abstract = {We propose a simplified version of local molecular field (LMF) theory to treat Coulomb interactions in simulations of ionic fluids. LMF theory relies on splitting the Coulomb potential into a short-ranged part that combines with other short-ranged core interactions and is simulated explicitly. The averaged effects of the remaining long-ranged part are taken into account through a self-consistently determined effective external field. The theory contains an adjustable length parameter sigma that specifies the cutoff distance for the short-ranged interaction. This can be chosen to minimize the errors resulting from the mean-field treatment of the complementary long-ranged part. Here we suggest that in many cases an accurate approximation to the effective field can be obtained directly from the equilibrium charge density given by the Debye theory of screening, thus eliminating the need for a self-consistent treatment. In the limit sigma -> 0, this assumption reduces to the classical Debye approximation. We examine the numerical performance of this approximation for a simple model of a symmetric ionic mixture. Our results for thermodynamic and structural properties of uniform ionic mixtures agree well with similar results of Ewald simulations of the full ionic system. In addition, we have used the simplified theory in a grand-canonical simulation of a nonuniform ionic mixture where an ion has been fixed at the origin. Simulations using short-ranged truncations of the Coulomb interactions alone do not satisfy the exact condition of complete screening of the fixed ion, but this condition is recovered when the effective field is taken into account. We argue that this simplified approach can also be used in the simulations of more complex nonuniform systems. (c) 2008 American Institute of Physics.},
162     Address = {CIRCULATION \& FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1, MELVILLE, NY 11747-4501 USA},
163     Author = {Denesyuk, Natalia A. and Weeks, John D.},
164     Date = {MAR 28 2008},
165     Date-Added = {2014-06-04 15:12:54 +0000},
166     Date-Modified = {2014-06-04 15:12:54 +0000},
167     Doi = {ARTN 124109},
168     Journal = jcp,
169     Publisher = {AMER INST PHYSICS},
170     Timescited = {0},
171     Title = {A new approach for efficient simulation of {C}oulomb interactions in ionic fluids},
172     Volume = {128},
173     Year = {2008},
174     Bdsk-Url-1 = {http://dx.doi.org/124109}}
175    
176     @article{Rodgers:2006nw,
177     Abstract = {Effective attraction between like-charged walls mediated by counterions is studied using local molecular field (LMF) theory. Monte Carlo simulations of the "mimic system" given by LMF theory, with short-ranged "Coulomb core" interactions in an effective single particle potential incorporating a mean-field average of the long-ranged Coulomb interactions, provide a direct test of the theory, and are in excellent agreement with more complex simulations of the full Coulomb system by Moreira and Netz [Eur. Phys. J. E 8, 33 (2002)]. A simple, generally applicable criterion to determine the consistency parameter sigma(min) needed for accurate use of the LMF theory is presented.},
178     Address = {ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA},
179     Author = {Rodgers, Jocelyn M. and Kaur, Charanbir and Chen, Yng-Gwei and Weeks, John D.},
180     Date = {SEP 1 2006},
181     Date-Added = {2014-06-04 15:12:54 +0000},
182     Date-Modified = {2014-06-04 15:12:54 +0000},
183     Doi = {ARTN 097801},
184     Journal = prl,
185     Publisher = {AMERICAN PHYSICAL SOC},
186     Timescited = {1},
187     Title = {Attraction between like-charged walls: Short-ranged simulations using local molecular field theory},
188     Volume = {97},
189     Year = {2006},
190     Bdsk-Url-1 = {http://dx.doi.org/097801}}
191    
192     @article{Wu:044107,
