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30 chrisfen 3064
31     \begin{document}
32    
33 gezelter 3066 \title{Pairwise Alternatives to the Ewald Sum: Applications
34     and Extension to Point Multipoles}
35 chrisfen 3064
36 gezelter 3068 \author{Christopher J. Fennell and J. Daniel Gezelter\footnote{Corresponding author. \ Electronic mail: gezelter@nd.edu} \\
37     Department of Chemistry and Biochemistry\\
38     University of Notre Dame\\
39 chrisfen 3064 Notre Dame, Indiana 46556}
40    
41     \date{\today}
42    
43     \maketitle
44     %\doublespacing
45    
46     \begin{abstract}
47 gezelter 3066 The damped, shifted-force electrostatic potential has been shown to
48     give nearly quantitative agreement with smooth particle mesh Ewald for
49     energy differences between configurations as well as for atomic force
50     and molecular torque vectors. In this paper, we extend this technique
51     to handle interactions between electrostatic multipoles. We also
52     investigate the effects of damped and shifted electrostatics on the
53     static, thermodynamic, and dynamic properties of liquid water and
54 chrisfen 3069 various polymorphs of ice. Additionally, we provide a way of choosing
55     the optimal damping strength for a given cutoff radius that reproduces
56     the static dielectric constant in a variety of water models.
57 chrisfen 3064 \end{abstract}
58    
59 gezelter 3068 \newpage
60    
61 chrisfen 3064 %\narrowtext
62    
63     %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
64     % BODY OF TEXT
65     %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
66    
67     \section{Introduction}
68    
69 gezelter 3066 Over the past several years, there has been increasing interest in
70     pairwise methods for correcting electrostatic interactions in computer
71 chrisfen 3064 simulations of condensed molecular
72 gezelter 3066 systems.\cite{Wolf99,Zahn02,Kast03,Beck05,Ma05,Fennell06} These
73     techniques were developed from the observations and efforts of Wolf
74     {\it et al.} and their work towards an $\mathcal{O}(N)$ Coulombic
75     sum.\cite{Wolf99} Wolf's method of cutoff neutralization is able to
76     obtain excellent agreement with Madelung energies in ionic
77     crystals.\cite{Wolf99}
78 chrisfen 3064
79 gezelter 3066 In a recent paper, we showed that simple modifications to Wolf's
80     method could give nearly quantitative agreement with smooth particle
81     mesh Ewald (SPME) for quantities of interest in Monte Carlo
82     (i.e. configurational energy differences) and Molecular Dynamics
83     (i.e. atomic force and molecular torque vectors).\cite{Fennell06} We
84     described the undamped and damped shifted potential (SP) and shifted
85 gezelter 3067 force (SF) techniques. The potential for the damped form of the SP
86 chrisfen 3069 method, where $\alpha$ is the adjustable damping parameter, is given
87     by
88 chrisfen 3064 \begin{equation}
89 chrisfen 3069 V_{\textrm{DSP}}(r) = q_iq_j\left(\frac{\textrm{erfc}\left(\alpha r_{ij}\right)}{r_{ij}}
90 gezelter 3067 - \frac{\textrm{erfc}\left(\alpha R_\textrm{c}\right)}{R_\textrm{c}}\right)
91 chrisfen 3069 \quad r_{ij}\leqslant R_\textrm{c},
92 gezelter 3067 \label{eq:DSPPot}
93     \end{equation}
94     while the damped form of the SF method is given by
95     \begin{equation}
96 chrisfen 3064 \begin{split}
97     V_\mathrm{DSF}(r) = q_iq_j\Biggr{[}&
98 chrisfen 3069 \frac{\mathrm{erfc}\left(\alpha r_{ij}\right)}{r_{ij}}
99 chrisfen 3064 - \frac{\mathrm{erfc}\left(\alpha R_\mathrm{c}\right)}{R_\mathrm{c}} \\
100     &+ \left(\frac{\mathrm{erfc}\left(\alpha R_\mathrm{c}\right)}{R_\mathrm{c}^2}
101     + \frac{2\alpha}{\pi^{1/2}}
102     \frac{\exp\left(-\alpha^2R_\mathrm{c}^2\right)}{R_\mathrm{c}}
103 chrisfen 3069 \right)\left(r_{ij}-R_\mathrm{c}\right)\ \Biggr{]}
104     \quad r_{ij}\leqslant R_\textrm{c}.
105 chrisfen 3064 \label{eq:DSFPot}
106     \end{split}
107     \end{equation}
108 gezelter 3073 In these potentials and in all electrostatic quantities that follow,
109     the standard $4 \pi \epsilon_{0}$ has been omitted for clarity.
110 chrisfen 3064
111 gezelter 3066 The damped SF method is an improvement over the SP method because
112     there is no discontinuity in the forces as particles move out of the
113     cutoff radius ($R_\textrm{c}$). This is accomplished by shifting the
114     forces (and potential) to zero at $R_\textrm{c}$. This is analogous to
115     neutralizing the charge as well as the force effect of the charges
116     within $R_\textrm{c}$.
117    
118     To complete the charge neutralization procedure, a self-neutralization
119 gezelter 3071 term is added to the potential. This term is constant (as long as the
120     charges and cutoff radius do not change), and exists outside the
121 gezelter 3067 normal pair-loop. It can be thought of as a contribution from a
122     charge opposite in sign, but equal in magnitude, to the central
123 chrisfen 3069 charge, which has been spread out over the surface of the cutoff
124 gezelter 3066 sphere. This term is calculated via a single loop over all charges in
125     the system. For the undamped case, the self term can be written as
126 chrisfen 3064 \begin{equation}
127 gezelter 3071 V_\textrm{self} = - \frac{1}{2 R_\textrm{c}} \sum_{i=1}^N q_i^{2},
128 chrisfen 3064 \label{eq:selfTerm}
129     \end{equation}
130     while for the damped case it can be written as
131     \begin{equation}
132 gezelter 3071 V_\textrm{self} = - \left(\frac{\alpha}{\sqrt{\pi}}
133 gezelter 3066 + \frac{\textrm{erfc}(\alpha
134     R_\textrm{c})}{2R_\textrm{c}}\right) \sum_{i=1}^N q_i^{2}.
135 chrisfen 3064 \label{eq:dampSelfTerm}
136     \end{equation}
137     The first term within the parentheses of equation
138 gezelter 3066 (\ref{eq:dampSelfTerm}) is identical to the self term in the Ewald
139 chrisfen 3064 summation, and comes from the utilization of the complimentary error
140     function for electrostatic damping.\cite{deLeeuw80,Wolf99}
141    
142 gezelter 3066 The SF, SP, and Wolf methods operate by neutralizing the total charge
143     contained within the cutoff sphere surrounding each particle. This is
144 gezelter 3071 accomplished by shifting the potential functions to generate image
145     charges on the surface of the cutoff sphere for each pair interaction
146     computed within $R_\textrm{c}$. The damping function applied to the
147     potential is also an important method for accelerating convergence.
148     In the case of systems involving electrostatic distributions of higher
149     order than point charges, the question remains: How will the shifting
150     and damping need to be modified in order to accommodate point
151     multipoles?
152 chrisfen 3064
153 gezelter 3066 \section{Electrostatic Damping for Point
154     Multipoles}\label{sec:dampingMultipoles}
155 chrisfen 3064
156 gezelter 3066 To apply the SF method for systems involving point multipoles, we
157     consider separately the two techniques (shifting and damping) which
158     contribute to the effectiveness of the DSF potential.
159 chrisfen 3064
160 gezelter 3066 As noted above, shifting the potential and forces is employed to
161     neutralize the total charge contained within each cutoff sphere;
162     however, in a system composed purely of point multipoles, each cutoff
163     sphere is already neutral, so shifting becomes unnecessary.
164    
165     In a mixed system of charges and multipoles, the undamped SF potential
166     needs only to shift the force terms between charges and smoothly
167     truncate the multipolar interactions with a switching function. The
168     switching function is required for energy conservation, because a
169     discontinuity will exist in both the potential and forces at
170     $R_\textrm{c}$ in the absence of shifting terms.
