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1 mlamichh 4114 %% This BibTeX bibliography file was created using BibDesk.
2     %% http://bibdesk.sourceforge.net/
3    
4    
5 gezelter 4208 %% Created for Dan Gezelter at 2014-08-08 10:43:40 -0400
6 mlamichh 4114
7    
8     %% Saved with string encoding Unicode (UTF-8)
9    
10    
11     @string{cpl = {Chem. Phys. Lett.}}
12    
13 gezelter 4208 @string{jcp = {J. Chem. Phys.}}
14    
15 mlamichh 4114 @string{jctc = {J. Chem. Theory Comput.}}
16    
17     @string{jpcb = {J. Phys. Chem. B}}
18    
19     @string{jpcc = {J. Phys. Chem. C}}
20    
21     @string{mp = {Mol. Phys.}}
22    
23 gezelter 4184 @string{prl = {Phys. Rev. Lett.}}
24 gezelter 4167
25 gezelter 4208
26     @misc{supplemental,
27     Date-Added = {2014-08-08 14:43:15 +0000},
28     Date-Modified = {2014-08-08 14:43:38 +0000},
29     Title = {See Supplementary Material Document No. \underline{\hspace{1in}} for XXX.}}
30    
31     @article{Izvekov:2008wo,
32     Abstract = {A short-range effective potential for long-range electrostatic interactions in homogeneously disordered condensed phase systems has been determined with a novel approach to coarse-graining in interaction space. As opposed to coarse-graining the system resolution, this approach "coarsens" the system's interactions by mapping multiple configurations of an accurate long-range atomistic potential onto a more efficient, short-range effective potential with a force-matching (FM) method. Developing an empirical potential in this manner is fundamentally different from existing strategies because it utilizes condensed-phase (as opposed to gas-phase) atomistic interactions to determine general pair potentials defined on distance meshes (as opposed to fitting predetermined functional forms). The resulting short-range (similar to 10 angstrom) effective potential reproduces structural, dynamical, and many thermodynamic properties of liquid water, ions in water, and hydrophobes in water, with unprecedented accuracy. The effective potential is also shown to be transferable to a nonaqueous molten salt system. With continued development, such effective potentials may provide an accurate and highly efficient alternative to Ewald-based long-range electrostatics methods.},
33     Address = {1155 16TH ST, NW, WASHINGTON, DC 20036 USA},
34     Author = {Izvekov, Sergei and Swanson, Jessica M. J. and Voth, Gregory A.},
35     Date = {APR 17 2008},
36     Date-Added = {2014-08-08 14:42:22 +0000},
37     Date-Modified = {2014-08-08 14:42:22 +0000},
38     Doi = {DOI 10.1021/jp710339n},
39     Journal = jpcb,
40     Pages = {4711-4724},
41     Publisher = {AMER CHEMICAL SOC},
42     Timescited = {0},
43     Title = {Coarse-graining in interaction space: A systematic approach for replacing long-range electrostatics with short-range Potentials},
44     Volume = {112},
45     Year = {2008},
46     Bdsk-Url-1 = {http://dx.doi.org/10.1021/jp710339n}}
47    
48     @article{Impey82,
49     Author = {R.~W. Impey and P.~A. Madden and I.~R. McDonald},
50     Date-Added = {2014-08-08 14:29:07 +0000},
51     Date-Modified = {2014-08-08 14:29:07 +0000},
52     Journal = mp,
53     Number = {3},
54     Pages = {513-539},
55     Title = {Spectroscopic and transport properties of water: \uppercase{M}odel calculations and the interpretation of experimental results},
56     Volume = {46},
57     Year = {1982}}
58    
59 gezelter 4175 @article{Perram88,
60     Author = {J.~W. Perram and H.~G. Petersen and S.~W. {de Leeuw}},
61     Date-Added = {2014-06-06 15:36:28 +0000},
62     Date-Modified = {2014-06-06 15:36:28 +0000},
63 gezelter 4184 Journal = mp,
64 gezelter 4175 Pages = {875-893},
65     Title = {An algorithm for the simulation of condensed matter that grows as the 3/2 power of the number of particles},
66     Volume = {65},
67     Year = {1988}}
68    
69     @book{openmd,
70     Author = {J. Daniel Gezelter and Madan Lamichhane and Joseph Michalka and Patrick Louden and Kelsey M. Stocker and Shenyu Kuang and James Marr and Chunlei Li and Charles F. Vardeman and Teng Lin and Christopher J. Fennell and Xiuquan Sun and Kyle Daily and Yang Zheng and Matthew A. Meineke},
71     Date-Added = {2014-06-06 15:16:05 +0000},
72     Date-Modified = {2014-06-06 15:18:03 +0000},
73     Publisher = {An open source molecular dynamics engine},
74     Title = {OpenMD},
75     Url = {http://openmd.org (accessed 11/13/2013)},
76     Year = {version 2.2, {\tt http://openmd.org} (accessed 4/17/2014)},
77     Bdsk-Url-1 = {http://openmd.org%20(accessed%2011/13/2013)}}
78    
79 gezelter 4170 @article{Nagai01081960,
80     Abstract = {The quadrupole array for the lowest energy of quadrupole interaction in crystals is obtained by generalizing Luttinger and Tisza's theory of dipole interaction. The theory is presented for the two kinds of problems: the simplest case of quadrupole pertaining to a doubly degenerate orbital eg and the other general cases both for the cubic crystals. In the former case, the quadrupole interaction is written in terms of fictitious spins, whence we can get the solution of lowest energy classically, serving to obtain some informations of the orbital ordering in compounds with Mn3+, Cu2+ and Cr2+. In the latter cases, the five components of the quadrupole are totally effective, leading to a rather complicated problem. The classical solution is, however, easily obtained, though somewhat complicated. The quadrupole array of lowest energy in face-centered cubic lattice proves to be realized in molecular crystals N2, N2O, CO2 and CO, which is accompanied with large quadrupole but without or with small dipole moment.},
81     Author = {Nagai, Ojiro and Nakamura, Tuto},
82     Date-Added = {2014-06-04 18:33:25 +0000},
83     Date-Modified = {2014-06-04 18:33:25 +0000},
84     Doi = {10.1143/PTP.24.432},
85     Journal = {Progress of Theoretical Physics},
86     Number = {2},
87     Pages = {432-454},
88     Title = {Quadrupole Interaction in Crystals},
89     Url = {http://ptp.oxfordjournals.org/content/24/2/432.abstract},
90     Volume = {24},
91     Year = {1960},
92     Bdsk-Url-1 = {http://ptp.oxfordjournals.org/content/24/2/432.abstract},
93     Bdsk-Url-2 = {http://dx.doi.org/10.1143/PTP.24.432}}
94    
95     @article{Nagai01091963,
96     Author = {Nagai, Ojiro and Nakamura, Tuto},
97     Date-Added = {2014-06-04 18:33:25 +0000},
98     Date-Modified = {2014-06-04 18:33:25 +0000},
99     Doi = {10.1143/PTP.30.412a},
100     Journal = {Progress of Theoretical Physics},
101     Number = {3},
102     Pages = {412},
103     Title = {Quadrupole Interaction in Crystals},
104     Url = {http://ptp.oxfordjournals.org/content/30/3/412.1.short},
105     Volume = {30},
106     Year = {1963},
107     Bdsk-Url-1 = {http://ptp.oxfordjournals.org/content/30/3/412.1.short},
