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Added an explanation on the self term and start of a bibliography file

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# Content
1 \documentclass[%
2 aip,
3 jmp,
4 amsmath,amssymb,
5 preprint,%
6 % reprint,%
7 %author-year,%
8 %author-numerical,%
9 ]{revtex4-1}
10
11 \usepackage{graphicx}% Include figure files
12 \usepackage{dcolumn}% Align table columns on decimal point
13 \usepackage{bm}% bold math
14 \usepackage{natbib}
15 \usepackage[version=3]{mhchem} % this is a great package for formatting chemical reactions
16 \usepackage{url}
17 \usepackage{wrapfig,lipsum,booktabs}
18
19 \begin{document}
20
21 \title[Notes on the Self-Interaction]
22 {Notes on the Self-Interaction}
23
24 \author{J. Daniel Gezelter}
25 \email{gezelter@nd.edu.}
26 \affiliation{Department of Chemistry and Biochemistry, University
27 of Notre Dame, Notre Dame, IN 46556}
28
29 \date{\today}% It is always \today, today,
30 % but any date may be explicitly specified
31 \maketitle
32
33
34 \section{The Self-Interaction}
35 The Wolf summation~\cite{Wolf99} and the later damped shifted force
36 (DSF) extension~\cite{Fennell06} included self-interactions that are
37 handled outside the main pairwise interactions between sites. The
38 self-interaction has contributions from two sources:
39 \begin{itemize}
40 \item The neutralization procedure within the cutoff radius requires a
41 contribution from a charge opposite in sign, but equal in magnitude,
42 to the central charge, which has been spread out over the surface of
43 the cutoff sphere. This term is calculated via a single loop over
44 all charges in the system. For a system of undamped charges, the
45 total self-term is
46 \begin{equation}
47 V_\textrm{self} = - \frac{1}{r_c} \sum_{{\bf a}=1}^N C_{\bf a}^{2}
48 \label{eq:selfTerm}
49 \end{equation}
50 Note that in this potential and in all electrostatic quantities that
51 follow, the standard $4 \pi \epsilon_{0}$ has been omitted for
52 clarity.
53 \item Charge damping with the complementary error function is a
54 partial analogy to the Ewald procedure which splits the interaction
55 into real and reciprocal space sums. The real space sum is retained
56 in the Wolf and DSF methods. The reciprocal space sum is first
57 minimized by folding the largest contribution (the self-interaction)
58 into the self-interaction from charge neutralization of the damped
59 potential. The remainder of the reciprocal space portion is then
60 discarded (as this contributes the largest computational cost and
61 complexity to the Ewald sum). For the damped charge case the
62 complete self-interaction can be written as
63 \begin{equation}
64 V_\textrm{self} = - \left(\frac{2 \alpha}{\sqrt{\pi}}
65 + \frac{\textrm{erfc}(\alpha r_c)}{r_c}\right) \sum_{{\bf a}=1}^N
66 C_{\bf a}^{2}.
67 \label{eq:dampSelfTerm}
68 \end{equation}
69 \end{itemize}
70
71 The extension of DSF electrostatics to point multipoles requires
72 treatment of {\it both} the self-neutralization and reciprocal
73 contributions to the self-interaction for higher order multipoles. In
74 this section we give formulae for these interactions and discuss the
75 relative sizes of these contributions.
76
77 The self-neutralization term is computed by taking the {\it
78 non-shifted} kernel for each interaction, placing a multipole of
79 equal magnitude (but opposite in polarization) on the surface of the
80 cutoff sphere, and averaging over the surface of the cutoff sphere.
81 The reciprocal-space portion is identical to theself-term obtained by
82 Smith and Aguado and Madden for the application of the Ewald sum to
83 multipoles.\cite{Smith82,Smith98,Aguado03} For a given site which
84 posesses a charge, dipole, and multipole, both types of contribution
85 are given in table \ref{tab:tableSelf}.
86
87 \begin{table*}
88 \caption{\label{tab:tableSelf} Self-interaction contributions for
89 site ({\bf a}) that has a charge $(C_{\bf a})$, dipole
90 $(\mathbf{D}_{\bf a})$, and quadrupole $(\mathbf{Q}_{\bf a})$}
91 \begin{ruledtabular}
92 \begin{tabular}{llll}
93 Multipole order & Summed Quantity & Self-neutralization & Reciprocal \\ \hline
94 Charge & $C_{\bf a}^2$ & $-f(r_c)$ & $-\frac{2 \alpha}{\sqrt{\pi}}$ \\
95 Dipole & $|D_{\bf a}|^2$ & $\left( \frac{h(r_c)}{3} + \frac{2
96 g(r_c)}{3 r_c}
97 \right)$ & $-\frac{4 \alpha^3}{3 \sqrt{\pi}}$\\
98 Quadrupole & $2 \text{Tr}[Q_{\bf a}^2] + \left(\text{Tr}[Q_{\bf a}]\right)^2$ &
99 $\frac{1}{15} \left( t(r_c)+ \frac{4 s(r_c)}{r_c} \right)$ & $-\frac{8
100 \alpha^5}{5 \sqrt{\pi}}$ \\
101 Charge-Quadrupole & $-2 C_{\bf a} \text{Tr}[Q_{\bf a}]$ & $\left(
102 \frac{h(r_c)}{3} + \frac{2 g(r_c)}{3 r_c} \right)$& $-\frac{4
103 \alpha^3}{3 \sqrt{\pi}}$ \\
104 \end{tabular}
105 \end{ruledtabular}
106 \end{table*}
107
108 For sites which contain both charges and quadrupoles, the
109 self-interaction includes a cross-interaction between these two
110 multipoles. Symmetry prevents the charge-dipole and dipole-quadrupole
111 interactions from contributing to the self-interaction. The functions
112 that go into the self-neutralization terms are derivatives of Smith's
113 $B_0(r)$ function that have been evaluated at the cutoff distance.
114 For example, $f(r_c) = \left(\frac{d B_0}{dr}\right)_{r_c}$, $g(r_c) =
115 \left(\frac{d^2 B_0}{dr^2}\right)_{r_c}$, and so on.
116
117 As the order of multipoles increases, the reciprocal portion is
118 expected to shrink rapidly. This is expected as the range of the
119 interaction is also decreasing dramatically.
120
121 One final question: Are there torques that arise from the self
122 interactions?
123
124
125 \newpage
126
127 \bibliography{multipole}
128
129 \end{document}