171    
172 chrisfen 3069 To dampen the SF potential for point multipoles, we need to incorporate
173 gezelter 3066 the complimentary error function term into the standard forms of the
174     multipolar potentials. We can determine the necessary damping
175 chrisfen 3069 functions by replacing $1/r_{ij}$ with $\mathrm{erfc}(\alpha r_{ij})/r_{ij}$ in the
176 gezelter 3066 multipole expansion. This procedure quickly becomes quite complex
177     with ``two-center'' systems, like the dipole-dipole potential, and is
178     typically approached using spherical harmonics.\cite{Hirschfelder67} A
179     simpler method for determining damped multipolar interaction
180     potentials arises when we adopt the tensor formalism described by
181     Stone.\cite{Stone02}
182    
183     The tensor formalism for electrostatic interactions involves obtaining
184     the multipole interactions from successive gradients of the monopole
185     potential. Thus, tensors of rank zero through two are
186 chrisfen 3064 \begin{equation}
187 gezelter 3066 T = \frac{1}{r_{ij}},
188     \label{eq:tensorRank1}
189 chrisfen 3064 \end{equation}
190     \begin{equation}
191 gezelter 3066 T_\alpha = \nabla_\alpha \frac{1}{r_{ij}},
192     \label{eq:tensorRank2}
193 chrisfen 3064 \end{equation}
194 gezelter 3066 \begin{equation}
195     T_{\alpha\beta} = \nabla_\alpha\nabla_\beta \frac{1}{r_{ij}},
196     \label{eq:tensorRank3}
197     \end{equation}
198     where the form of the first tensor is the charge-charge potential, the
199     second gives the charge-dipole potential, and the third gives the
200     charge-quadrupole and dipole-dipole potentials.\cite{Stone02} Since
201     the force is $-\nabla V$, the forces for each potential come from the
202     next higher tensor.
203 chrisfen 3064
204 chrisfen 3069 As one would do with the multipolar expansion, we can replace $r_{ij}^{-1}$
205     with $\mathrm{erfc}(\alpha r_{ij})/r_{ij}$ to obtain damped forms of the
206 gezelter 3066 electrostatic potentials. Equation \ref{eq:tensorRank2} generates a
207     damped charge-dipole potential,
208 chrisfen 3064 \begin{equation}
209 gezelter 3068 V_\textrm{Dcd} = -q_i\frac{\mathbf{r}_{ij}\cdot\boldsymbol{\mu}_j}{r^3_{ij}}
210     c_1(r_{ij}),
211 chrisfen 3064 \label{eq:dChargeDipole}
212     \end{equation}
213     where $c_1(r_{ij})$ is
214     \begin{equation}
215     c_1(r_{ij}) = \frac{2\alpha r_{ij}e^{-\alpha^2r^2_{ij}}}{\sqrt{\pi}}
216     + \textrm{erfc}(\alpha r_{ij}).
217     \label{eq:c1Func}
218     \end{equation}
219 gezelter 3066 Equation \ref{eq:tensorRank3} generates a damped dipole-dipole potential,
220 chrisfen 3064 \begin{equation}
221 gezelter 3066 V_\textrm{Ddd} = 3\frac{(\boldsymbol{\mu}_i\cdot\mathbf{r}_{ij})
222     (\boldsymbol{\mu}_j\cdot\mathbf{r}_{ij})}{r^5_{ij}}
223     c_2(r_{ij}) -
224     \frac{\boldsymbol{\mu}_i\cdot\boldsymbol{\mu}_j}{r^3_{ij}}
225     c_1(r_{ij}),
226     \label{eq:dampDipoleDipole}
227 chrisfen 3064 \end{equation}
228 gezelter 3066 where
229 chrisfen 3064 \begin{equation}
230     c_2(r_{ij}) = \frac{4\alpha^3r^3_{ij}e^{-\alpha^2r^2_{ij}}}{3\sqrt{\pi}}
231     + \frac{2\alpha r_{ij}e^{-\alpha^2r^2_{ij}}}{\sqrt{\pi}}
232     + \textrm{erfc}(\alpha r_{ij}).
233     \end{equation}
234     Note that $c_2(r_{ij})$ is equal to $c_1(r_{ij})$ plus an additional
235     term. Continuing with higher rank tensors, we can obtain the damping
236     functions for higher multipole potentials and forces. Each subsequent
237     damping function includes one additional term, and we can simplify the
238     procedure for obtaining these terms by writing out the following
239 gezelter 3073 recurrence relation,
240 chrisfen 3064 \begin{equation}
241     c_n(r_{ij}) = \frac{2^n(\alpha r_{ij})^{2n-1}e^{-\alpha^2r^2_{ij}}}
242     {(2n-1)!!\sqrt{\pi}} + c_{n-1}(r_{ij}),
243     \label{eq:dampingGeneratingFunc}
244     \end{equation}
245     where,
246     \begin{equation}
247     m!! \equiv \left\{ \begin{array}{l@{\quad\quad}l}
248     m\cdot(m-2)\ldots 5\cdot3\cdot1 & m > 0\textrm{ odd} \\
249     m\cdot(m-2)\ldots 6\cdot4\cdot2 & m > 0\textrm{ even} \\
250     1 & m = -1\textrm{ or }0,
251     \end{array}\right.
252     \label{eq:doubleFactorial}
253     \end{equation}
254     and $c_0(r_{ij})$ is erfc$(\alpha r_{ij})$. This generating function
255 gezelter 3066 is similar in form to those obtained by Smith and Aguado and Madden
256     for the application of the Ewald sum to
257 chrisfen 3064 multipoles.\cite{Smith82,Smith98,Aguado03}
258    
259     Returning to the dipole-dipole example, the potential consists of a
260 chrisfen 3069 portion dependent upon $r_{ij}^{-5}$ and another dependent upon
261     $r_{ij}^{-3}$. $c_2(r_{ij})$ and $c_1(r_{ij})$ dampen these two parts
262 gezelter 3066 respectively. The forces for the damped dipole-dipole interaction, are
263     obtained from the next higher tensor, $T_{\alpha \beta \gamma}$,
264 chrisfen 3064 \begin{equation}
265     \begin{split}
266     F_\textrm{Ddd} = &15\frac{(\boldsymbol{\mu}_i\cdot\mathbf{r}_{ij})
267     (\boldsymbol{\mu}_j\cdot\mathbf{r}_{ij})\mathbf{r}_{ij}}{r^7_{ij}}
268     c_3(r_{ij})\\ &-
269 chrisfen 3069 3\frac{(\boldsymbol{\mu}_i\cdot\mathbf{r}_{ij})\cdot\boldsymbol{\mu}_j +
270     (\boldsymbol{\mu}_j\cdot\mathbf{r}_{ij})\cdot\boldsymbol{\mu}_i +
271 chrisfen 3064 \boldsymbol{\mu}_i\cdot\boldsymbol{\mu}_j\cdot\mathbf{r}_{ij}}
272     {r^5_{ij}} c_2(r_{ij}),
273     \end{split}
274     \label{eq:dampDipoleDipoleForces}
275     \end{equation}
276 gezelter 3066 Using the tensor formalism, we can dampen higher order multipolar
277     interactions using the same effective damping function that we use for
278 gezelter 3068 charge-charge interactions. This allows us to include multipoles in
279     simulations involving damped electrostatic interactions. In general,
280     if the multipolar potentials are left in $\mathbf{r}_{ij}/r_{ij}$
281     form, instead of reducing them to the more common angular forms which
282 chrisfen 3069 use $\hat{\mathbf{r}}_{ij}$ (or the resultant angles), one may simply replace
283 gezelter 3068 any $1/r_{ij}^{2n+1}$ dependence with $c_n(r_{ij}) / r_{ij}^{2n+1}$ to
284     obtain the damped version of that multipolar potential.
285 chrisfen 3064
286 gezelter 3068 As a practical consideration, we note that the evaluation of the
287     complementary error function inside a pair loop can become quite
288     costly. In practice, we pre-compute the $c_n(r)$ functions over a
289     grid of $r$ values and use cubic spline interpolation to obtain
290     estimates of these functions when necessary. Using this procedure,
291     the computational cost of damped electrostatics is only marginally
292     more costly than the undamped case.
293 chrisfen 3064
294 gezelter 3068 \section{Applications of Damped Shifted-Force Electrostatics}
295 gezelter 3067
296 gezelter 3066 Our earlier work on the SF method showed that it can give nearly
297     quantitive agreement with SPME-derived configurational energy
298     differences. The force and torque vectors in identical configurations
299     are also nearly equivalent under the damped SF potential and
300     SPME.\cite{Fennell06} Although these measures bode well for the
301     performance of the SF method in both Monte Carlo and Molecular
302     Dynamics simulations, it would be helpful to have direct comparisons
303     of structural, thermodynamic, and dynamic quantities. To address
304     this, we performed a detailed analysis of a group of simulations
305     involving water models (both point charge and multipolar) under a
306     number of different simulation conditions.
307 chrisfen 3064
308 gezelter 3066 To provide the most difficult test for the damped SF method, we have
309     chosen a model that has been optimized for use with Ewald sum, and
310     have compared the simulated properties to those computed via Ewald.