108     Bdsk-Url-2 = {http://dx.doi.org/10.1143/PTP.30.412a}}
109    
110     @article{LT,
111     Author = {Luttinger, J. M. and Tisza, L.},
112     Date-Added = {2014-06-04 18:33:16 +0000},
113     Date-Modified = {2014-06-04 18:33:16 +0000},
114     Doi = {10.1103/PhysRev.70.954},
115     Issue = {11-12},
116     Journal = {Phys. Rev.},
117     Month = {Dec},
118     Pages = {954--964},
119     Publisher = {American Physical Society},
120     Title = {Theory of Dipole Interaction in Crystals},
121     Url = {http://link.aps.org/doi/10.1103/PhysRev.70.954},
122     Volume = {70},
123     Year = {1946},
124     Bdsk-Url-1 = {http://link.aps.org/doi/10.1103/PhysRev.70.954},
125     Bdsk-Url-2 = {http://dx.doi.org/10.1103/PhysRev.70.954}}
126    
127     @article{LT2,
128     Author = {Luttinger, J. M. and Tisza, Laszo},
129     Date-Added = {2014-06-04 18:33:16 +0000},
130     Date-Modified = {2014-06-04 18:33:16 +0000},
131     Doi = {10.1103/PhysRev.72.257},
132     Issue = {3},
133     Journal = {Phys. Rev.},
134     Month = {Aug},
135     Pages = {257--257},
136     Publisher = {American Physical Society},
137     Title = {Errata: Theory of Dipole Interaction in Crystals [Phys. Rev. 70, 954 (1946)]},
138     Url = {http://link.aps.org/doi/10.1103/PhysRev.72.257},
139     Volume = {72},
140     Year = {1947},
141     Bdsk-Url-1 = {http://link.aps.org/doi/10.1103/PhysRev.72.257},
142     Bdsk-Url-2 = {http://dx.doi.org/10.1103/PhysRev.72.257}}
143    
144     @article{Sauer,
145     Author = {Sauer, J. A.},
146     Date-Added = {2014-06-04 18:33:04 +0000},
147     Date-Modified = {2014-06-04 18:33:04 +0000},
148     Doi = {10.1103/PhysRev.57.142},
149     Issue = {2},
150     Journal = {Phys. Rev.},
151     Pages = {142--146},
152     Publisher = {American Physical Society},
153     Title = {Magnetic Energy Constants of Dipolar Lattices},
154     Url = {http://link.aps.org/doi/10.1103/PhysRev.57.142},
155     Volume = {57},
156     Year = {1940},
157     Bdsk-Url-1 = {http://link.aps.org/doi/10.1103/PhysRev.57.142},
158     Bdsk-Url-2 = {http://dx.doi.org/10.1103/PhysRev.57.142}}
159    
160 gezelter 4168 @article{Chen:2004du,
161     Abstract = {Structural and thermodynamic properties of ionic fluids are related to those of a simpler "mimic" system with short ranged intermolecular interactions in a spatially varying effective field by use of local molecular field (LMF) theory, already successfully applied to nonuniform simple fluids. By consistently using the LMF approximation to describe only the slowly varying part of the Coulomb interaction, which we view as arising from a rigid Gaussian charge distribution with an appropriately chosen width a, exceptionally accurate results can be found. In this paper we study a uniform system of charged hard spheres in a uniform neutralizing background, where these ideas can be presented in their simplest form. At low densities the LMF theory reduces to a generalized version of the Poisson-Boltzmann approximation, but the predicted structure factor satisfies the exact Stillinger-Lovett moment conditions, and with optimal choice of or the lowest order approximation remains accurate for much stronger couplings. At high density and strong couplings the pair correlation function in the uniform mimic system with short ranged interactions is very similar to that of the full ionic system. A simple analytic formula can then describe the difference in internal energy between the ionic system and the associated mimic system.},
162     Address = {1155 16TH ST, NW, WASHINGTON, DC 20036 USA},
163     Author = {Chen, YG and Kaur, C and Weeks, JD},
164     Date = {DEC 23 2004},
165     Date-Added = {2014-06-04 15:12:54 +0000},
166     Date-Modified = {2014-06-04 15:12:54 +0000},
167     Doi = {DOI 10.1021/jp0469261},
168     Journal = jpcb,
169     Pages = {19874-19884},
170     Publisher = {AMER CHEMICAL SOC},
171     Timescited = {5},
172     Title = {Connecting systems with short and long ranged interactions: Local molecular field theory for ionic fluids},
173     Volume = {108},
174     Year = {2004},
175     Bdsk-Url-1 = {http://dx.doi.org/10.1021/jp0469261}}
176    
177     @article{Chen:2006ii,
178     Abstract = {Strong, short-ranged positional correlations involving counterions can induce a net attractive force between negatively charged strands of DNA and lead to the formation of ion pairs in dilute ionic solutions. However, the long range of the Coulomb interactions impedes the development of a simple local picture. We address this general problem by mapping the properties of a nonuniform system with Coulomb interactions onto those of a simpler system with short-ranged intermolecular interactions in an effective external field that accounts for the averaged effects of appropriately chosen long-ranged and slowly varying components of the Coulomb interactions. The remaining short-ranged components combine with the other molecular core interactions and strongly affect pair correlations in dense or strongly coupled systems. We show that pair correlation functions in the effective short-ranged system closely resemble those in the uniform primitive model of ionic solutions and illustrate the formation of ion pairs and clusters at low densities. The theory accurately describes detailed features of the effective attraction between two equally charged walls at strong coupling and intermediate separations of the walls. Analytical results for the minimal coupling strength needed to get any attraction and for the separation at which the attractive force is a maximum are presented.},
179     Address = {2101 CONSTITUTION AVE NW, WASHINGTON, DC 20418 USA},
180     Author = {Chen, YG and Weeks, JD},
181     Date = {MAY 16 2006},
182     Date-Added = {2014-06-04 15:12:54 +0000},
183     Date-Modified = {2014-06-04 15:12:54 +0000},
184     Doi = {DOI 10.1073/pnas.0600282103},
185     Journal = pnas,
186     Keywords = {effective short-ranged model; ion pairing; mean field theory; Poission-Boltzmann},
187     Pages = {7560-7565},
188     Publisher = {NATL ACAD SCIENCES},
189     Timescited = {4},
190     Title = {Local molecular field theory for effective attractions between like charged objects in systems with strong Coulomb interactions},
191     Volume = {103},
192     Year = {2006},
193     Bdsk-Url-1 = {http://dx.doi.org/10.1073/pnas.0600282103}}
194    
195     @article{Denesyuk:2008ez,