193     Author = {Xiongwu Wu and Bernard R. Brooks},
194     Date-Added = {2014-06-04 15:12:16 +0000},
195     Date-Modified = {2014-06-04 15:12:16 +0000},
196     Doi = {10.1063/1.1836733},
197     Eid = {044107},
198     Journal = jcp,
199     Keywords = {Molecular Dynamics Method; Potential Energy Functions},
200     Number = {4},
201     Numpages = {18},
202     Pages = {044107},
203     Publisher = {Aip},
204     Title = {Isotropic Periodic Sum: A Method for the Calculation of Long-Range Interactions},
205     Url = {Http://Link.Aip.Org/Link/?jcp/122/044107/1},
206     Volume = {122},
207     Year = {2005},
208     Bdsk-Url-1 = {Http://Link.Aip.Org/Link/?jcp/122/044107/1},
209     Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.1836733}}
210    
211     @article{Smith82,
212     Author = {W. Smith},
213     Date-Added = {2014-06-04 15:05:56 +0000},
214     Date-Modified = {2014-06-04 15:05:56 +0000},
215     Journal = {CCP5 Information quarterly},
216     Pages = {13-25},
217     Title = {Point multipoles in the \uppercase{E}wald summation},
218     Volume = 4,
219     Year = 1982}
220    
221     @article{Smith98,
222     Author = {W. Smith},
223     Date-Added = {2014-06-04 15:05:56 +0000},
224     Date-Modified = {2014-06-04 15:05:56 +0000},
225     Journal = {CCP5 Information Quarterly},
226     Pages = {18-30},
227     Title = {Point multipoles in the \uppercase{E}wald summation (Revisited)},
228     Volume = {46},
229     Year = {1998}}
230    
231     @article{Ren:2004kx,
232     Author = {Ren, Pengyu and Ponder, Jay W.},
233     Date-Added = {2014-06-04 13:47:47 +0000},
234     Date-Modified = {2014-06-04 13:47:47 +0000},
235     Doi = {10.1021/jp0484332},
236     Eprint = {http://pubs.acs.org/doi/pdf/10.1021/jp0484332},
237     Journal = {The Journal of Physical Chemistry B},
238     Number = {35},
239     Pages = {13427-13437},
240     Title = {Temperature and Pressure Dependence of the AMOEBA Water Model},
241     Url = {http://pubs.acs.org/doi/abs/10.1021/jp0484332},
242     Volume = {108},
243     Year = {2004},
244     Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp0484332},
245     Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp0484332}}
246    
247     @article{Ren:2003uq,
248     Author = {Ren, Pengyu and Ponder, Jay W.},
249     Date-Added = {2014-06-04 13:47:15 +0000},
250     Date-Modified = {2014-06-04 13:58:58 +0000},
251     Doi = {10.1021/jp027815+},
252     Eprint = {http://pubs.acs.org/doi/pdf/10.1021/jp027815\%2B},
253     Journal = {The Journal of Physical Chemistry B},
254     Number = {24},
255     Pages = {5933-5947},
256     Title = {Polarizable Atomic Multipole Water Model for Molecular Mechanics Simulation},
257     Url = {http://pubs.acs.org/doi/abs/10.1021/jp027815\%2B},
258     Volume = {107},
259     Year = {2003},
260     Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp027815%2B},
261     Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp027815+}}
262    
263     @article{Wang:2013fk,
264     Author = {Wang, Lee-Ping and Head-Gordon, Teresa and Ponder, Jay W. and Ren, Pengyu and Chodera, John D. and Eastman, Peter K. and Martinez, Todd J. and Pande, Vijay S.},
265     Date-Added = {2014-06-04 13:44:11 +0000},
266     Date-Modified = {2014-06-04 13:44:11 +0000},
267     Doi = {10.1021/jp403802c},
268     Eprint = {http://pubs.acs.org/doi/pdf/10.1021/jp403802c},
269     Journal = {The Journal of Physical Chemistry B},
270     Number = {34},
271     Pages = {9956-9972},
272     Title = {Systematic Improvement of a Classical Molecular Model of Water},
273     Url = {http://pubs.acs.org/doi/abs/10.1021/jp403802c},
274     Volume = {117},
275     Year = {2013},
276     Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp403802c},
277     Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp403802c}}
278    
279 gezelter 4167 @incollection{Wolf95,