311     It is well known that water models parametrized for use with the Ewald
312     sum give calculated properties that are in better agreement with
313     experiment.\cite{vanderSpoel98,Horn04,Rick04} For these reasons, we
314     chose the TIP5P-E water model for our comparisons involving point
315     charges.\cite{Rick04}
316 chrisfen 3064
317     The TIP5P-E water model is a variant of Mahoney and Jorgensen's
318     five-point transferable intermolecular potential (TIP5P) model for
319     water.\cite{Mahoney00} TIP5P was developed to reproduce the density
320 gezelter 3066 maximum in liquid water near 4$^\circ$C. As with many previous point
321     charge water models (such as ST2, TIP3P, TIP4P, SPC, and SPC/E), TIP5P
322     was parametrized using a simple cutoff with no long-range
323     electrostatic
324 chrisfen 3064 correction.\cite{Stillinger74,Jorgensen83,Berendsen81,Berendsen87}
325     Without this correction, the pressure term on the central particle
326     from the surroundings is missing. When this correction is included,
327 gezelter 3073 the system expands to compensate for this added pressure and therefore
328     under-predicts the density of water under standard conditions. In
329     developing TIP5P-E, Rick preserved the geometry and point charge
330     magnitudes in TIP5P and focused on altering the Lennard-Jones
331     parameters to correct the density at 298~K. With the density
332     corrected, he compared common water properties for TIP5P-E using the
333     Ewald sum with TIP5P using a 9~\AA\ cutoff.
334 chrisfen 3064
335 gezelter 3066 In the following sections, we compare these same properties calculated
336     from TIP5P-E using the Ewald sum with TIP5P-E using the damped SF
337     technique. Our comparisons include the SF technique with a 12~\AA\
338     cutoff and an $\alpha$ = 0.0, 0.1, and 0.2~\AA$^{-1}$, as well as a
339     9~\AA\ cutoff with an $\alpha$ = 0.2~\AA$^{-1}$.
340 chrisfen 3064
341 chrisfen 3069 Moving beyond point-charge electrostatics, the soft sticky dipole
342     (SSD) family of water models is the perfect test case for the
343     point-multipolar extension of damped electrostatics. SSD water models
344     are single point molecules that consist of a ``soft'' Lennard-Jones
345     sphere, a point-dipole, and a tetrahedral function for capturing the
346     hydrogen bonding nature of water - a spherical harmonic term for
347     water-water tetrahedral interactions and a point-quadrupole for
348     interactions with surrounding charges. Detailed descriptions of these
349     models can be found in other
350     studies.\cite{Liu96b,Chandra99,Tan03,Fennell04}
351    
352     In deciding which version of the SSD model to use, we need only
353     consider that the SF technique was presented as a pairwise replacement
354     for the Ewald summation. It has been suggested that models
355     parametrized for the Ewald summation (like TIP5P-E) would be
356     appropriate for use with a reaction field and vice versa.\cite{Rick04}
357     Therefore, we decided to test the SSD/RF water model, which was
358     parametrized for use with a reaction field, with the damped
359     electrostatic technique to see how the calculated properties change.
360    
361 gezelter 3066 \subsection{The Density Maximum of TIP5P-E}\label{sec:t5peDensity}
362 chrisfen 3064
363     To compare densities, $NPT$ simulations were performed with the same
364     temperatures as those selected by Rick in his Ewald summation
365     simulations.\cite{Rick04} In order to improve statistics around the
366     density maximum, 3~ns trajectories were accumulated at 0, 12.5, and
367     25$^\circ$C, while 2~ns trajectories were obtained at all other
368 gezelter 3073 temperatures. The average densities were calculated from the latter
369 chrisfen 3064 three-fourths of each trajectory. Similar to Mahoney and Jorgensen's
370     method for accumulating statistics, these sequences were spliced into
371     200 segments, each providing an average density. These 200 density
372     values were used to calculate the average and standard deviation of
373     the density at each temperature.\cite{Mahoney00}
374    
375     \begin{figure}
376     \includegraphics[width=\linewidth]{./figures/tip5peDensities.pdf}
377     \caption{Density versus temperature for the TIP5P-E water model when
378 gezelter 3066 using the Ewald summation (Ref. \citen{Rick04}) and the SF method with
379     varying cutoff radii and damping coefficients. The pressure term from
380     the image-charge shell is larger than that provided by the
381     reciprocal-space portion of the Ewald summation, leading to slightly
382     lower densities. This effect is more visible with the 9~\AA\ cutoff,
383     where the image charges exert a greater force on the central
384 gezelter 3073 particle. The representative error bar for the SF methods shows the
385     average one-sigma uncertainty of the density measurement, and this
386     uncertainty is the same for all the SF curves.}
387 chrisfen 3064 \label{fig:t5peDensities}
388     \end{figure}
389     Figure \ref{fig:t5peDensities} shows the densities calculated for
390 gezelter 3066 TIP5P-E using differing electrostatic corrections overlaid with the
391     experimental values.\cite{CRC80} The densities when using the SF
392     technique are close to, but typically lower than, those calculated
393 chrisfen 3064 using the Ewald summation. These slightly reduced densities indicate
394     that the pressure component from the image charges at R$_\textrm{c}$
395     is larger than that exerted by the reciprocal-space portion of the
396 gezelter 3066 Ewald summation. Bringing the image charges closer to the central
397 chrisfen 3064 particle by choosing a 9~\AA\ R$_\textrm{c}$ (rather than the
398     preferred 12~\AA\ R$_\textrm{c}$) increases the strength of the image
399     charge interactions on the central particle and results in a further
400     reduction of the densities.
401    
402     Because the strength of the image charge interactions has a noticeable
403     effect on the density, we would expect the use of electrostatic
404     damping to also play a role in these calculations. Larger values of
405     $\alpha$ weaken the pair-interactions; and since electrostatic damping
406     is distance-dependent, force components from the image charges will be
407     reduced more than those from particles close the the central
408     charge. This effect is visible in figure \ref{fig:t5peDensities} with
409 chrisfen 3069 the damped SF sums showing slightly higher densities than the undamped
410     case; however, it is clear that the choice of cutoff radius plays a
411     much more important role in the resulting densities.
412 chrisfen 3064
413 gezelter 3066 All of the above density calculations were performed with systems of
414     512 water molecules. Rick observed a system size dependence of the
415     computed densities when using the Ewald summation, most likely due to
416     his tying of the convergence parameter to the box
417 chrisfen 3064 dimensions.\cite{Rick04} For systems of 256 water molecules, the
418     calculated densities were on average 0.002 to 0.003~g/cm$^3$ lower. A
419     system size of 256 molecules would force the use of a shorter
420 gezelter 3066 R$_\textrm{c}$ when using the SF technique, and this would also lower
421     the densities. Moving to larger systems, as long as the R$_\textrm{c}$
422     remains at a fixed value, we would expect the densities to remain
423     constant.
424 chrisfen 3064
425 gezelter 3066 \subsection{Liquid Structure of TIP5P-E}\label{sec:t5peLiqStructure}
426 chrisfen 3064
427 gezelter 3068 The experimentally-determined oxygen-oxygen pair correlation function
428     ($g_\textrm{OO}(r)$) for liquid water has been compared in great
429     detail with predictions of the various common water models, and TIP5P
430     was found to be in better agreement than other rigid, non-polarizable
431     models.\cite{Sorenson00} This excellent agreement with experiment was
432     maintained when Rick developed TIP5P-E.\cite{Rick04} To check whether
433     the choice of using the Ewald summation or the SF technique alters the
434     liquid structure, we calculated this correlation function at 298~K and
435     1~atm for the parameters used in the previous section.
436 chrisfen 3064
437     \begin{figure}
438     \includegraphics[width=\linewidth]{./figures/tip5peGofR.pdf}
439 gezelter 3068 \caption{The oxygen-oxygen pair correlation functions calculated for
440 gezelter 3073 TIP5P-E at 298~K and 1~atm while using the Ewald summation
441 chrisfen 3069 (Ref. \citen{Rick04}) and the SF technique with varying
442 gezelter 3068 parameters. Even with the lower densities obtained using the SF
443     technique, the correlation functions are essentially identical.}
444 chrisfen 3064 \label{fig:t5peGofRs}
445     \end{figure}
446 gezelter 3068 The pair correlation functions calculated for TIP5P-E while using the
447     SF technique with various parameters are overlaid on the same function
448     obtained while using the Ewald summation in
449 chrisfen 3064 figure~\ref{fig:t5peGofRs}. The differences in density do not appear
450 gezelter 3068 to have any effect on the liquid structure as the correlation
451     functions are indistinguishable. These results do indicate that
452 chrisfen 3064 $g_\textrm{OO}(r)$ is insensitive to the choice of electrostatic
453     correction.