196     Abstract = {We propose a simplified version of local molecular field (LMF) theory to treat Coulomb interactions in simulations of ionic fluids. LMF theory relies on splitting the Coulomb potential into a short-ranged part that combines with other short-ranged core interactions and is simulated explicitly. The averaged effects of the remaining long-ranged part are taken into account through a self-consistently determined effective external field. The theory contains an adjustable length parameter sigma that specifies the cutoff distance for the short-ranged interaction. This can be chosen to minimize the errors resulting from the mean-field treatment of the complementary long-ranged part. Here we suggest that in many cases an accurate approximation to the effective field can be obtained directly from the equilibrium charge density given by the Debye theory of screening, thus eliminating the need for a self-consistent treatment. In the limit sigma -> 0, this assumption reduces to the classical Debye approximation. We examine the numerical performance of this approximation for a simple model of a symmetric ionic mixture. Our results for thermodynamic and structural properties of uniform ionic mixtures agree well with similar results of Ewald simulations of the full ionic system. In addition, we have used the simplified theory in a grand-canonical simulation of a nonuniform ionic mixture where an ion has been fixed at the origin. Simulations using short-ranged truncations of the Coulomb interactions alone do not satisfy the exact condition of complete screening of the fixed ion, but this condition is recovered when the effective field is taken into account. We argue that this simplified approach can also be used in the simulations of more complex nonuniform systems. (c) 2008 American Institute of Physics.},
197     Address = {CIRCULATION \& FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1, MELVILLE, NY 11747-4501 USA},
198     Author = {Denesyuk, Natalia A. and Weeks, John D.},
199     Date = {MAR 28 2008},
200     Date-Added = {2014-06-04 15:12:54 +0000},
201     Date-Modified = {2014-06-04 15:12:54 +0000},
202 gezelter 4208 Eid = {124109},
203 gezelter 4168 Journal = jcp,
204 gezelter 4208 Pages = {-},
205 gezelter 4168 Publisher = {AMER INST PHYSICS},
206     Timescited = {0},
207     Title = {A new approach for efficient simulation of {C}oulomb interactions in ionic fluids},
208     Volume = {128},
209     Year = {2008},
210     Bdsk-Url-1 = {http://dx.doi.org/124109}}
211    
212     @article{Rodgers:2006nw,
213     Abstract = {Effective attraction between like-charged walls mediated by counterions is studied using local molecular field (LMF) theory. Monte Carlo simulations of the "mimic system" given by LMF theory, with short-ranged "Coulomb core" interactions in an effective single particle potential incorporating a mean-field average of the long-ranged Coulomb interactions, provide a direct test of the theory, and are in excellent agreement with more complex simulations of the full Coulomb system by Moreira and Netz [Eur. Phys. J. E 8, 33 (2002)]. A simple, generally applicable criterion to determine the consistency parameter sigma(min) needed for accurate use of the LMF theory is presented.},
214     Address = {ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA},
215     Author = {Rodgers, Jocelyn M. and Kaur, Charanbir and Chen, Yng-Gwei and Weeks, John D.},
216     Date = {SEP 1 2006},
217     Date-Added = {2014-06-04 15:12:54 +0000},
218     Date-Modified = {2014-06-04 15:12:54 +0000},
219 gezelter 4208 Eid = {097801},
220 gezelter 4168 Journal = prl,
221 gezelter 4208 Pages = {-},
222 gezelter 4168 Publisher = {AMERICAN PHYSICAL SOC},
223     Timescited = {1},
224     Title = {Attraction between like-charged walls: Short-ranged simulations using local molecular field theory},
225     Volume = {97},
226     Year = {2006},
227     Bdsk-Url-1 = {http://dx.doi.org/097801}}
228    
229     @article{Wu:044107,
230     Author = {Xiongwu Wu and Bernard R. Brooks},
231     Date-Added = {2014-06-04 15:12:16 +0000},
232     Date-Modified = {2014-06-04 15:12:16 +0000},
233     Doi = {10.1063/1.1836733},
234     Eid = {044107},
235     Journal = jcp,
236     Keywords = {Molecular Dynamics Method; Potential Energy Functions},
237     Number = {4},
238     Numpages = {18},
239     Pages = {044107},
240     Publisher = {Aip},
241     Title = {Isotropic Periodic Sum: A Method for the Calculation of Long-Range Interactions},
242     Url = {Http://Link.Aip.Org/Link/?jcp/122/044107/1},
243     Volume = {122},
244     Year = {2005},
245     Bdsk-Url-1 = {Http://Link.Aip.Org/Link/?jcp/122/044107/1},
246     Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.1836733}}
247    
248     @article{Smith82,
249     Author = {W. Smith},
250     Date-Added = {2014-06-04 15:05:56 +0000},
251     Date-Modified = {2014-06-04 15:05:56 +0000},
252     Journal = {CCP5 Information quarterly},
253     Pages = {13-25},
254     Title = {Point multipoles in the \uppercase{E}wald summation},
255     Volume = 4,
256     Year = 1982}
257    
258     @article{Smith98,
259     Author = {W. Smith},
260     Date-Added = {2014-06-04 15:05:56 +0000},
261     Date-Modified = {2014-06-04 15:05:56 +0000},
262     Journal = {CCP5 Information Quarterly},
263     Pages = {18-30},
264     Title = {Point multipoles in the \uppercase{E}wald summation (Revisited)},
265     Volume = {46},
266     Year = {1998}}
267    
268     @article{Ren:2004kx,
269     Author = {Ren, Pengyu and Ponder, Jay W.},
270     Date-Added = {2014-06-04 13:47:47 +0000},
271     Date-Modified = {2014-06-04 13:47:47 +0000},
272     Doi = {10.1021/jp0484332},
273 gezelter 4184 Journal = jpcb,
274 gezelter 4168 Number = {35},
275     Pages = {13427-13437},
276     Title = {Temperature and Pressure Dependence of the AMOEBA Water Model},
277     Url = {http://pubs.acs.org/doi/abs/10.1021/jp0484332},
278     Volume = {108},
279     Year = {2004},
280     Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp0484332},
281     Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp0484332}}
282    
283     @article{Ren:2003uq,
284     Author = {Ren, Pengyu and Ponder, Jay W.},
285     Date-Added = {2014-06-04 13:47:15 +0000},
286     Date-Modified = {2014-06-04 13:58:58 +0000},
287     Doi = {10.1021/jp027815+},
288 gezelter 4184 Journal = jpcb,
289 gezelter 4168 Number = {24},
290     Pages = {5933-5947},
291     Title = {Polarizable Atomic Multipole Water Model for Molecular Mechanics Simulation},
292     Url = {http://pubs.acs.org/doi/abs/10.1021/jp027815\%2B},
293     Volume = {107},
294     Year = {2003},
295     Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp027815%2B},
296     Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp027815+}}
297    
298     @article{Wang:2013fk,
299     Author = {Wang, Lee-Ping and Head-Gordon, Teresa and Ponder, Jay W. and Ren, Pengyu and Chodera, John D. and Eastman, Peter K. and Martinez, Todd J. and Pande, Vijay S.},
300     Date-Added = {2014-06-04 13:44:11 +0000},
301     Date-Modified = {2014-06-04 13:44:11 +0000},
302     Doi = {10.1021/jp403802c},
303 gezelter 4184 Journal = jpcb,
304 gezelter 4168 Number = {34},
305     Pages = {9956-9972},
306     Title = {Systematic Improvement of a Classical Molecular Model of Water},