280     Author = {Wolf, D.},
281     Booktitle = {Computer Simulation Studies in Condensed-Matter Physics VIII},
282     Date-Added = {2014-05-20 18:53:22 +0000},
283     Date-Modified = {2014-05-20 18:53:22 +0000},
284     Doi = {10.1007/978-3-642-79991-4_6},
285     Editor = {Landau, DavidP. and Mon, K.K. and Sch{\"u}ttler, Heinz-Bernd},
286     Isbn = {978-3-642-79993-8},
287     Language = {English},
288     Pages = {57-68},
289     Publisher = {Springer Berlin Heidelberg},
290     Series = {Springer Proceedings in Physics},
291     Title = {Simulation of Ionic Surfaces from an Absolutely Convergent Solution of the Madelung Problem},
292     Url = {http://dx.doi.org/10.1007/978-3-642-79991-4_6},
293     Volume = {80},
294     Year = {1995},
295     Bdsk-Url-1 = {http://dx.doi.org/10.1007/978-3-642-79991-4_6}}
296    
297     @article{Parry:1976fq,
298     Author = {D.E. Parry},
299     Date-Added = {2014-05-20 18:44:42 +0000},
300     Date-Modified = {2014-05-20 18:44:42 +0000},
301     Doi = {http://dx.doi.org/10.1016/0039-6028(76)90102-3},
302     Issn = {0039-6028},
303     Journal = {Surface Science},
304     Key = {tagkey1976195},
305     Number = {1},
306     Pages = {195},
307     Title = {Errata},
308     Url = {http://www.sciencedirect.com/science/article/pii/0039602876901023},
309     Volume = {54},
310     Year = {1976},
311     Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/pii/0039602876901023},
312     Bdsk-Url-2 = {http://dx.doi.org/10.1016/0039-6028(76)90102-3}}
313    
314     @article{Parry:1975if,
315     Author = {D.E. Parry},
316     Date-Added = {2014-05-20 18:42:44 +0000},
317     Date-Modified = {2014-05-20 18:42:44 +0000},
318     Doi = {http://dx.doi.org/10.1016/0039-6028(75)90362-3},
319     Issn = {0039-6028},
320     Journal = {Surface Science},
321     Number = {2},
322     Pages = {433 - 440},
323     Title = {The electrostatic potential in the surface region of an ionic crystal},
324     Url = {http://www.sciencedirect.com/science/article/pii/0039602875903623},
325     Volume = {49},
326     Year = {1975},
327     Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/pii/0039602875903623},
328     Bdsk-Url-2 = {http://dx.doi.org/10.1016/0039-6028(75)90362-3}}
329    
330     @article{Essmann:1995pb,
331     Author = {Essmann, Ulrich and Perera, Lalith and Berkowitz, Max L. and Darden, Tom and Lee, Hsing and Pedersen, Lee G.},
332     Date-Added = {2014-05-20 17:33:26 +0000},
333     Date-Modified = {2014-05-20 17:33:26 +0000},
334     Doi = {http://dx.doi.org/10.1063/1.470117},
335     Journal = {The Journal of Chemical Physics},
336     Number = {19},
337     Pages = {8577-8593},
338     Title = {A smooth particle mesh Ewald method},
339     Url = {http://scitation.aip.org/content/aip/journal/jcp/103/19/10.1063/1.470117},
340     Volume = {103},
341     Year = {1995},
342     Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/103/19/10.1063/1.470117},
343     Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.470117}}
344    
345     @article{Ponder:2010vl,
346     Author = {Ponder, Jay W. and Wu, Chuanjie and Ren, Pengyu and Pande, Vijay S. and Chodera, John D. and Schnieders, Michael J. and Haque, Imran and Mobley, David L. and Lambrecht, Daniel S. and DiStasio, Robert A. and Head-Gordon, Martin and Clark, Gary N. I. and Johnson, Margaret E. and Head-Gordon, Teresa},
347     Date-Added = {2014-05-20 17:32:49 +0000},
348     Date-Modified = {2014-05-20 17:32:49 +0000},
349     Doi = {10.1021/jp910674d},
350     Eprint = {http://pubs.acs.org/doi/pdf/10.1021/jp910674d},
351     Journal = {The Journal of Physical Chemistry B},
352     Note = {PMID: 20136072},
353     Number = {8},
354     Pages = {2549-2564},
355     Title = {Current Status of the AMOEBA Polarizable Force Field},
356     Url = {http://pubs.acs.org/doi/abs/10.1021/jp910674d},
357     Volume = {114},
358     Year = {2010},