454    
455 gezelter 3066 \subsection{Thermodynamic Properties of TIP5P-E}\label{sec:t5peThermo}
456 chrisfen 3064
457 gezelter 3066 In addition to the density and structual features of the liquid, there
458     are a variety of thermodynamic quantities that can be calculated for
459     water and compared directly to experimental values. Some of these
460     additional quantities include the latent heat of vaporization ($\Delta
461     H_\textrm{vap}$), the constant pressure heat capacity ($C_p$), the
462     isothermal compressibility ($\kappa_T$), the thermal expansivity
463     ($\alpha_p$), and the static dielectric constant ($\epsilon$). All of
464     these properties were calculated for TIP5P-E with the Ewald summation,
465 gezelter 3068 so they provide a good set of reference data for comparisons involving
466     the SF technique.
467 chrisfen 3064
468     The $\Delta H_\textrm{vap}$ is the enthalpy change required to
469     transform one mole of substance from the liquid phase to the gas
470     phase.\cite{Berry00} In molecular simulations, this quantity can be
471     determined via
472     \begin{equation}
473     \begin{split}
474 gezelter 3066 \Delta H_\textrm{vap} &= H_\textrm{gas} - H_\textrm{liq} \\
475     &= E_\textrm{gas} - E_\textrm{liq}
476     + P(V_\textrm{gas} - V_\textrm{liq}) \\
477     &\approx -\frac{\langle U_\textrm{liq}\rangle}{N}+ RT,
478 chrisfen 3064 \end{split}
479     \label{eq:DeltaHVap}
480     \end{equation}
481 gezelter 3066 where $E$ is the total energy, $U$ is the potential energy, $P$ is the
482 chrisfen 3064 pressure, $V$ is the volume, $N$ is the number of molecules, $R$ is
483     the gas constant, and $T$ is the temperature.\cite{Jorgensen98b} As
484     seen in the last line of equation (\ref{eq:DeltaHVap}), we can
485     approximate $\Delta H_\textrm{vap}$ by using the ideal gas for the gas
486     state. This allows us to cancel the kinetic energy terms, leaving only
487 gezelter 3068 the $U_\textrm{liq}$ term. Additionally, the $PV$ term for the gas is
488 chrisfen 3064 several orders of magnitude larger than that of the liquid, so we can
489 gezelter 3068 neglect the liquid $PV$ term.
490 chrisfen 3064
491     The remaining thermodynamic properties can all be calculated from
492     fluctuations of the enthalpy, volume, and system dipole
493     moment.\cite{Allen87} $C_p$ can be calculated from fluctuations in the
494     enthalpy in constant pressure simulations via
495     \begin{equation}
496     \begin{split}
497 gezelter 3066 C_p = \left(\frac{\partial H}{\partial T}\right)_{N,P}
498 chrisfen 3064 = \frac{(\langle H^2\rangle - \langle H\rangle^2)}{Nk_BT^2},
499     \end{split}
500     \label{eq:Cp}
501     \end{equation}
502     where $k_B$ is Boltzmann's constant. $\kappa_T$ can be calculated via
503     \begin{equation}
504     \begin{split}
505     \kappa_T = \frac{1}{V}\left(\frac{\partial V}{\partial p}\right)_{N,T}
506 chrisfen 3069 = \frac{({\langle V^2\rangle}_{NPT} - {\langle V\rangle}^{2}_{NPT})}
507 gezelter 3066 {k_BT\langle V\rangle_{NPT}},
508 chrisfen 3064 \end{split}
509     \label{eq:kappa}
510     \end{equation}
511     and $\alpha_p$ can be calculated via
512     \begin{equation}
513     \begin{split}
514     \alpha_p = \frac{1}{V}\left(\frac{\partial V}{\partial T}\right)_{N,P}
515 gezelter 3066 = \frac{(\langle VH\rangle_{NPT}
516     - \langle V\rangle_{NPT}\langle H\rangle_{NPT})}
517     {k_BT^2\langle V\rangle_{NPT}}.
518 chrisfen 3064 \end{split}
519     \label{eq:alpha}
520     \end{equation}
521     Using the Ewald sum under tin-foil boundary conditions, $\epsilon$ can
522     be calculated for systems of non-polarizable substances via
523     \begin{equation}
524     \epsilon = 1 + \frac{\langle M^2\rangle}{3\epsilon_0k_\textrm{B}TV},
525     \label{eq:staticDielectric}
526     \end{equation}
527     where $\epsilon_0$ is the permittivity of free space and $\langle
528     M^2\rangle$ is the fluctuation of the system dipole
529     moment.\cite{Allen87} The numerator in the fractional term in equation
530     (\ref{eq:staticDielectric}) is the fluctuation of the simulation-box
531     dipole moment, identical to the quantity calculated in the
532     finite-system Kirkwood $g$ factor ($G_k$):
533     \begin{equation}
534     G_k = \frac{\langle M^2\rangle}{N\mu^2},
535     \label{eq:KirkwoodFactor}
536     \end{equation}
537     where $\mu$ is the dipole moment of a single molecule of the
538     homogeneous system.\cite{Neumann83,Neumann84,Neumann85} The
539     fluctuation term in both equation (\ref{eq:staticDielectric}) and
540 chrisfen 3069 (\ref{eq:KirkwoodFactor}) is calculated as follows,
541 chrisfen 3064 \begin{equation}
542     \begin{split}
543     \langle M^2\rangle &= \langle\bm{M}\cdot\bm{M}\rangle
544     - \langle\bm{M}\rangle\cdot\langle\bm{M}\rangle \\
545     &= \langle M_x^2+M_y^2+M_z^2\rangle
546     - (\langle M_x\rangle^2 + \langle M_x\rangle^2
547     + \langle M_x\rangle^2).
548     \end{split}
549     \label{eq:fluctBoxDipole}
550     \end{equation}
551     This fluctuation term can be accumulated during the simulation;
552     however, it converges rather slowly, thus requiring multi-nanosecond
553     simulation times.\cite{Horn04} In the case of tin-foil boundary
554     conditions, the dielectric/surface term of the Ewald summation is
555 gezelter 3066 equal to zero. Since the SF method also lacks this
556 chrisfen 3064 dielectric/surface term, equation (\ref{eq:staticDielectric}) is still
557     valid for determining static dielectric constants.
558    
559     All of the above properties were calculated from the same trajectories
560     used to determine the densities in section \ref{sec:t5peDensity}
561     except for the static dielectric constants. The $\epsilon$ values were
562     accumulated from 2~ns $NVE$ ensemble trajectories with system densities
563     fixed at the average values from the $NPT$ simulations at each of the
564     temperatures. The resulting values are displayed in figure
565     \ref{fig:t5peThermo}.
566     \begin{figure}
567     \centering
568 gezelter 3067 \includegraphics[width=5.8in]{./figures/t5peThermo.pdf}
569 chrisfen 3064 \caption{Thermodynamic properties for TIP5P-E using the Ewald summation
570 gezelter 3066 and the SF techniques along with the experimental values. Units
571 chrisfen 3064 for the properties are kcal mol$^{-1}$ for $\Delta H_\textrm{vap}$,
572     cal mol$^{-1}$ K$^{-1}$ for $C_p$, 10$^6$ atm$^{-1}$ for $\kappa_T$,
573     and 10$^5$ K$^{-1}$ for $\alpha_p$. Ewald summation results are from
574 chrisfen 3069 reference \citen{Rick04}. Experimental values for $\Delta
575 chrisfen 3064 H_\textrm{vap}$, $\kappa_T$, and $\alpha_p$ are from reference
576 chrisfen 3069 \citen{Kell75}. Experimental values for $C_p$ are from reference
577     \citen{Wagner02}. Experimental values for $\epsilon$ are from reference
578     \citen{Malmberg56}.}
579 chrisfen 3064 \label{fig:t5peThermo}
580     \end{figure}
581    
582 gezelter 3066 For all of the properties computed, the trends with temperature
583     obtained when using the Ewald summation are reproduced with the SF
584     technique. One noticeable difference between the properties calculated
585     using the two methods are the lower $\Delta H_\textrm{vap}$ values
586     when using SF. This is to be expected due to the direct weakening of
587     the electrostatic interaction through forced neutralization. This
588     results in an increase of the intermolecular potential producing lower
589     values from equation (\ref{eq:DeltaHVap}). The slopes of these values
590     with temperature are similar to that seen using the Ewald summation;
591     however, they are both steeper than the experimental trend, indirectly
592     resulting in the inflated $C_p$ values at all temperatures.