307     Url = {http://pubs.acs.org/doi/abs/10.1021/jp403802c},
308     Volume = {117},
309     Year = {2013},
310     Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp403802c},
311     Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp403802c}}
312    
313 gezelter 4167 @incollection{Wolf95,
314     Author = {Wolf, D.},
315     Booktitle = {Computer Simulation Studies in Condensed-Matter Physics VIII},
316     Date-Added = {2014-05-20 18:53:22 +0000},
317     Date-Modified = {2014-05-20 18:53:22 +0000},
318     Doi = {10.1007/978-3-642-79991-4_6},
319     Editor = {Landau, DavidP. and Mon, K.K. and Sch{\"u}ttler, Heinz-Bernd},
320     Isbn = {978-3-642-79993-8},
321     Language = {English},
322     Pages = {57-68},
323     Publisher = {Springer Berlin Heidelberg},
324     Series = {Springer Proceedings in Physics},
325     Title = {Simulation of Ionic Surfaces from an Absolutely Convergent Solution of the Madelung Problem},
326     Url = {http://dx.doi.org/10.1007/978-3-642-79991-4_6},
327     Volume = {80},
328     Year = {1995},
329     Bdsk-Url-1 = {http://dx.doi.org/10.1007/978-3-642-79991-4_6}}
330    
331     @article{Parry:1976fq,
332     Author = {D.E. Parry},
333     Date-Added = {2014-05-20 18:44:42 +0000},
334     Date-Modified = {2014-05-20 18:44:42 +0000},
335     Doi = {http://dx.doi.org/10.1016/0039-6028(76)90102-3},
336     Issn = {0039-6028},
337     Journal = {Surface Science},
338     Key = {tagkey1976195},
339     Number = {1},
340     Pages = {195},
341     Title = {Errata},
342     Url = {http://www.sciencedirect.com/science/article/pii/0039602876901023},
343     Volume = {54},
344     Year = {1976},
345     Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/pii/0039602876901023},
346     Bdsk-Url-2 = {http://dx.doi.org/10.1016/0039-6028(76)90102-3}}
347    
348     @article{Parry:1975if,
349     Author = {D.E. Parry},
350     Date-Added = {2014-05-20 18:42:44 +0000},
351     Date-Modified = {2014-05-20 18:42:44 +0000},
352     Doi = {http://dx.doi.org/10.1016/0039-6028(75)90362-3},
353     Issn = {0039-6028},
354     Journal = {Surface Science},
355     Number = {2},
356     Pages = {433 - 440},
357     Title = {The electrostatic potential in the surface region of an ionic crystal},
358     Url = {http://www.sciencedirect.com/science/article/pii/0039602875903623},
359     Volume = {49},
360     Year = {1975},
361     Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/pii/0039602875903623},
362     Bdsk-Url-2 = {http://dx.doi.org/10.1016/0039-6028(75)90362-3}}
363    
364     @article{Essmann:1995pb,
365     Author = {Essmann, Ulrich and Perera, Lalith and Berkowitz, Max L. and Darden, Tom and Lee, Hsing and Pedersen, Lee G.},
366     Date-Added = {2014-05-20 17:33:26 +0000},
367     Date-Modified = {2014-05-20 17:33:26 +0000},
368     Doi = {http://dx.doi.org/10.1063/1.470117},
369 gezelter 4184 Journal = jcp,
370 gezelter 4167 Number = {19},
371     Pages = {8577-8593},
372     Title = {A smooth particle mesh Ewald method},
373     Url = {http://scitation.aip.org/content/aip/journal/jcp/103/19/10.1063/1.470117},
374     Volume = {103},
375     Year = {1995},
376     Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/103/19/10.1063/1.470117},
377     Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.470117}}
378    
379     @article{Ponder:2010vl,
380     Author = {Ponder, Jay W. and Wu, Chuanjie and Ren, Pengyu and Pande, Vijay S. and Chodera, John D. and Schnieders, Michael J. and Haque, Imran and Mobley, David L. and Lambrecht, Daniel S. and DiStasio, Robert A. and Head-Gordon, Martin and Clark, Gary N. I. and Johnson, Margaret E. and Head-Gordon, Teresa},
381     Date-Added = {2014-05-20 17:32:49 +0000},
382     Date-Modified = {2014-05-20 17:32:49 +0000},
383     Doi = {10.1021/jp910674d},
384 gezelter 4184 Journal = jpcb,
385 gezelter 4167 Note = {PMID: 20136072},
386     Number = {8},
387     Pages = {2549-2564},
388     Title = {Current Status of the AMOEBA Polarizable Force Field},
389     Url = {http://pubs.acs.org/doi/abs/10.1021/jp910674d},
390     Volume = {114},
391     Year = {2010},
392     Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp910674d},
393     Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp910674d}}
394    
395     @article{Spohr:1997sf,
396     Author = {Spohr, E.},
397     Date-Added = {2014-05-20 17:32:27 +0000},
398     Date-Modified = {2014-05-20 17:32:27 +0000},
399     Doi = {http://dx.doi.org/10.1063/1.474295},
400 gezelter 4184 Journal = jcp,
401 gezelter 4167 Number = {16},
402     Pages = {6342-6348},
403     Title = {Effect of electrostatic boundary conditions and system size on the interfacial properties of water and aqueous solutions},
404     Url = {http://scitation.aip.org/content/aip/journal/jcp/107/16/10.1063/1.474295},
405     Volume = {107},
406     Year = {1997},
407     Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/107/16/10.1063/1.474295},
408     Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.474295}}
409    
410     @article{Shi:2013ij,
411     Author = {Shi, Wei and Luebke, David R.},
412     Date-Added = {2014-05-20 17:31:47 +0000},
413     Date-Modified = {2014-05-20 17:31:47 +0000},
414     Doi = {10.1021/la400226g},
415     Journal = {Langmuir},
416     Number = {18},
417     Pages = {5563-5572},
418     Title = {Enhanced Gas Absorption in the Ionic Liquid 1-n-Hexyl-3-methylimidazolium Bis(trifluoromethylsulfonyl)amide ([hmim][Tf2N]) Confined in Silica Slit Pores: A Molecular Simulation Study},
419     Url = {http://pubs.acs.org/doi/abs/10.1021/la400226g},
420     Volume = {29},
421     Year = {2013},
422     Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/la400226g},
423     Bdsk-Url-2 = {http://dx.doi.org/10.1021/la400226g}}
424    
425     @article{Zahn:2002hc,
426     Author = {Zahn, Dirk and Schilling, Bernd and Kast, Stefan M.},
427     Date-Added = {2014-05-20 17:31:28 +0000},
428     Date-Modified = {2014-05-20 17:31:28 +0000},
429     Doi = {10.1021/jp025949h},
430 gezelter 4184 Journal = jpcb,
431 gezelter 4167 Number = {41},
432     Pages = {10725-10732},
433     Title = {Enhancement of the Wolf Damped Coulomb Potential:  Static, Dynamic, and Dielectric Properties of Liquid Water from Molecular Simulation},
434     Url = {http://pubs.acs.org/doi/abs/10.1021/jp025949h},
435     Volume = {106},
436     Year = {2002},
437     Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/jp025949h},
438     Bdsk-Url-2 = {http://dx.doi.org/10.1021/jp025949h}}
439    
440     @article{Rhee:1989kl,
441     Author = {Rhee, Y.-J. and Halley, J. W. and Hautman, Joseph and Rahman, A.},
442     Date-Added = {2014-05-20 17:29:57 +0000},
443     Date-Modified = {2014-05-20 17:29:59 +0000},
444     Doi = {10.1103/PhysRevB.40.36},
445     Issue = {1},
446     Journal = {Phys. Rev. B},