359     Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp910674d},
360     Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp910674d}}
361    
362     @article{Spohr:1997sf,
363     Author = {Spohr, E.},
364     Date-Added = {2014-05-20 17:32:27 +0000},
365     Date-Modified = {2014-05-20 17:32:27 +0000},
366     Doi = {http://dx.doi.org/10.1063/1.474295},
367     Journal = {The Journal of Chemical Physics},
368     Number = {16},
369     Pages = {6342-6348},
370     Title = {Effect of electrostatic boundary conditions and system size on the interfacial properties of water and aqueous solutions},
371     Url = {http://scitation.aip.org/content/aip/journal/jcp/107/16/10.1063/1.474295},
372     Volume = {107},
373     Year = {1997},
374     Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/107/16/10.1063/1.474295},
375     Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.474295}}
376    
377     @article{Shi:2013ij,
378     Author = {Shi, Wei and Luebke, David R.},
379     Date-Added = {2014-05-20 17:31:47 +0000},
380     Date-Modified = {2014-05-20 17:31:47 +0000},
381     Doi = {10.1021/la400226g},
382     Eprint = {http://pubs.acs.org/doi/pdf/10.1021/la400226g},
383     Journal = {Langmuir},
384     Number = {18},
385     Pages = {5563-5572},
386     Title = {Enhanced Gas Absorption in the Ionic Liquid 1-n-Hexyl-3-methylimidazolium Bis(trifluoromethylsulfonyl)amide ([hmim][Tf2N]) Confined in Silica Slit Pores: A Molecular Simulation Study},
387     Url = {http://pubs.acs.org/doi/abs/10.1021/la400226g},
388     Volume = {29},
389     Year = {2013},
390     Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/la400226g},
391     Bdsk-Url-2 = {http://dx.doi.org/10.1021/la400226g}}
392    
393     @article{Zahn:2002hc,
394     Author = {Zahn, Dirk and Schilling, Bernd and Kast, Stefan M.},
395     Date-Added = {2014-05-20 17:31:28 +0000},
396     Date-Modified = {2014-05-20 17:31:28 +0000},
397     Doi = {10.1021/jp025949h},
398     Eprint = {http://pubs.acs.org/doi/pdf/10.1021/jp025949h},
399     Journal = {The Journal of Physical Chemistry B},
400     Number = {41},
401     Pages = {10725-10732},
402     Title = {Enhancement of the Wolf Damped Coulomb Potential:  Static, Dynamic, and Dielectric Properties of Liquid Water from Molecular Simulation},
403     Url = {http://pubs.acs.org/doi/abs/10.1021/jp025949h},
404     Volume = {106},
405     Year = {2002},
406     Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp025949h},
407     Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp025949h}}
408    
409     @article{Rhee:1989kl,
410     Author = {Rhee, Y.-J. and Halley, J. W. and Hautman, Joseph and Rahman, A.},
411     Date-Added = {2014-05-20 17:29:57 +0000},
412     Date-Modified = {2014-05-20 17:29:59 +0000},
413     Doi = {10.1103/PhysRevB.40.36},
414     Issue = {1},
415     Journal = {Phys. Rev. B},
416     Month = {Jul},
417     Numpages = {0},
418     Pages = {36--42},
419     Publisher = {American Physical Society},
420     Title = {Ewald methods in molecular dynamics for systems of finite extent in one of three dimensions},
421     Url = {http://link.aps.org/doi/10.1103/PhysRevB.40.36},
422     Volume = {40},
423     Year = {1989},
424     Bdsk-Url-1 = {http://link.aps.org/doi/10.1103/PhysRevB.40.36},
425     Bdsk-Url-2 = {http://dx.doi.org/10.1103/PhysRevB.40.36}}
426    
427     @article{Yeh:1999oq,
428     Author = {Yeh, In-Chul and Berkowitz, Max L.},
429     Date-Added = {2014-05-20 17:29:25 +0000},
430     Date-Modified = {2014-05-20 17:29:25 +0000},
431     Doi = {http://dx.doi.org/10.1063/1.479595},
432     Journal = {The Journal of Chemical Physics},
433     Number = {7},
434     Pages = {3155-3162},
435     Title = {Ewald summation for systems with slab geometry},
436     Url = {http://scitation.aip.org/content/aip/journal/jcp/111/7/10.1063/1.479595},
437     Volume = {111},