593 chrisfen 3064
594     Above the supercooled regime, $C_p$, $\kappa_T$, and $\alpha_p$ values
595     all overlap within error. As indicated for the $\Delta H_\textrm{vap}$
596 gezelter 3066 and $C_p$ results, the deviations between experiment and simulation in
597     this region are not the fault of the electrostatic summation methods
598     but are due to the geometry and parameters of the TIP5P class of water
599     models. Like most rigid, non-polarizable, point-charge water models,
600     the density decreases with temperature at a much faster rate than
601     experiment (see figure \ref{fig:t5peDensities}). This reduced density
602     leads to the inflated compressibility and expansivity values at higher
603     temperatures seen here in figure \ref{fig:t5peThermo}. Incorporation
604     of polarizability and many-body effects are required in order for
605     water models to overcome differences between simulation-based and
606     experimentally determined densities at these higher
607 chrisfen 3064 temperatures.\cite{Laasonen93,Donchev06}
608    
609     At temperatures below the freezing point for experimental water, the
610 gezelter 3066 differences between SF and the Ewald summation results are more
611 chrisfen 3064 apparent. The larger $C_p$ and lower $\alpha_p$ values in this region
612     indicate a more pronounced transition in the supercooled regime,
613 gezelter 3068 particularly in the case of SF without damping. This points to the
614     onset of a more frustrated or glassy behavior for the undamped and
615     weakly-damped SF simulations of TIP5P-E at temperatures below 250~K
616 chrisfen 3069 than is seen from the Ewald sum at these temperatures. Undamped SF
617     electrostatics has a stronger contribution from nearby charges.
618     Damping these local interactions or using a reciprocal-space method
619     makes the water less sensitive to ordering on a shorter length scale.
620     We can recover nearly quantitative agreement with the Ewald results by
621     increasing the damping constant.
622 chrisfen 3064
623     The final thermodynamic property displayed in figure
624     \ref{fig:t5peThermo}, $\epsilon$, shows the greatest discrepancy
625 gezelter 3066 between the Ewald and SF methods (and with experiment). It is known
626     that the dielectric constant is dependent upon and is quite sensitive
627     to the imposed boundary conditions.\cite{Neumann80,Neumann83} This is
628     readily apparent in the converged $\epsilon$ values accumulated for
629     the SF simulations. Lack of a damping function results in dielectric
630 chrisfen 3064 constants significantly smaller than those obtained using the Ewald
631     sum. Increasing the damping coefficient to 0.2~\AA$^{-1}$ improves the
632     agreement considerably. It should be noted that the choice of the
633 gezelter 3066 ``Ewald coefficient'' ($\kappa$) and real-space cutoff values also
634     have a significant effect on the calculated static dielectric constant
635     when using the Ewald summation. In the simulations of TIP5P-E with the
636     Ewald sum, this screening parameter was tethered to the simulation box
637     size (as was the $R_\textrm{c}$).\cite{Rick04} In general, systems
638     with larger screening parameters reported larger dielectric constant
639 gezelter 3073 values, the same behavior we see here with SF; however, the
640 gezelter 3066 choice of cutoff radius also plays an important role.
641 chrisfen 3064
642 gezelter 3068 \subsection{Optimal Damping Coefficients for Damped
643     Electrostatics}\label{sec:t5peDielectric}
644 chrisfen 3064
645 gezelter 3066 In the previous section, we observed that the choice of damping
646     coefficient plays a major role in the calculated dielectric constant
647     for the SF method. Similar damping parameter behavior was observed in
648     the long-time correlated motions of the NaCl crystal.\cite{Fennell06}
649     The static dielectric constant is calculated from the long-time
650     fluctuations of the system's accumulated dipole moment
651     (Eq. (\ref{eq:staticDielectric})), so it is quite sensitive to the
652     choice of damping parameter. Since $\alpha$ is an adjustable
653     parameter, it would be best to choose optimal damping constants such
654     that any arbitrary choice of cutoff radius will properly capture the
655     dielectric behavior of the liquid.
656 chrisfen 3064
657     In order to find these optimal values, we mapped out the static
658     dielectric constant as a function of both the damping parameter and
659 gezelter 3066 cutoff radius for TIP5P-E and for a point-dipolar water model
660     (SSD/RF). To calculate the static dielectric constant, we performed
661     5~ns $NPT$ calculations on systems of 512 water molecules and averaged
662 gezelter 3073 over the converged region (typically the latter 2.5~ns) of equation
663 gezelter 3066 (\ref{eq:staticDielectric}). The selected cutoff radii ranged from 9,
664     10, 11, and 12~\AA , and the damping parameter values ranged from 0.1
665     to 0.35~\AA$^{-1}$.
666 chrisfen 3064
667     \begin{table}
668     \centering
669 gezelter 3066 \caption{Static dielectric constants for the TIP5P-E and SSD/RF water models at 298~K and 1~atm as a function of damping coefficient $\alpha$ and
670     cutoff radius $R_\textrm{c}$. The color scale ranges from blue (10) to red (100).}
671 chrisfen 3064 \vspace{6pt}
672 gezelter 3066 \begin{tabular}{ lccccccccc }
673 chrisfen 3064 \toprule
674     \toprule
675 gezelter 3066 & \multicolumn{4}{c}{TIP5P-E} & & \multicolumn{4}{c}{SSD/RF} \\
676     & \multicolumn{4}{c}{$R_\textrm{c}$ (\AA )} & & \multicolumn{4}{c}{$R_\textrm{c}$ (\AA )} \\
677     \cmidrule(lr){2-5} \cmidrule(lr){7-10}
678     $\alpha$ (\AA$^{-1}$) & 9 & 10 & 11 & 12 & & 9 & 10 & 11 & 12 \\
679 chrisfen 3064 \midrule
680 gezelter 3066 0.35 & \cellcolor[rgb]{1, 0.788888888888889, 0.5} 87.0 & \cellcolor[rgb]{1, 0.695555555555555, 0.5} 91.2 & \cellcolor[rgb]{1, 0.717777777777778, 0.5} 90.2 & \cellcolor[rgb]{1, 0.686666666666667, 0.5} 91.6 & & \cellcolor[rgb]{1, 0.5, 0.5} 116 & \cellcolor[rgb]{1, 0.5, 0.5} 119.2 & \cellcolor[rgb]{1, 0.5, 0.5} 131.4 & \cellcolor[rgb]{1, 0.5, 0.5} 130 \\
681     & \cellcolor[rgb]{1, 0.892222222222222, 0.5} & \cellcolor[rgb]{1, 0.704444444444444, 0.5} & \cellcolor[rgb]{1, 0.72, 0.5} & \cellcolor[rgb]{1, 0.6666666666667, 0.5} & & \cellcolor[rgb]{1, 0.5, 0.5} & \cellcolor[rgb]{1, 0.5, 0.5} & \cellcolor[rgb]{1, 0.5, 0.5} & \cellcolor[rgb]{1, 0.5, 0.5} \\
682     0.3 & \cellcolor[rgb]{1, 0.995555555555556, 0.5} 77.7 & \cellcolor[rgb]{1, 0.713333333333333, 0.5} 90.4 & \cellcolor[rgb]{1, 0.713333333333333, 0.5} 90.4 & \cellcolor[rgb]{1, 0.646666666666667, 0.5} 93.4 & & \cellcolor[rgb]{1, 0.5, 0.5} 100 & \cellcolor[rgb]{1, 0.5, 0.5} 118.8 & \cellcolor[rgb]{1, 0.5, 0.5} 116 & \cellcolor[rgb]{1, 0.5, 0.5} 122 \\
683     0.275 & \cellcolor[rgb]{0.653333333333333, 1, 0.5} 61.9 & \cellcolor[rgb]{1, 0.933333333333333, 0.5} 80.5 & \cellcolor[rgb]{1, 0.811111111111111, 0.5} 86.0 & \cellcolor[rgb]{1, 0.766666666666667, 0.5} 88 & & \cellcolor[rgb]{1, 1, 0.5} 77.5 & \cellcolor[rgb]{1, 0.5, 0.5} 105 & \cellcolor[rgb]{1, 0.5, 0.5} 118 & \cellcolor[rgb]{1, 0.5, 0.5} 125.2 \\