447     Month = {Jul},
448     Numpages = {0},
449     Pages = {36--42},
450     Publisher = {American Physical Society},
451     Title = {Ewald methods in molecular dynamics for systems of finite extent in one of three dimensions},
452     Url = {http://link.aps.org/doi/10.1103/PhysRevB.40.36},
453     Volume = {40},
454     Year = {1989},
455     Bdsk-Url-1 = {http://link.aps.org/doi/10.1103/PhysRevB.40.36},
456     Bdsk-Url-2 = {http://dx.doi.org/10.1103/PhysRevB.40.36}}
457    
458     @article{Yeh:1999oq,
459     Author = {Yeh, In-Chul and Berkowitz, Max L.},
460     Date-Added = {2014-05-20 17:29:25 +0000},
461     Date-Modified = {2014-05-20 17:29:25 +0000},
462     Doi = {http://dx.doi.org/10.1063/1.479595},
463 gezelter 4184 Journal = jcp,
464 gezelter 4167 Number = {7},
465     Pages = {3155-3162},
466     Title = {Ewald summation for systems with slab geometry},
467     Url = {http://scitation.aip.org/content/aip/journal/jcp/111/7/10.1063/1.479595},
468     Volume = {111},
469     Year = {1999},
470     Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/111/7/10.1063/1.479595},
471     Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.479595}}
472    
473     @article{Wolf:1999dn,
474     Author = {Wolf, D. and Keblinski, P. and Phillpot, S. R. and Eggebrecht, J.},
475     Date-Added = {2014-05-20 17:28:54 +0000},
476     Date-Modified = {2014-05-20 17:28:54 +0000},
477     Doi = {http://dx.doi.org/10.1063/1.478738},
478 gezelter 4184 Journal = jcp,
479 gezelter 4167 Number = {17},
480     Pages = {8254-8282},
481     Title = {Exact method for the simulation of Coulombic systems by spherically truncated, pairwise r−1 summation},
482     Url = {http://scitation.aip.org/content/aip/journal/jcp/110/17/10.1063/1.478738},
483     Volume = {110},
484     Year = {1999},
485     Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/110/17/10.1063/1.478738},
486     Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.478738}}
487    
488     @article{Kannam:2012rr,
489     Author = {Kannam, Sridhar Kumar and Todd, B. D. and Hansen, J. S. and Daivis, Peter J.},
490     Date-Added = {2014-05-20 17:28:19 +0000},
491     Date-Modified = {2014-05-20 17:28:19 +0000},
492     Doi = {http://dx.doi.org/10.1063/1.4730167},
493     Eid = 244704,
494 gezelter 4184 Journal = jcp,
495 gezelter 4167 Number = {24},
496     Pages = {-},
497     Title = {Interfacial slip friction at a fluid-solid cylindrical boundary},
498     Url = {http://scitation.aip.org/content/aip/journal/jcp/136/24/10.1063/1.4730167},
499     Volume = {136},
500     Year = {2012},
501     Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/136/24/10.1063/1.4730167},
502     Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.4730167}}
503    
504     @article{Fennell:2006lq,
505     Author = {Fennell, Christopher J. and Gezelter, J. Daniel},
506     Date-Added = {2014-05-20 17:27:55 +0000},
507     Date-Modified = {2014-05-20 17:27:55 +0000},
508     Doi = {http://dx.doi.org/10.1063/1.2206581},
509     Eid = 234104,
510 gezelter 4184 Journal = jcp,
511 gezelter 4167 Number = {23},
512     Pages = {-},
513     Title = {Is the Ewald summation still necessary? Pairwise alternatives to the accepted standard for long-range electrostatics},
514     Url = {http://scitation.aip.org/content/aip/journal/jcp/124/23/10.1063/1.2206581},
515     Volume = {124},
516     Year = {2006},
517     Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/124/23/10.1063/1.2206581},
518     Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.2206581}}
519    
520     @article{Darden:1993pd,
521     Author = {Darden, Tom and York, Darrin and Pedersen, Lee},
522     Date-Added = {2014-05-20 17:27:18 +0000},
523     Date-Modified = {2014-05-20 17:27:18 +0000},
524     Doi = {http://dx.doi.org/10.1063/1.464397},
525 gezelter 4184 Journal = jcp,
526 gezelter 4167 Number = {12},
527     Pages = {10089-10092},
528     Title = {Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems},
529     Url = {http://scitation.aip.org/content/aip/journal/jcp/98/12/10.1063/1.464397},
530     Volume = {98},
531     Year = {1993},
532     Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/98/12/10.1063/1.464397},
533     Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.464397}}
534    
535     @article{Clarke:1986eu,
536     Author = {Clarke, J. H. R. and Smith, W. and Woodcock, L. V.},
537     Date-Added = {2014-05-20 17:26:40 +0000},
538     Date-Modified = {2014-05-20 17:26:40 +0000},
539     Doi = {http://dx.doi.org/10.1063/1.450391},
540 gezelter 4184 Journal = jcp,
541 gezelter 4167 Number = {4},
542     Pages = {2290-2294},
543     Title = {Short range effective potentials for ionic fluids},
544     Url = {http://scitation.aip.org/content/aip/journal/jcp/84/4/10.1063/1.450391},
545     Volume = {84},
546     Year = {1986},
547     Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/84/4/10.1063/1.450391},
548     Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.450391}}
549    
550     @article{Fukuda:2013sf,
551     Author = {Fukuda, Ikuo},
552     Date-Added = {2014-05-20 17:25:01 +0000},
553     Date-Modified = {2014-05-20 17:25:01 +0000},
554     Doi = {http://dx.doi.org/10.1063/1.4827055},
555     Eid = 174107,
556 gezelter 4184 Journal = jcp,
557 gezelter 4167 Number = {17},
558     Pages = {-},
559     Title = {Zero-multipole summation method for efficiently estimating electrostatic interactions in molecular system},
560     Url = {http://scitation.aip.org/content/aip/journal/jcp/139/17/10.1063/1.4827055},
561     Volume = {139},
562     Year = {2013},
563     Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/139/17/10.1063/1.4827055},
564     Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.4827055}}
565    
566 gezelter 4184 @incollection{Woodcock75,
567 gezelter 4208 Author = {Woodcock, L.V.},
568     Booktitle = {Advances in Molten Salt Chemistry},
569     Doi = {10.1007/978-1-4615-8270-0_1},
570     Editor = {Braunstein, J. and Mamantov, Gleb and Smith, G.P.},
571     Isbn = {978-1-4615-8272-4},
572     Language = {English},
573     Pages = {1-74},
574     Publisher = {Springer US},
575     Title = {Molecular Dynamics Calculations on Molten Ionic Salts},
576     Url = {http://dx.doi.org/10.1007/978-1-4615-8270-0_1},
577     Year = {1975},
578     Bdsk-Url-1 = {http://dx.doi.org/10.1007/978-1-4615-8270-0_1}}
579 gezelter 4167
580 gezelter 4208 @article{Takada94,
581     Author = {Shimada, Jiro and Kaneko, Hiroki and Takada, Toshikazu},
582     Doi = {10.1002/jcc.540150105},
583     Issn = {1096-987X},
584     Journal = {Journal of Computational Chemistry},
585     Number = {1},
586     Pages = {28--43},
587     Publisher = {John Wiley & Sons, Inc.},
588     Title = {Performance of fast multipole methods for calculating electrostatic interactions in biomacromolecular simulations},