438     Year = {1999},
439     Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/111/7/10.1063/1.479595},
440     Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.479595}}
441    
442     @article{Wolf:1999dn,
443     Author = {Wolf, D. and Keblinski, P. and Phillpot, S. R. and Eggebrecht, J.},
444     Date-Added = {2014-05-20 17:28:54 +0000},
445     Date-Modified = {2014-05-20 17:28:54 +0000},
446     Doi = {http://dx.doi.org/10.1063/1.478738},
447     Journal = {The Journal of Chemical Physics},
448     Number = {17},
449     Pages = {8254-8282},
450     Title = {Exact method for the simulation of Coulombic systems by spherically truncated, pairwise r−1 summation},
451     Url = {http://scitation.aip.org/content/aip/journal/jcp/110/17/10.1063/1.478738},
452     Volume = {110},
453     Year = {1999},
454     Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/110/17/10.1063/1.478738},
455     Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.478738}}
456    
457     @article{Kannam:2012rr,
458     Author = {Kannam, Sridhar Kumar and Todd, B. D. and Hansen, J. S. and Daivis, Peter J.},
459     Date-Added = {2014-05-20 17:28:19 +0000},
460     Date-Modified = {2014-05-20 17:28:19 +0000},
461     Doi = {http://dx.doi.org/10.1063/1.4730167},
462     Eid = 244704,
463     Journal = {The Journal of Chemical Physics},
464     Number = {24},
465     Pages = {-},
466     Title = {Interfacial slip friction at a fluid-solid cylindrical boundary},
467     Url = {http://scitation.aip.org/content/aip/journal/jcp/136/24/10.1063/1.4730167},
468     Volume = {136},
469     Year = {2012},
470     Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/136/24/10.1063/1.4730167},
471     Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.4730167}}
472    
473     @article{Fennell:2006lq,
474     Author = {Fennell, Christopher J. and Gezelter, J. Daniel},
475     Date-Added = {2014-05-20 17:27:55 +0000},
476     Date-Modified = {2014-05-20 17:27:55 +0000},
477     Doi = {http://dx.doi.org/10.1063/1.2206581},
478     Eid = 234104,
479     Journal = {The Journal of Chemical Physics},
480     Number = {23},
481     Pages = {-},
482     Title = {Is the Ewald summation still necessary? Pairwise alternatives to the accepted standard for long-range electrostatics},
483     Url = {http://scitation.aip.org/content/aip/journal/jcp/124/23/10.1063/1.2206581},
484     Volume = {124},
485     Year = {2006},
486     Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/124/23/10.1063/1.2206581},
487     Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.2206581}}
488    
489     @article{Darden:1993pd,
490     Author = {Darden, Tom and York, Darrin and Pedersen, Lee},
491     Date-Added = {2014-05-20 17:27:18 +0000},
492     Date-Modified = {2014-05-20 17:27:18 +0000},
493     Doi = {http://dx.doi.org/10.1063/1.464397},
494     Journal = {The Journal of Chemical Physics},
495     Number = {12},
496     Pages = {10089-10092},
497     Title = {Particle mesh Ewald: An Nâ‹…log(N) method for Ewald sums in large systems},
498     Url = {http://scitation.aip.org/content/aip/journal/jcp/98/12/10.1063/1.464397},
499     Volume = {98},
500     Year = {1993},
501     Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/98/12/10.1063/1.464397},
502     Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.464397}}
503    
504     @article{Clarke:1986eu,
505     Author = {Clarke, J. H. R. and Smith, W. and Woodcock, L. V.},
506     Date-Added = {2014-05-20 17:26:40 +0000},
507     Date-Modified = {2014-05-20 17:26:40 +0000},
508     Doi = {http://dx.doi.org/10.1063/1.450391},
509     Journal = {The Journal of Chemical Physics},
510     Number = {4},
511     Pages = {2290-2294},
512     Title = {Short range effective potentials for ionic fluids},
513     Url = {http://scitation.aip.org/content/aip/journal/jcp/84/4/10.1063/1.450391},
514     Volume = {84},
