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30 chrisfen 3064
31     \begin{document}
32    
33 gezelter 3066 \title{Pairwise Alternatives to the Ewald Sum: Applications
34     and Extension to Point Multipoles}
35 chrisfen 3064
36 gezelter 3068 \author{Christopher J. Fennell and J. Daniel Gezelter\footnote{Corresponding author. \ Electronic mail: gezelter@nd.edu} \\
37     Department of Chemistry and Biochemistry\\
38     University of Notre Dame\\
39 chrisfen 3064 Notre Dame, Indiana 46556}
40    
41     \date{\today}
42    
43     \maketitle
44     %\doublespacing
45    
46     \begin{abstract}
47 gezelter 3066 The damped, shifted-force electrostatic potential has been shown to
48     give nearly quantitative agreement with smooth particle mesh Ewald for
49     energy differences between configurations as well as for atomic force
50     and molecular torque vectors. In this paper, we extend this technique
51     to handle interactions between electrostatic multipoles. We also
52     investigate the effects of damped and shifted electrostatics on the
53     static, thermodynamic, and dynamic properties of liquid water and
54 chrisfen 3069 various polymorphs of ice. Additionally, we provide a way of choosing
55     the optimal damping strength for a given cutoff radius that reproduces
56     the static dielectric constant in a variety of water models.
57 chrisfen 3064 \end{abstract}
58    
59 gezelter 3068 \newpage
60    
61 chrisfen 3064 %\narrowtext
62    
63     %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
64     % BODY OF TEXT
65     %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
66    
67     \section{Introduction}
68    
69 gezelter 3066 Over the past several years, there has been increasing interest in
70     pairwise methods for correcting electrostatic interactions in computer
71 chrisfen 3064 simulations of condensed molecular
72 gezelter 3066 systems.\cite{Wolf99,Zahn02,Kast03,Beck05,Ma05,Fennell06} These
73     techniques were developed from the observations and efforts of Wolf
74     {\it et al.} and their work towards an $\mathcal{O}(N)$ Coulombic
75     sum.\cite{Wolf99} Wolf's method of cutoff neutralization is able to
76     obtain excellent agreement with Madelung energies in ionic
77     crystals.\cite{Wolf99}
78 chrisfen 3064
79 gezelter 3066 In a recent paper, we showed that simple modifications to Wolf's
80     method could give nearly quantitative agreement with smooth particle
81     mesh Ewald (SPME) for quantities of interest in Monte Carlo
82     (i.e. configurational energy differences) and Molecular Dynamics
83     (i.e. atomic force and molecular torque vectors).\cite{Fennell06} We
84     described the undamped and damped shifted potential (SP) and shifted
85 gezelter 3067 force (SF) techniques. The potential for the damped form of the SP
86 chrisfen 3069 method, where $\alpha$ is the adjustable damping parameter, is given
87     by
88 chrisfen 3064 \begin{equation}
89 chrisfen 3069 V_{\textrm{DSP}}(r) = q_iq_j\left(\frac{\textrm{erfc}\left(\alpha r_{ij}\right)}{r_{ij}}
90 gezelter 3067 - \frac{\textrm{erfc}\left(\alpha R_\textrm{c}\right)}{R_\textrm{c}}\right)
91 chrisfen 3069 \quad r_{ij}\leqslant R_\textrm{c},
92 gezelter 3067 \label{eq:DSPPot}
93     \end{equation}
94     while the damped form of the SF method is given by
95     \begin{equation}
96 chrisfen 3064 \begin{split}
97     V_\mathrm{DSF}(r) = q_iq_j\Biggr{[}&
98 chrisfen 3069 \frac{\mathrm{erfc}\left(\alpha r_{ij}\right)}{r_{ij}}
99 chrisfen 3064 - \frac{\mathrm{erfc}\left(\alpha R_\mathrm{c}\right)}{R_\mathrm{c}} \\
100     &+ \left(\frac{\mathrm{erfc}\left(\alpha R_\mathrm{c}\right)}{R_\mathrm{c}^2}
101     + \frac{2\alpha}{\pi^{1/2}}
102     \frac{\exp\left(-\alpha^2R_\mathrm{c}^2\right)}{R_\mathrm{c}}
103 chrisfen 3069 \right)\left(r_{ij}-R_\mathrm{c}\right)\ \Biggr{]}
104     \quad r_{ij}\leqslant R_\textrm{c}.