589     Url = {http://dx.doi.org/10.1002/jcc.540150105},
590     Volume = {15},
591     Year = {1994},
592     Bdsk-Url-1 = {http://dx.doi.org/10.1002/jcc.540150105}}
593 gezelter 4167
594 gezelter 4208 @article{Takada93,
595     Author = {Shimada, Jiro and Kaneko, Hiroki and Takada, Toshikazu},
596     Doi = {10.1002/jcc.540140712},
597     Issn = {1096-987X},
598     Journal = {J. Comp. Chem.},
599     Number = {7},
600     Pages = {867--878},
601     Publisher = {John Wiley & Sons, Inc.},
602     Title = {Efficient calculations of coulombic interactions in biomolecular simulations with periodic boundary conditions},
603     Url = {http://dx.doi.org/10.1002/jcc.540140712},
604     Volume = {14},
605     Year = {1993},
606     Bdsk-Url-1 = {http://dx.doi.org/10.1002/jcc.540140712}}
607 gezelter 4184
608 mlamichh 4114 @article{Gunsteren94,
609 gezelter 4208 Author = {Luty, Brock A. and Davis, Malcolm E. and Tironi, Ilario G. and Van Gunsteren, Wilfred F.},
610     Doi = {10.1080/08927029408022004},
611     Journal = {Mol. Simul.},
612     Number = {1},
613     Pages = {11-20},
614     Title = {A Comparison of Particle-Particle, Particle-Mesh and Ewald Methods for Calculating Electrostatic Interactions in Periodic Molecular Systems},
615     Url = {http://dx.doi.org/10.1080/08927029408022004},
616     Volume = {14},
617     Year = {1994},
618     Bdsk-Url-1 = {http://dx.doi.org/10.1080/08927029408022004}}
619 gezelter 4167
620 mlamichh 4114 @article{Gunsteren95,
621 gezelter 4208 Author = {Luty, Brock A. and Tironi, Ilario G. and van Gunsteren, Wilfred F.},
622     Doi = {http://dx.doi.org/10.1063/1.470490},
623     Journal = jcp,
624     Number = {8},
625     Pages = {3014-3021},
626     Title = {Lattice‐sum methods for calculating electrostatic interactions in molecular simulations},
627     Url = {http://scitation.aip.org/content/aip/journal/jcp/103/8/10.1063/1.470490},
628     Volume = {103},
629     Year = {1995},
630     Bdsk-Url-1 = {http://scitation.aip.org/content/aip/journal/jcp/103/8/10.1063/1.470490},
631     Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.470490}}
632 mlamichh 4114
633 gezelter 4208 @article{Clarke77,
634     Abstract = {Computer simulation of the (100) face of crystalline potassium chloride has been achieved using the method of molecular dynamics and a lamina model of thickness 10 ionic layers. The basic cell contained 360 ions{,} interacting via a Tosi-Fumi potential. A solution has been obtained for the long range correction to the Coulomb potential for an ionic lamina. This differs significantly from the solution for a 3-dimensional lattice.Surface distortion{,} surface energy and stress have been evaluated and agree well with experiment and previous model calculations. The ratios of surface mean square amplitudes of vibration perpendicular to the surface divided by the bulk values show an approximately 25\% anharmonic enhancement over previous calculations. The layerwise velocity autocorrelation functions yield power spectra featuring a peak for the surface mono-layer at 75 cm which compares favourably with the frequency of surface acoustic modes predicted by previous calculations.},
635     Author = {Heyes, D. M. and Barber, M. and Clarke, J. H. R.},
636     Doi = {10.1039/F29777301485},
637     Issue = {7},
638     Journal = {J. Chem. Soc.{,} Faraday Trans. 2},
639     Pages = {1485-1496},
640     Publisher = {The Royal Society of Chemistry},
641     Title = {Molecular dynamics computer simulation of surface properties of crystalline potassium chloride},
642     Url = {http://dx.doi.org/10.1039/F29777301485},
643     Volume = {73},
644     Year = {1977},
645     Bdsk-Url-1 = {http://dx.doi.org/10.1039/F29777301485}}
646 gezelter 4167
647 mlamichh 4114 @article{Perram79,
648 gezelter 4167 Author = {De Leeuw, Simon W and Perram, John W},
649 gezelter 4184 Journal = mp,
650 gezelter 4167 Number = {4},
651     Pages = {1313--1322},
652     Publisher = {Taylor \& Francis},
653     Title = {Electrostatic lattice sums for semi-infinite lattices},
654     Volume = {37},
655     Year = {1979}}
656    
657 gezelter 4184 @article{Smith80,
658 gezelter 4208 Abstract = {The effective interactions of ions, dipoles and higher-order multipoles under periodic boundary conditions are calculated where the array of periodic replications forms an infinite sphere surrounded by a vacuum. Discrepancies between the results of different methods of calculation are resolved and some shape-dependent effects are discussed briefly. In a simulation under these periodic boundary conditions, the net Hamiltonian contains a positive term proportional to the square of the net dipole moment of the configuration. Surrounding the infinite sphere by a continuum of dielectric constant $\epsilon'$ changes this positive term, the coefficient being zero as $\epsilon'\rightarrow\infty$. We report on the simulation of a dense fluid of hard spheres with embedded point dipoles; simulations are made for different values of $\epsilon'$, showing how the Kirkwood g-factor and the long-range part of h$_\Delta$(r) depend on $\epsilon'$ in a finite simulation. We show how this dependence on $\epsilon'$ nonetheless leads to a dielectric constant for the system that is independent of $\epsilon'$. In particular, the Clausius-Mosotti and Kirkwood formulae for the dielectric constant $\epsilon$ of the system give consistent values.},
659     Author = {{de Leeuw}, S. W. and Perram, J. W. and Smith, E. R.},
660     Doi = {10.1098/rspa.1980.0135},
661     Journal = {Proceedings of the Royal Society of London. A. Mathematical and Physical Sciences},
662     Number = {1752},
663     Pages = {27-56},
664     Title = {Simulation of Electrostatic Systems in Periodic Boundary Conditions. I. Lattice Sums and Dielectric Constants},
665     Url = {http://rspa.royalsocietypublishing.org/content/373/1752/27.abstract},
666     Volume = {373},
667     Year = {1980},
668     Bdsk-Url-1 = {http://rspa.royalsocietypublishing.org/content/373/1752/27.abstract},
669     Bdsk-Url-2 = {http://dx.doi.org/10.1098/rspa.1980.0135}}
670 gezelter 4184
671 mlamichh 4114 @article{Wolf92,
672 gezelter 4167 Author = {Wolf, Dieter},
673 gezelter 4184 Journal = prl,
674 gezelter 4167 Number = {22},
675     Pages = {3315--3318},
676     Title = {Reconstruction of NaCl surfaces from a dipolar solution to the Madelung problem},
677     Volume = {68},
678     Year = {1992}}
679 mlamichh 4114
680 gezelter 4167 @article{Acevedo13,
681     Author = {McCann, Billy W and Acevedo, Orlando},
682 gezelter 4184 Journal = jctc,
683 gezelter 4167 Number = {2},
684     Pages = {944--950},
685     Publisher = {American Chemical Society},
686     Title = {Pairwise Alternatives to Ewald Summation for Calculating Long-Range Electrostatics in Ionic Liquids},
687     Volume = {9},
688     Year = {2013}}