515     Year = {1986},
516     Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/84/4/10.1063/1.450391},
517     Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.450391}}
518    
519     @article{Fukuda:2013sf,
520     Author = {Fukuda, Ikuo},
521     Date-Added = {2014-05-20 17:25:01 +0000},
522     Date-Modified = {2014-05-20 17:25:01 +0000},
523     Doi = {http://dx.doi.org/10.1063/1.4827055},
524     Eid = 174107,
525     Journal = {The Journal of Chemical Physics},
526     Number = {17},
527     Pages = {-},
528     Title = {Zero-multipole summation method for efficiently estimating electrostatic interactions in molecular system},
529     Url = {http://scitation.aip.org/content/aip/journal/jcp/139/17/10.1063/1.4827055},
530     Volume = {139},
531     Year = {2013},
532     Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/139/17/10.1063/1.4827055},
533     Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.4827055}}
534    
535 mlamichh 4114 @article{Woodcock75,
536 gezelter 4167 Author = {Woodcock, LV},
537     Journal = {Vol. 3Plenum, New York},
538     Pages = {1},
539     Title = {Advances in molten salt chemistry},
540     Year = {1975}}
541    
542 mlamichh 4114 @article{Takada93,
543 gezelter 4167 Author = {Shimada, Jiro and Kaneko, Hiroki and Takada, Toshikazu},
544     Journal = {Journal of computational chemistry},
545     Number = {7},
546     Pages = {867--878},
547     Publisher = {Wiley Online Library},
548     Title = {Efficient calculations of Coulombic interactions in biomolecular simulations with periodic boundary conditions},
549     Volume = {14},
550     Year = {1993}}
551    
552 mlamichh 4114 @article{Gunsteren94,
553 gezelter 4167 Author = {Luty, Brock A and Davis, Malcolm E and Tironi, Ilario G and Van Gunsteren, Wilfred F},
554     Journal = {Molecular Simulation},
555     Number = {1},
556     Pages = {11--20},
557     Publisher = {Taylor \& Francis},
558     Title = {A comparison of particle-particle, particle-mesh and Ewald methods for calculating electrostatic interactions in periodic molecular systems},
559     Volume = {14},
560     Year = {1994}}
561    
562 mlamichh 4114 @article{Gunsteren95,
563 gezelter 4167 Author = {Luty, Brock A and Tironi, Ilario G and van Gunsteren, Wilfred F},
564     Journal = {The Journal of chemical physics},
565     Number = {8},
566     Pages = {3014--3021},
567     Publisher = {AIP Publishing},
568     Title = {Lattice-sum methods for calculating electrostatic interactions in molecular simulations},
569     Volume = {103},
570     Year = {1995}}
571 mlamichh 4114
572     @article{Clarke77,
573 gezelter 4167 Author = {Heyes, David M and Barber, M and Clarke, JHR},
574     Journal = {Journal of the Chemical Society, Faraday Transactions 2: Molecular and Chemical Physics},
575     Number = {7},
576     Pages = {1485--1496},
577     Publisher = {Royal Society of Chemistry},
578     Title = {Molecular dynamics computer simulation of surface properties of crystalline potassium chloride},
579     Volume = {73},
580     Year = {1977}}
581    
582 mlamichh 4114 @article{Perram79,
583 gezelter 4167 Author = {De Leeuw, Simon W and Perram, John W},
584     Journal = {Molecular Physics},
585     Number = {4},
586     Pages = {1313--1322},
587     Publisher = {Taylor \& Francis},
588     Title = {Electrostatic lattice sums for semi-infinite lattices},
589     Volume = {37},
590     Year = {1979}}
591    
592 mlamichh 4114 @article{Wolf92,
593 gezelter 4167 Author = {Wolf, Dieter},
594     Journal = {Physical review letters},
595     Number = {22},
596     Pages = {3315--3318},
597     Title = {Reconstruction of NaCl surfaces from a dipolar solution to the Madelung problem},
598     Volume = {68},
599     Year = {1992}}
600 mlamichh 4114
601 gezelter 4167 @article{Acevedo13,
602     Author = {McCann, Billy W and Acevedo, Orlando},