684     0.25 & \cellcolor[rgb]{0.537777777777778, 1, 0.5} 56.7 & \cellcolor[rgb]{0.795555555555555, 1, 0.5} 68.3 & \cellcolor[rgb]{1, 0.966666666666667, 0.5} 79 & \cellcolor[rgb]{1, 0.704444444444445, 0.5} 90.8 & & \cellcolor[rgb]{0.5, 1, 0.582222222222222} 51.3 & \cellcolor[rgb]{1, 0.993333333333333, 0.5} 77.8 & \cellcolor[rgb]{1, 0.522222222222222, 0.5} 99 & \cellcolor[rgb]{1, 0.5, 0.5} 113 \\
685     0.225 & \cellcolor[rgb]{0.5, 1, 0.768888888888889} 42.9 & \cellcolor[rgb]{0.566666666666667, 1, 0.5} 58.0 & \cellcolor[rgb]{0.693333333333333, 1, 0.5} 63.7 & \cellcolor[rgb]{1, 0.937777777777778, 0.5} 80.3 & & \cellcolor[rgb]{0.5, 0.984444444444444, 1} 31.8 & \cellcolor[rgb]{0.5, 1, 0.586666666666667} 51.1 & \cellcolor[rgb]{1, 0.995555555555556, 0.5} 77.7 & \cellcolor[rgb]{1, 0.5, 0.5} 108.1 \\
686     0.2 & \cellcolor[rgb]{0.5, 0.973333333333333, 1} 31.3 & \cellcolor[rgb]{0.5, 1, 0.842222222222222} 39.6 & \cellcolor[rgb]{0.54, 1, 0.5} 56.8 & \cellcolor[rgb]{0.735555555555555, 1, 0.5} 65.6 & & \cellcolor[rgb]{0.5, 0.698666666666667, 1} 18.94 & \cellcolor[rgb]{0.5, 0.946666666666667, 1} 30.1 & \cellcolor[rgb]{0.5, 1, 0.704444444444445} 45.8 & \cellcolor[rgb]{0.893333333333333, 1, 0.5} 72.7 \\
687     & \cellcolor[rgb]{0.5, 0.848888888888889, 1} & \cellcolor[rgb]{0.5, 0.973333333333333, 1} & \cellcolor[rgb]{0.5, 1, 0.793333333333333} & \cellcolor[rgb]{0.5, 1, 0.624444444444445} & & \cellcolor[rgb]{0.5, 0.599333333333333, 1} & \cellcolor[rgb]{0.5, 0.732666666666667, 1} & \cellcolor[rgb]{0.5, 0.942111111111111, 1} & \cellcolor[rgb]{0.5, 1, 0.695555555555556} \\
688     0.15 & \cellcolor[rgb]{0.5, 0.724444444444444, 1} 20.1 & \cellcolor[rgb]{0.5, 0.788888888888889, 1} 23.0 & \cellcolor[rgb]{0.5, 0.873333333333333, 1} 26.8 & \cellcolor[rgb]{0.5, 1, 0.984444444444444} 33.2 & & \cellcolor[rgb]{0.5, 0.5, 1} 8.29 & \cellcolor[rgb]{0.5, 0.518666666666667, 1} 10.84 & \cellcolor[rgb]{0.5, 0.588666666666667, 1} 13.99 & \cellcolor[rgb]{0.5, 0.715555555555556, 1} 19.7 \\
689     & \cellcolor[rgb]{0.5, 0.696111111111111, 1} & \cellcolor[rgb]{0.5, 0.736333333333333, 1} & \cellcolor[rgb]{0.5, 0.775222222222222, 1} & \cellcolor[rgb]{0.5, 0.860666666666667, 1} & & \cellcolor[rgb]{0.5, 0.5, 1} & \cellcolor[rgb]{0.5, 0.509333333333333, 1} & \cellcolor[rgb]{0.5, 0.544333333333333, 1} & \cellcolor[rgb]{0.5, 0.607777777777778, 1} \\
690     0.1 & \cellcolor[rgb]{0.5, 0.667777777777778, 1} 17.55 & \cellcolor[rgb]{0.5, 0.683777777777778, 1} 18.27 & \cellcolor[rgb]{0.5, 0.677111111111111, 1} 17.97 & \cellcolor[rgb]{0.5, 0.705777777777778, 1} 19.26 & & \cellcolor[rgb]{0.5, 0.5, 1} 4.96 & \cellcolor[rgb]{0.5, 0.5, 1} 5.46 & \cellcolor[rgb]{0.5, 0.5, 1} 6.04 & \cellcolor[rgb]{0.5,0.5, 1} 6.82 \\
691 chrisfen 3064 \bottomrule
692     \end{tabular}
693 gezelter 3066 \label{tab:DielectricMap}
694 chrisfen 3064 \end{table}
695 gezelter 3066
696 chrisfen 3064 The results of these calculations are displayed in table
697 gezelter 3066 \ref{tab:DielectricMap}. The dielectric constants for both models
698 chrisfen 3069 decrease with increasing cutoff radii ($R_\textrm{c}$) and increase
699     with increasing damping ($\alpha$). Another point to note is that
700     choosing $\alpha$ and $R_\textrm{c}$ identical to those used with the
701     Ewald summation results in the same calculated dielectric constant. As
702     an example, in the paper outlining the development of TIP5P-E, the
703     real-space cutoff and Ewald coefficient were tethered to the system
704     size, and for a 512 molecule system are approximately 12~\AA\ and
705     0.25~\AA$^{-1}$ respectively.\cite{Rick04} These parameters resulted
706     in a dielectric constant of 92$\pm$14, while with SF these parameters
707     give a dielectric constant of 90.8$\pm$0.9. Another example comes from
708     the TIP4P-Ew paper where $\alpha$ and $R_\textrm{c}$ were chosen to be
709     9.5~\AA\ and 0.35~\AA$^{-1}$, and these parameters resulted in a
710     dielectric constant equal to 63$\pm$1.\cite{Horn04} Calculations using
711     SF with these parameters and this water model give a dielectric
712     constant of 61$\pm$1. Since the dielectric constant is dependent on
713     $\alpha$ and $R_\textrm{c}$ with the SF technique, it might be
714     interesting to investigate the dependence of the static dielectric
715     constant on the choice of convergence parameters ($R_\textrm{c}$ and
716     $\kappa$) utilized in most implementations of the Ewald sum.
717 chrisfen 3064
718 gezelter 3068 It is also apparent from this table that electrostatic damping has a
719     more pronounced effect on the dipolar interactions of SSD/RF than the
720     monopolar interactions of TIP5P-E. The dielectric constant covers a
721     much wider range and has a steeper slope with increasing damping
722     parameter.
723 gezelter 3066
724     Although it is tempting to choose damping parameters equivalent to the
725 gezelter 3068 Ewald examples to obtain quantitative agreement, the results of our
726     previous work indicate that values this high are destructive to both
727     the energetics and dynamics.\cite{Fennell06} Ideally, $\alpha$ should
728     not exceed 0.3~\AA$^{-1}$ for any of the cutoff values in this
729     range. If the optimal damping parameter is chosen to be midway between
730     0.275 and 0.3~\AA$^{-1}$ (0.2875~\AA$^{-1}$) at the 9~\AA\ cutoff,
731     then the linear trend with $R_\textrm{c}$ will always keep $\alpha$
732     below 0.3~\AA$^{-1}$ for the studied cutoff radii. This linear
733     progression would give values of 0.2875, 0.2625, 0.2375, and
734     0.2125~\AA$^{-1}$ for cutoff radii of 9, 10, 11, and 12~\AA. Setting
735     this to be the default behavior for the damped SF technique will
736     result in consistent dielectric behavior for these and other condensed
737     molecular systems, regardless of the chosen cutoff radius. The static
738     dielectric constants for TIP5P-E simulations with 9 and 12\AA\
739     $R_\textrm{c}$ values using their respective damping parameters are
740     76$\pm$1 and 75$\pm$2. These values are lower than the values reported
741     for TIP5P-E with the Ewald sum; however, they are more in line with
742     the values reported by Mahoney {\it et al.} for TIP5P while using a
743     reaction field (RF) with an infinite RF dielectric constant
744     (81.5$\pm$1.6).\cite{Mahoney00}
745 gezelter 3066
746 gezelter 3068 Using the same linear relationship utilized with TIP5P-E above, the
747     static dielectric constants for SSD/RF with $R_\textrm{c}$ values of 9
748     and 12~\AA\ are 88$\pm$8 and 82.6$\pm$0.6. These values compare
749     favorably with the experimental value of 78.3.\cite{Malmberg56} These
750     results are also not surprising given that early studies of the SSD
751     model indicated a static dielectric constant around 81.\cite{Liu96}
752 gezelter 3066
753 gezelter 3068 As a final note on optimal damping parameters, aside from a slight
754 chrisfen 3064 lowering of $\Delta H_\textrm{vap}$, using these $\alpha$ values does
755 gezelter 3068 not alter any of the other thermodynamic properties.