689 mlamichh 4114
690     @article{Space12,
691 gezelter 4167 Author = {Forrest, Katherine A and Pham, Tony and McLaughlin, Keith and Belof, Jonathan L and Stern, Abraham C and Zaworotko, Michael J and Space, Brian},
692 gezelter 4184 Journal = jpcc,
693 gezelter 4167 Number = {29},
694     Pages = {15538--15549},
695     Publisher = {ACS Publications},
696     Title = {Simulation of the Mechanism of Gas Sorption in a Metal--Organic Framework with Open Metal Sites: Molecular Hydrogen in PCN-61},
697     Volume = {116},
698     Year = {2012}}
699    
700 mlamichh 4114 @article{English08,
701 gezelter 4167 Author = {English, Niall J},
702 gezelter 4184 Journal = mp,
703 gezelter 4167 Number = {15},
704     Pages = {1887--1898},
705     Publisher = {Taylor \& Francis},
706     Title = {Effect of electrostatics techniques on the estimation of thermal conductivity via equilibrium molecular dynamics simulation: application to methane hydrate},
707     Volume = {106},
708     Year = {2008}}
709    
710 mlamichh 4114 @article{Lawrence13,
711 gezelter 4167 Author = {Louden, P and Schoenborn, R and Lawrence, CP},
712     Journal = {Fluid Phase Equilibria},
713     Pages = {83--86},
714     Publisher = {Elsevier},
715     Title = {Molecular dynamics simulations of the condensation coefficient of water},
716     Volume = {349},
717     Year = {2013}}
718    
719 gezelter 4184 @article{Vergne13,
720 gezelter 4208 Author = {Takashi Tokumasu and Marie-Helene Meurisse and Nicolas Fillot and Philippe Vergne},
721     Doi = {http://dx.doi.org/10.1016/j.triboint.2012.08.009},
722     Issn = {0301-679X},
723     Journal = {Tribology International},
724     Keywords = {Momentum transport},
725     Number = {0},
726     Pages = {10 - 16},
727     Title = {A molecular dynamics study of a nanoscale liquid bridge under shear},
728     Url = {http://www.sciencedirect.com/science/article/pii/S0301679X12002812},
729     Volume = {59},
730     Year = {2013},
731     Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/pii/S0301679X12002812},
732     Bdsk-Url-2 = {http://dx.doi.org/10.1016/j.triboint.2012.08.009}}
733 gezelter 4167
734 mlamichh 4114 @article{Ren06,
735 gezelter 4167 Author = {Golubkov, Pavel A and Ren, Pengyu},
736 gezelter 4184 Journal = jcp,
737 gezelter 4167 Number = {6},
738     Pages = {064103},
739     Publisher = {AIP Publishing},
740     Title = {Generalized coarse-grained model based on point multipole and Gay-Berne potentials},
741     Volume = {125},
742     Year = {2006}}
743    
744 mlamichh 4114 @article{Essex10,
745 gezelter 4167 Author = {Orsi, Mario and Michel, Julien and Essex, Jonathan W},
746     Journal = {Journal of Physics: Condensed Matter},
747     Number = {15},
748     Pages = {155106},
749     Publisher = {IOP Publishing},
750     Title = {Coarse-grain modelling of DMPC and DOPC lipid bilayers},
751     Volume = {22},
752     Year = {2010}}
753    
754 mlamichh 4114 @article{Essex11,
755 gezelter 4167 Author = {Orsi, Mario and Essex, Jonathan W},
756     Journal = {PloS one},
757     Number = {12},
758     Pages = {e28637},
759     Publisher = {Public Library of Science},
760     Title = {The ELBA force field for coarse-grain modeling of lipid membranes},
761     Volume = {6},
762     Year = {2011}}
763    
764 mlamichh 4114 @article{Ichiye10_1,
765 gezelter 4167 Author = {Te, Jerez A and Tan, Ming-Liang and Ichiye, Toshiko},
766 gezelter 4184 Journal = cpl,
767 gezelter 4167 Number = {4},
768     Pages = {218--223},
769     Publisher = {Elsevier},
770     Title = {Solvation of glucose, trehalose, and sucrose by the soft-sticky dipole--quadrupole--octupole water model},
771     Volume = {491},
772     Year = {2010}}
773    
774 mlamichh 4114 @article{Ichiye10_2,
775 gezelter 4167 Author = {Te, Jerez A and Ichiye, Toshiko},
776 gezelter 4184 Journal = jcp,
777 gezelter 4167 Number = {11},
778     Pages = {114511},
779     Publisher = {AIP Publishing},
780     Title = {Temperature and pressure dependence of the optimized soft-sticky dipole-quadrupole-octupole water model},
781     Volume = {132},
782     Year = {2010}}
783    
784 mlamichh 4114 @article{Ichiye10_3,
785 gezelter 4167 Author = {Te, Jerez A and Ichiye, Toshiko},
786 gezelter 4184 Journal = cpl,
787 gezelter 4167 Number = {4},
788     Pages = {219--225},
789     Publisher = {Elsevier},
790     Title = {Understanding structural effects of multipole moments on aqueous solvation of ions using the soft-sticky dipole--quadrupole--octupole water model},
791     Volume = {499},
792     Year = {2010}}
793 mlamichh 4114
794     @article{Gordon07,
795 gezelter 4167 Author = {Schnieders, Michael J and Baker, Nathan A and Ren, Pengyu and Ponder, Jay W},
796 gezelter 4184 Journal = jcp,
797 gezelter 4167 Number = {12},
798     Pages = {124114},
799     Publisher = {AIP Publishing},
800     Title = {Polarizable atomic multipole solutes in a Poisson-Boltzmann continuum},
801     Volume = {126},
802     Year = {2007}}
803    
804 mlamichh 4114 @article{Lacman65,
805 gezelter 4167 Author = {Lacman, R.},
806 gezelter 4208 Journal = {Colloq. Int. CNRS},
807 gezelter 4167 Pages = {195},
808 gezelter 4208 Title = {Adsorption et croissance cristalline: Nancy, 6-12 Juin 1965},
809 gezelter 4167 Volume = 152,
810 gezelter 4208 Year = {1965}}
811 mlamichh 4114
812     @article{PaperI,
813 gezelter 4170 Author = {Lamichhane, Madan and Gezelter, J. Daniel and Newman, Kathie E.},
814 gezelter 4168 Date-Modified = {2014-06-04 15:14:05 +0000},
815 gezelter 4184 Journal = jcp,
816 gezelter 4167 Number = {-},
817     Pages = {-},
818     Title = {Real space alternatives to the Ewald Sum. I. Taylor-shifted and Gradient-shifted electrostatics for multipoles},
819     Volume = {-},
820     Year = {2014}}
821 mlamichh 4114
822 mlamichh 4166 @article{fisher53,
823 gezelter 4208 Abstract = {Any topological framework requires the development of a theory of errors of characteristic and appropriate mathematical form. The paper develops a form of theory which appears to be appropriate to measurements of position on a sphere. The primary problems of estimation as applied to the true direction, and the precision of observations, are discussed in the subcases which arise. The simultaneous distribution of the amplitude and direction of the vector sum of a number of random unit vectors of given precision, is demonstrated. From this is derived the test of significance appropriate to a worker whose knowledge of precision lies entirely in the internal evidence of the sample. This is the analogue of 'Student's' test in the Gaussian theory of errors. The general formulae obtained are illustrated using measurements of the direction of remanent magnetization in the directly and inversely magnetized lava flows obtained in Iceland by Mr J. Hospers.},
824     Author = {Fisher, Ronald},
825     Doi = {10.1098/rspa.1953.0064},