603     Journal = {Journal of Chemical Theory and Computation},
604     Number = {2},
605     Pages = {944--950},
606     Publisher = {American Chemical Society},
607     Title = {Pairwise Alternatives to Ewald Summation for Calculating Long-Range Electrostatics in Ionic Liquids},
608     Volume = {9},
609     Year = {2013}}
610 mlamichh 4114
611     @article{Space12,
612 gezelter 4167 Author = {Forrest, Katherine A and Pham, Tony and McLaughlin, Keith and Belof, Jonathan L and Stern, Abraham C and Zaworotko, Michael J and Space, Brian},
613     Journal = {The Journal of Physical Chemistry C},
614     Number = {29},
615     Pages = {15538--15549},
616     Publisher = {ACS Publications},
617     Title = {Simulation of the Mechanism of Gas Sorption in a Metal--Organic Framework with Open Metal Sites: Molecular Hydrogen in PCN-61},
618     Volume = {116},
619     Year = {2012}}
620    
621 mlamichh 4114 @article{English08,
622 gezelter 4167 Author = {English, Niall J},
623     Journal = {Molecular Physics},
624     Number = {15},
625     Pages = {1887--1898},
626     Publisher = {Taylor \& Francis},
627     Title = {Effect of electrostatics techniques on the estimation of thermal conductivity via equilibrium molecular dynamics simulation: application to methane hydrate},
628     Volume = {106},
629     Year = {2008}}
630    
631 mlamichh 4114 @article{Lawrence13,
632 gezelter 4167 Author = {Louden, P and Schoenborn, R and Lawrence, CP},
633     Journal = {Fluid Phase Equilibria},
634     Pages = {83--86},
635     Publisher = {Elsevier},
636     Title = {Molecular dynamics simulations of the condensation coefficient of water},
637     Volume = {349},
638     Year = {2013}}
639    
640 mlamichh 4114 @inproceedings{Vergne13,
641 gezelter 4167 Author = {Tokumasu, Takashi and Meurisse, Marie-H{\'e}l{\`e}ne and Fillot, Nicolas and Vergne, Philippe and others},
642     Booktitle = {tribo-lyon2013 Conference},
643     Title = {Molecular Dynamics Study of Lubrication Phenomena of Nanoscale Liquid Bridge between Surfaces},
644     Year = {2013}}
645    
646 mlamichh 4114 @article{Ren06,
647 gezelter 4167 Author = {Golubkov, Pavel A and Ren, Pengyu},
648     Journal = {The Journal of chemical physics},
649     Number = {6},
650     Pages = {064103},
651     Publisher = {AIP Publishing},
652     Title = {Generalized coarse-grained model based on point multipole and Gay-Berne potentials},
653     Volume = {125},
654     Year = {2006}}
655    
656 mlamichh 4114 @article{Essex10,
657 gezelter 4167 Author = {Orsi, Mario and Michel, Julien and Essex, Jonathan W},
658     Journal = {Journal of Physics: Condensed Matter},
659     Number = {15},
660     Pages = {155106},
661     Publisher = {IOP Publishing},
662     Title = {Coarse-grain modelling of DMPC and DOPC lipid bilayers},
663     Volume = {22},
664     Year = {2010}}
665    
666 mlamichh 4114 @article{Essex11,
667 gezelter 4167 Author = {Orsi, Mario and Essex, Jonathan W},
668     Journal = {PloS one},
669     Number = {12},
670     Pages = {e28637},
671     Publisher = {Public Library of Science},
672     Title = {The ELBA force field for coarse-grain modeling of lipid membranes},
673     Volume = {6},
674     Year = {2011}}
675    
676 mlamichh 4114 @article{Ichiye10_1,
677 gezelter 4167 Author = {Te, Jerez A and Tan, Ming-Liang and Ichiye, Toshiko},
678     Journal = {Chemical physics letters},
679     Number = {4},
680     Pages = {218--223},
681     Publisher = {Elsevier},
682     Title = {Solvation of glucose, trehalose, and sucrose by the soft-sticky dipole--quadrupole--octupole water model},
683     Volume = {491},
684     Year = {2010}}
685    
686 mlamichh 4114 @article{Ichiye10_2,
687 gezelter 4167 Author = {Te, Jerez A and Ichiye, Toshiko},
688     Journal = {The Journal of chemical physics},
689     Number = {11},
690     Pages = {114511},
691     Publisher = {AIP Publishing},