756 chrisfen 3064
757 gezelter 3067 \subsection{Dynamic Properties of TIP5P-E}\label{sec:t5peDynamics}
758 chrisfen 3064
759 gezelter 3068 To look at the dynamic properties of TIP5P-E when using the SF method,
760     200~ps $NVE$ simulations were performed for each temperature at the
761     average density obtained from the $NPT$ simulations. $R_\textrm{c}$
762     values of 9 and 12~\AA\ and the ideal $\alpha$ values determined above
763     (0.2875 and 0.2125~\AA$^{-1}$) were used for the damped
764     electrostatics. The self-diffusion constants (D) were calculated from
765     linear fits to the long-time portion of the mean square displacement
766     ($\langle r^{2}(t) \rangle$).\cite{Allen87}
767 chrisfen 3064
768     In addition to translational diffusion, orientational relaxation times
769     were calculated for comparisons with the Ewald simulations and with
770     experiments. These values were determined from the same 200~ps $NVE$
771     trajectories used for translational diffusion by calculating the
772     orientational time correlation function,
773     \begin{equation}
774 chrisfen 3069 C_l^\alpha(t) = \left\langle P_l\left[\hat{\mathbf{u}}_i^\gamma(t)
775     \cdot\hat{\mathbf{u}}_i^\gamma(0)\right]\right\rangle,
776 chrisfen 3064 \label{eq:OrientCorr}
777     \end{equation}
778     where $P_l$ is the Legendre polynomial of order $l$ and
779     $\hat{\mathbf{u}}_i^\alpha$ is the unit vector of molecule $i$ along
780 chrisfen 3069 axis $\gamma$. The body-fixed reference frame used for our
781 gezelter 3067 orientational correlation functions has the $z$-axis running along the
782     HOH bisector, and the $y$-axis connecting the two hydrogen atoms.
783     $C_l^y$ is therefore calculated from the time evolution of a vector of
784     unit length pointing between the two hydrogen atoms.
785 chrisfen 3064
786     From the orientation autocorrelation functions, we can obtain time
787 gezelter 3067 constants for rotational relaxation. The relatively short time
788 chrisfen 3064 portions (between 1 and 3~ps for water) of these curves can be fit to
789     an exponential decay to obtain these constants, and they are directly
790     comparable to water orientational relaxation times from nuclear
791     magnetic resonance (NMR). The relaxation constant obtained from
792     $C_2^y(t)$ is of particular interest because it describes the
793     relaxation of the principle axis connecting the hydrogen atoms. Thus,
794     $C_2^y(t)$ can be compared to the intermolecular portion of the
795     dipole-dipole relaxation from a proton NMR signal and should provide
796     the best estimate of the NMR relaxation time constant.\cite{Impey82}
797    
798     \begin{figure}
799     \centering
800 gezelter 3067 \includegraphics[width=5.8in]{./figures/t5peDynamics.pdf}
801 chrisfen 3064 \caption{Diffusion constants ({\it upper}) and reorientational time
802 gezelter 3066 constants ({\it lower}) for TIP5P-E using the Ewald sum and SF
803 chrisfen 3064 technique compared with experiment. Data at temperatures less than
804     0$^\circ$C were not included in the $\tau_2^y$ plot to allow for
805     easier comparisons in the more relevant temperature regime.}
806     \label{fig:t5peDynamics}
807     \end{figure}
808     Results for the diffusion constants and orientational relaxation times
809     are shown in figure \ref{fig:t5peDynamics}. From this figure, it is
810     apparent that the trends for both $D$ and $\tau_2^y$ of TIP5P-E using
811 gezelter 3066 the Ewald sum are reproduced with the SF technique. The enhanced
812 gezelter 3067 diffusion (relative to experiment) at high temperatures are again the
813     product of the lower simulated densities and do not provide any
814     special insight into differences between the electrostatic summation
815 gezelter 3068 techniques. Though not apparent in this figure, SF values at the
816     lowest temperature are approximately twice as slow as $D$ values
817     obtained using the Ewald sum. These values support the observation
818     from section \ref{sec:t5peThermo} that the SF simulations result in a
819     slightly more viscous supercooled region than is obtained using the
820     Ewald sum.
821 chrisfen 3064
822     The $\tau_2^y$ results in the lower frame of figure
823 gezelter 3067 \ref{fig:t5peDynamics} show a much greater difference between the SF
824     results and the Ewald results. At all temperatures shown, TIP5P-E
825 chrisfen 3064 relaxes faster than experiment with the Ewald sum while tracking
826 chrisfen 3069 experiment fairly well when using the SF technique (independent of the
827     choice of damping constant). There are several possible reasons for
828 gezelter 3067 this deviation between techniques. The Ewald results were calculated
829 chrisfen 3069 using shorter trajectories (10~ps) than the SF results (200~ps).
830     Calculation of these SF values from 10~ps trajectories (with
831 gezelter 3068 subsequently lower accuracy) showed a 0.4~ps drop in $\tau_2^y$,
832 gezelter 3067 placing the result more in line with that obtained using the Ewald
833 gezelter 3068 sum. Recomputing correlation times to meet a lower statistical
834     standard is counter-productive, however. Assuming the Ewald results
835     are not entirely the product of poor statistics, differences in
836     techniques to integrate the orientational motion could also play a
837     role. {\sc shake} is the most commonly used technique for
838     approximating rigid-body orientational motion,\cite{Ryckaert77}
839     whereas in {\sc oopse}, we maintain and integrate the entire rotation
840     matrix using the {\sc dlm} method.\cite{Meineke05} Since {\sc shake}
841     is an iterative constraint technique, if the convergence tolerances
842     are raised for increased performance, error will accumulate in the
843     orientational motion. Finally, the Ewald results were calculated using
844     the $NVT$ ensemble, while the $NVE$ ensemble was used for SF
845     calculations. The motion due to the extended variable (the thermostat)
846     will always alter the dynamics, resulting in differences between $NVT$
847     and $NVE$ results. These differences are increasingly noticeable as
848     the time constant for the thermostat decreases.
849 chrisfen 3064
850 gezelter 3067 \subsection{Comparison of Reaction Field and Damped Electrostatics for
851     SSD/RF}
852 chrisfen 3064
853 gezelter 3068 SSD/RF was parametrized for use with a reaction field, which is a
854     common and relatively inexpensive way of handling long-range
855     electrostatic corrections in dipolar systems.\cite{Onsager36}
856     Although there is no reason to expect that damped electrostatics will
857     behave in a similar fashion to the reaction field, it is well known
858     that model that are parametrized for use with Ewald do better than
859     unoptimized models under the influence of a reaction
860     field.\cite{Rick04} We compared a number of properties of SSD/RF that
861     had previously been computed using a reaction field with those same
862     values under damped electrostatics.
863 chrisfen 3064
864 chrisfen 3069 The properties shown in table \ref{tab:dampedSSDRF} show that using
865     damped electrostatics can result in even better agreement with
866     experiment than is obtained via reaction field. The average density
867     shows a modest increase when using damped electrostatics in place of
868     the reaction field. This comes about because we neglect the pressure
869     effect due to the surroundings outside of the cutoff, instead relying
870     on screening effects to neutralize electrostatic interactions at long
871 gezelter 3068 distances. The $C_p$ also shows a slight increase, indicating greater
872     fluctuation in the enthalpy at constant pressure. The only other
873     differences between the damped electrostatics and the reaction field
874     results are the dipole reorientational time constants, $\tau_1$ and
875     $\tau_2$. When using damped electrostatics, the water molecules relax
876     more quickly and exhibit behavior closer to the experimental
877     values. These results indicate that since there is no need to specify
878     an external dielectric constant with the damped electrostatics, it is
879     almost certainly a better choice for dipolar simulations than the
880 chrisfen 3069 reaction field method. Additionally, by using damped electrostatics
881     instead of reaction field, SSD/RF can be used effectively with mixed
882     charge / dipolar systems, such as dissolved ions, dissolved organic
883     molecules, or even proteins.