826     Journal = {Proc. R. Soc. Lond. A},
827     Number = {1130},
828     Pages = {295-305},
829     Title = {Dispersion on a Sphere},
830     Url = {http://rspa.royalsocietypublishing.org/content/217/1130/295.abstract},
831     Volume = {217},
832     Year = {1953},
833     Bdsk-Url-1 = {http://rspa.royalsocietypublishing.org/content/217/1130/295.abstract},
834     Bdsk-Url-2 = {http://dx.doi.org/10.1098/rspa.1953.0064}}
835 gezelter 4167
836 mlamichh 4166 @article{Allen91,
837 gezelter 4208 Author = {Allen, F. H. and Doyle, M. J. and Taylor, R.},
838     Doi = {10.1107/S0108768190010357},
839     Journal = {Acta Crystallographica Section B},
840     Month = {Feb},
841     Number = {1},
842     Pages = {29--40},
843     Title = {{Automated conformational analysis from crystallographic data. 1. A symmetry-modified single-linkage clustering algorithm for three-dimensional pattern recognition}},
844     Url = {http://dx.doi.org/10.1107/S0108768190010357},
845     Volume = {47},
846     Year = {1991},
847     Bdsk-Url-1 = {http://dx.doi.org/10.1107/S0108768190010357}}
848 gezelter 4184
849 gezelter 4187 @article{Ewald21,
850 gezelter 4208 Author = {P.~P. Ewald},
851     Date-Added = {2006-03-13 13:32:04 -0500},
852     Date-Modified = {2006-03-16 22:39:27 -0500},
853     Journal = {Ann. Physik},
854     Pages = {253-287},
855     Title = {Die Berechnung optischer und elektrostatischer Gitterpotential},
856     Volume = {64},
857     Year = {1921}}
858 gezelter 4187
859     @article{deLeeuw80,
860 gezelter 4208 Author = {S.~W. {de Leeuw} and J.~W. Perram and E.~R. Smith},
861     Date-Added = {2006-03-07 10:26:31 -0500},
862     Date-Modified = {2006-03-07 10:30:11 -0500},
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865     Pages = {27-56},
866     Title = {Simulation of Electostatic Systems in Periodic Boundary Conditions. I. Lattice Sums and Dielectric Constants},
867     Volume = {373},
868     Year = {1980}}
869 gezelter 4187
870     @article{Smith81,
871 gezelter 4208 Author = {E.~R. Smith},
872     Date-Added = {2006-03-16 13:47:17 -0500},
873     Date-Modified = {2006-03-16 13:48:34 -0500},
874     Journal = {Proc. R. Soc. London Ser. A},
875     Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Smith_ElectrostaticEnergyInIonicCrystals_81.pdf},
876     Pages = {475-505},
877     Title = {Electrostatic Energy in Ionic Crystals},
878     Volume = {375},
879     Year = {1981}}
880 gezelter 4187
881     @book{Allen87,
882 gezelter 4208 Address = {New York},
883     Author = {M.~P. Allen and D.~J. Tildesley},
884     Date-Modified = {2006-02-15 10:08:08 -0500},
885     Publisher = {Oxford University Press},
886     Title = {Computer Simulations of Liquids},
887     Year = 1987}
888 gezelter 4187
889     @article{Spohr97,
890 gezelter 4208 Author = {E. Spohr},
891     Date-Added = {2006-03-18 18:51:02 -0500},
892     Date-Modified = {2006-03-18 18:52:21 -0500},
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894     Number = {16},
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896     Title = {Effect of electrostatic boundary conditions and system size on the interfacial properties of water and aqueous solutions},
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898     Year = {1997}}
899 gezelter 4187
900     @article{Yeh99,
901 gezelter 4208 Author = {I.-C. Yeh and M.~L. Berkowitz},
902     Date-Added = {2006-03-18 19:24:27 -0500},
903     Date-Modified = {2006-03-18 19:26:08 -0500},
904     Journal = {J. Chem. Phys.},
905     Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Yeh_SlabCorrectionEwald_99.pdf},
906     Number = {7},
907     Pages = {3155-3162},
908     Title = {Ewald summation for systems with slab geometry},
909     Volume = {111},
910     Year = {1999}}
911 gezelter 4187
912     @article{Kawata01,
913 gezelter 4208 Author = {M. Kawata and M. Mikami},
914     Date-Added = {2006-04-26 09:38:01 -0400},
915     Date-Modified = {2006-04-26 09:40:11 -0400},
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921 gezelter 4187
922     @article{Arnold02,
923 gezelter 4208 Author = {A. Arnold and J. {de Joannis} and C. Holm},
924     Date-Added = {2006-04-26 09:36:09 -0400},
925     Date-Modified = {2006-04-26 09:37:52 -0400},
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927     Journal = {J. Chem. Phys.},
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930     Title = {Electrostatics in periodic slab geometries. I},
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932     Year = {2002},
933     Bdsk-Url-1 = {http://dx.doi.org/10.1063/1.1491955}}
934 gezelter 4187
935     @article{deJoannis02,
936 gezelter 4208 Author = {J. {de Joannis} and A. Arnold and C. Holm},
937     Date-Added = {2006-04-26 09:40:15 -0400},
938     Date-Modified = {2006-04-26 09:45:19 -0400},
939     Doi = {10.1063/1.1491954},
940     Journal = {J. Chem. Phys.},
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946     Bdsk-Url-1 = {http://dx.doi.org/10.1063/1.1491954}}
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948     @article{Brodka04,
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959 gezelter 4187
960     @article{Roberts95,
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963     Date-Modified = {2006-03-18 20:13:36 -0500},
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969 gezelter 4187
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980 gezelter 4187
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982 gezelter 4208 Author = {B.~A. Luty and W.~F. {van~Gunsteren}},
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991 gezelter 4187
992     @article{Hunenberger99a,
993 gezelter 4208 Author = {P.~H. H\"{u}nenberger and J.~A. McCammon},
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997     Number = {4},
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1004 gezelter 4208 Author = {P.~H. H\"{u}nenberger and J.~A. McCammon},
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1015     Date-Added = {2006-03-16 09:49:22 -0500},
1016     Date-Modified = {2006-03-16 09:51:17 -0500},
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1018     Journal = {J. Phys. Chem. B},
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1022     Volume = {104},
1023     Year = {2000},
1024     Bdsk-Url-1 = {http://dx.doi.org/10.1021/jp9937757}}
1025 gezelter 4187
1026     @article{Meineke05,
1027 gezelter 4208 Author = {M.~A. Meineke and C.~F. {Vardeman II} and T. Lin and C.~J. Fennell and J.~D. Gezelter},
1028     Date-Modified = {2006-03-05 12:37:31 -0500},
1029     Journal = {J. Comp. Chem.},
1030     Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/MyPapers/Meineke_OOPSE_05.pdf},
1031     Pages = {252-271},
1032     Title = {OOPSE: An Open Source Object-Oriented Parallel Simulation Engine for Molecular Dynamics},
1033     Volume = 26,
1034     Year = 2005}