692     Title = {Temperature and pressure dependence of the optimized soft-sticky dipole-quadrupole-octupole water model},
693     Volume = {132},
694     Year = {2010}}
695    
696 mlamichh 4114 @article{Ichiye10_3,
697 gezelter 4167 Author = {Te, Jerez A and Ichiye, Toshiko},
698     Journal = {Chemical physics letters},
699     Number = {4},
700     Pages = {219--225},
701     Publisher = {Elsevier},
702     Title = {Understanding structural effects of multipole moments on aqueous solvation of ions using the soft-sticky dipole--quadrupole--octupole water model},
703     Volume = {499},
704     Year = {2010}}
705 mlamichh 4114
706     @article{Gordon07,
707 gezelter 4167 Author = {Schnieders, Michael J and Baker, Nathan A and Ren, Pengyu and Ponder, Jay W},
708     Journal = {The Journal of chemical physics},
709     Number = {12},
710     Pages = {124114},
711     Publisher = {AIP Publishing},
712     Title = {Polarizable atomic multipole solutes in a Poisson-Boltzmann continuum},
713     Volume = {126},
714     Year = {2007}}
715    
716 mlamichh 4114 @article{Smith80,
717 gezelter 4167 Abstract = {Modern standard reference for the Ewald sum.},
718     Added-At = {2007-06-15T17:33:15.000+0200},
719     Author = {{de Leeuw}, Simon W. and Perram, John W. and Smith, E. R.},
720     Biburl = {http://www.bibsonomy.org/bibtex/28ddf5ac6538eb4a6426790403f7c193f/kaigrass},
721     Interhash = {f6d7bd194ef65c5f7142d93eef865ea1},
722     Intrahash = {8ddf5ac6538eb4a6426790403f7c193f},
723     Journal = {Proc. R. Soc. Lond. A},
724     Keywords = {Ewald correction dipole sum,},
725     Pages = {27--56},
726     Timestamp = {2007-06-15T17:33:15.000+0200},
727     Title = {Simulation of electrostatic systems in periodic boundary conditions. {I}. Lattice sums and dielectric constants},
728     Volume = 373,
729     Year = 1980}
730    
731 mlamichh 4114 @article{Lacman65,
732 gezelter 4167 Author = {Lacman, R.},
733     Journal = {Colloq. Int. CNRS},
734     Pages = {195},
735     Volume = 152,
736     Year = 1965}
737 mlamichh 4114
738     @article{PaperI,
739 gezelter 4170 Author = {Lamichhane, Madan and Gezelter, J. Daniel and Newman, Kathie E.},
740 gezelter 4168 Date-Modified = {2014-06-04 15:14:05 +0000},
741 gezelter 4167 Journal = {The Journal of Chemical Physics},
742     Number = {-},
743     Pages = {-},
744     Title = {Real space alternatives to the Ewald Sum. I. Taylor-shifted and Gradient-shifted electrostatics for multipoles},
745     Volume = {-},
746     Year = {2014}}
747 mlamichh 4114
748 mlamichh 4166 @article{fisher53,
749 gezelter 4167 Author = {Fisher, Ronald},
750     Doi = {10.1098/rspa.1953.0064},
751     Eprint = {http://rspa.royalsocietypublishing.org/content/217/1130/295.full.pdf+html},
752     Journal = {Proceedings of the Royal Society of London. Series A. Mathematical and Physical Sciences},
753     Number = {1130},
754     Pages = {295-305},
755     Title = {Dispersion on a Sphere},
756     Url = {http://rspa.royalsocietypublishing.org/content/217/1130/295.abstract},
757     Volume = {217},
758     Year = {1953},
759     Bdsk-Url-1 = {http://rspa.royalsocietypublishing.org/content/217/1130/295.abstract},
760     Bdsk-Url-2 = {http://dx.doi.org/10.1098/rspa.1953.0064}}
761    
762 mlamichh 4166 @article{Allen91,
763 gezelter 4167 Author = {Allen, F. H. and Doyle, M. J. and Taylor, R.},
764     Doi = {10.1107/S0108768190010357},
765     Journal = {Acta Crystallographica Section B},
766     Month = {Feb},
767     Number = {1},
768     Pages = {29--40},
769     Title = {{Automated conformational analysis from crystallographic data. 1. A symmetry-modified single-linkage clustering algorithm for three-dimensional pattern recognition}},
770     Url = {http://dx.doi.org/10.1107/S0108768190010357},
771     Volume = {47},
772     Year = {1991},
773     Bdsk-Url-1 = {http://dx.doi.org/10.1107/S0108768190010357}}