884 chrisfen 3064
885     \begin{table}
886 gezelter 3068 \caption{Properties of SSD/RF when using reaction field or damped
887     electrostatics. Simulations were carried out at 298~K, 1~atm, and
888     with 512 molecules.}
889 chrisfen 3064 \footnotesize
890     \centering
891     \begin{tabular}{ llccc }
892     \toprule
893     \toprule
894 gezelter 3068 & & Reaction Field (Ref. \citen{Fennell04}) & Damped Electrostatics &
895     Experiment [Ref.] \\
896 chrisfen 3064 & & $\epsilon = 80$ & $R_\textrm{c} = 12$\AA ; $\alpha = 0.2125$~\AA$^{-1}$ & \\
897     \midrule
898     $\rho$ & (g cm$^{-3}$) & 0.997(1) & 1.004(4) & 0.997 [\citen{CRC80}]\\
899     $C_p$ & (cal mol$^{-1}$ K$^{-1}$) & 23.8(2) & 27(1) & 18.005 [\citen{Wagner02}] \\
900     $D$ & ($10^{-5}$ cm$^2$ s$^{-1}$) & 2.32(6) & 2.33(2) & 2.299 [\citen{Mills73}]\\
901     $n_C$ & & 4.4 & 4.2 & 4.7 [\citen{Hura00}]\\
902     $n_H$ & & 3.7 & 3.7 & 3.5 [\citen{Soper86}]\\
903     $\tau_1$ & (ps) & 7.2(4) & 5.86(8) & 5.7 [\citen{Eisenberg69}]\\
904     $\tau_2$ & (ps) & 3.2(2) & 2.45(7) & 2.3 [\citen{Krynicki66}]\\
905     \bottomrule
906     \end{tabular}
907     \label{tab:dampedSSDRF}
908     \end{table}
909    
910 gezelter 3067 \subsection{Predictions of Ice Polymorph Stability}
911 chrisfen 3064
912 gezelter 3068 In an earlier paper, we performed a series of free energy calculations
913 chrisfen 3064 on several ice polymorphs which are stable or metastable at low
914     pressures, one of which (Ice-$i$) we observed in spontaneous
915 gezelter 3068 crystallizations of an early version of the SSD/RF water
916     model.\cite{Fennell05} In this study, a distinct dependence of the
917     computed free energies on the cutoff radius and electrostatic
918     summation method was observed. Since the SF technique can be used as
919     a simple and efficient replacement for the Ewald summation, our final
920     test of this method is to see if it is capable of addressing the
921     spurious stability of the Ice-$i$ phases with the various common water
922     models. To this end, we have performed thermodynamic integrations of
923     all of the previously discussed ice polymorphs using the SF technique
924     with a cutoff radius of 12~\AA\ and an $\alpha$ of 0.2125~\AA . These
925     calculations were performed on TIP5P-E and TIP4P-Ew (variants of the
926     TIP5P and TIP4P models optimized for the Ewald summation) as well as
927     SPC/E and SSD/RF.
928 chrisfen 3064
929     \begin{table}
930     \centering
931     \caption{Helmholtz free energies of ice polymorphs at 1~atm and 200~K
932 gezelter 3066 using the damped SF electrostatic correction method with a
933 chrisfen 3064 variety of water models.}
934     \begin{tabular}{ lccccc }
935     \toprule
936     \toprule
937     Model & I$_\textrm{h}$ & I$_\textrm{c}$ & B & Ice-$i$ & Ice-$i^\prime$ \\
938     \cmidrule(lr){2-6}
939     & \multicolumn{5}{c}{(kcal mol$^{-1}$)} \\
940     \midrule
941     TIP5P-E & -11.98(4) & -11.96(4) & -11.87(3) & - & -11.95(3) \\
942     TIP4P-Ew & -13.11(3) & -13.09(3) & -12.97(3) & - & -12.98(3) \\
943     SPC/E & -12.99(3) & -13.00(3) & -13.03(3) & - & -12.99(3) \\
944     SSD/RF & -11.83(3) & -11.66(4) & -12.32(3) & -12.39(3) & - \\
945     \bottomrule
946     \end{tabular}
947     \label{tab:dampedFreeEnergy}
948     \end{table}
949     The results of these calculations in table \ref{tab:dampedFreeEnergy}
950 gezelter 3067 show similar behavior to the Ewald results in the previous
951     study.\cite{Fennell05} The Helmholtz free energies of the ice
952     polymorphs with SSD/RF order in the same fashion, with Ice-$i$ having
953     the lowest free energy; however, the Ice-$i$ and ice B free energies
954     are quite a bit closer (nearly isoenergetic). The SPC/E results show
955 gezelter 3068 the different polymorphs to be nearly isoenergetic. This is the same
956     behavior observed using an Ewald correction.\cite{Fennell05} Ice B has
957     the lowest Helmholtz free energy for SPC/E; however, all the polymorph
958     results overlap within the error estimates.
959 chrisfen 3064
960     The most interesting results from these calculations come from the
961     more expensive TIP4P-Ew and TIP5P-E results. Both of these models were
962     optimized for use with an electrostatic correction and are
963 gezelter 3067 geometrically arranged to mimic water using drastically different
964 gezelter 3068 charge distributions. In TIP5P-E, the primary location for the
965 gezelter 3067 negative charge in the molecule is assigned to the lone-pairs of the
966     oxygen, while TIP4P-Ew places the negative charge near the
967     center-of-mass along the H-O-H bisector. There is some debate as to
968     which is the proper choice for the negative charge location, and this
969     has in part led to a six-site water model that balances both of these
970     options.\cite{Vega05,Nada03} The limited results in table
971     \ref{tab:dampedFreeEnergy} support the results of Vega {\it et al.},
972 gezelter 3068 which indicate the TIP4P charge location geometry performs better
973     under some circumstances.\cite{Vega05} With the TIP4P-Ew water model,
974     the experimentally observed polymorph (ice I$_\textrm{h}$) is the
975     preferred form with ice I$_\textrm{c}$ slightly higher in energy,
976     though overlapping within error. Additionally, the spurious ice B and
977     Ice-$i^\prime$ structures are destabilized relative to these
978     polymorphs. TIP5P-E shows similar behavior to SPC/E, where there is no
979     real free energy distinction between the various polymorphs. While ice
980     B is close in free energy to the other polymorphs, these results fail
981     to support the findings of other researchers indicating the preferred
982     form of TIP5P at 1~atm is a structure similar to ice
983     B.\cite{Yamada02,Vega05,Abascal05} It should be noted that we were
984     looking at TIP5P-E rather than TIP5P, and the differences in the
985     Lennard-Jones parameters could cause this discrepancy. Overall, these
986     results indicate that TIP4P-Ew is a better mimic of the solid forms of
987     water than some of the other models.
988 chrisfen 3064
989     \section{Conclusions}
990    
991 gezelter 3067 This investigation of pairwise electrostatic summation techniques
992     shows that there is a viable and computationally efficient alternative
993 chrisfen 3069 to the Ewald summation. The SF method (equation (\ref{eq:DSFPot}))
994     has proven itself capable of reproducing structural, thermodynamic,
995     and dynamic quantities that are nearly quantitative matches to results
996 gezelter 3067 from far more expensive methods. Additionally, we have now extended
997     the damping formalism to electrostatic multipoles, so the damped SF
998     potential can be used in systems that contain mixtures of charges and
999     point multipoles.
1000    
1001     We have also provided a simple linear prescription for choosing
1002     optimal damping parameters given a choice of cutoff radius. The
1003     damping parameters were chosen to obtain a static dielectric constant
1004     as close as possible to the experimental value, which should be useful
1005     for simulating the electrostatic screening properties of liquid water
1006     accurately. The linear formula for optimal damping was the same for
1007     a complicated multipoint model as it was for a simple point-dipolar
1008     model.
1009    
1010     As in all purely pairwise cutoff methods, the damped SF method is
1011     expected to scale approximately {\it linearly} with system size, and
1012     is easily parallelizable. This should result in substantial
1013     reductions in the computational cost of performing large simulations.
1014     With the proper use of pre-computation and spline interpolation, the
1015 gezelter 3068 damped SF method is essentially the same cost as a simple real-space
1016 gezelter 3067 cutoff.
1017    
1018     We are not suggesting that there is any flaw with the Ewald sum; in
1019     fact, it is the standard by which the damped SF method has been
1020     judged. However, these results provide further evidence that in the
1021     typical simulations performed today, the Ewald summation may no longer
1022     be required to obtain the level of accuracy most researchers have come
1023     to expect.
1024    
1025 chrisfen 3064 \section{Acknowledgments}
1026     Support for this project was provided by the National Science
1027     Foundation under grant CHE-0134881. Computation time was provided by
1028 gezelter 3067 the Notre Dame Center for Research Computing. The authors would like
1029     to thank Steve Corcelli and Ed Maginn for helpful discussions and
1030     comments.
1031 chrisfen 3064
1032     \newpage
1033    
1034     \bibliographystyle{achemso}
1035     \bibliography{multipoleSFPaper}
1036    
1037    
1038     \end{document}