105 chrisfen 3064 \label{eq:DSFPot}
106     \end{split}
107     \end{equation}
108 gezelter 3073 In these potentials and in all electrostatic quantities that follow,
109     the standard $4 \pi \epsilon_{0}$ has been omitted for clarity.
110 chrisfen 3064
111 gezelter 3066 The damped SF method is an improvement over the SP method because
112     there is no discontinuity in the forces as particles move out of the
113     cutoff radius ($R_\textrm{c}$). This is accomplished by shifting the
114     forces (and potential) to zero at $R_\textrm{c}$. This is analogous to
115     neutralizing the charge as well as the force effect of the charges
116     within $R_\textrm{c}$.
117    
118     To complete the charge neutralization procedure, a self-neutralization
119 gezelter 3071 term is added to the potential. This term is constant (as long as the
120     charges and cutoff radius do not change), and exists outside the
121 gezelter 3067 normal pair-loop. It can be thought of as a contribution from a
122     charge opposite in sign, but equal in magnitude, to the central
123 chrisfen 3069 charge, which has been spread out over the surface of the cutoff
124 gezelter 3066 sphere. This term is calculated via a single loop over all charges in
125     the system. For the undamped case, the self term can be written as
126 chrisfen 3064 \begin{equation}
127 gezelter 3071 V_\textrm{self} = - \frac{1}{2 R_\textrm{c}} \sum_{i=1}^N q_i^{2},
128 chrisfen 3064 \label{eq:selfTerm}
129     \end{equation}
130     while for the damped case it can be written as
131     \begin{equation}
132 gezelter 3071 V_\textrm{self} = - \left(\frac{\alpha}{\sqrt{\pi}}
133 gezelter 3066 + \frac{\textrm{erfc}(\alpha
134     R_\textrm{c})}{2R_\textrm{c}}\right) \sum_{i=1}^N q_i^{2}.
135 chrisfen 3064 \label{eq:dampSelfTerm}
136     \end{equation}
137     The first term within the parentheses of equation
138 gezelter 3066 (\ref{eq:dampSelfTerm}) is identical to the self term in the Ewald
139 chrisfen 3064 summation, and comes from the utilization of the complimentary error
140     function for electrostatic damping.\cite{deLeeuw80,Wolf99}
141    
142 gezelter 3066 The SF, SP, and Wolf methods operate by neutralizing the total charge
143     contained within the cutoff sphere surrounding each particle. This is
144 gezelter 3071 accomplished by shifting the potential functions to generate image
145     charges on the surface of the cutoff sphere for each pair interaction
146     computed within $R_\textrm{c}$. The damping function applied to the
147     potential is also an important method for accelerating convergence.
148     In the case of systems involving electrostatic distributions of higher
149     order than point charges, the question remains: How will the shifting
150     and damping need to be modified in order to accommodate point
151     multipoles?
152 chrisfen 3064
153 gezelter 3066 \section{Electrostatic Damping for Point
154     Multipoles}\label{sec:dampingMultipoles}
155 chrisfen 3064
156 gezelter 3066 To apply the SF method for systems involving point multipoles, we
157     consider separately the two techniques (shifting and damping) which
158     contribute to the effectiveness of the DSF potential.
159 chrisfen 3064
160 gezelter 3066 As noted above, shifting the potential and forces is employed to
161     neutralize the total charge contained within each cutoff sphere;
162     however, in a system composed purely of point multipoles, each cutoff
163 gezelter 3085 sphere is already neutral, so shifting becomes unnecessary. It would
164     still be possible, however, to subtract out the effects of image
165     multipoles. This is essentially what is done for dipoles in the
166     reaction field methods, and the technique could be extended to higher
167     order multipoles.
168 gezelter 3066
169     In a mixed system of charges and multipoles, the undamped SF potential
170     needs only to shift the force terms between charges and smoothly
171     truncate the multipolar interactions with a switching function. The
172     switching function is required for energy conservation, because a
173     discontinuity will exist in both the potential and forces at
174     $R_\textrm{c}$ in the absence of shifting terms.
175    
176 chrisfen 3069 To dampen the SF potential for point multipoles, we need to incorporate
177 gezelter 3066 the complimentary error function term into the standard forms of the
178     multipolar potentials. We can determine the necessary damping
179 chrisfen 3069 functions by replacing $1/r_{ij}$ with $\mathrm{erfc}(\alpha r_{ij})/r_{ij}$ in the
180 gezelter 3066 multipole expansion. This procedure quickly becomes quite complex
181     with ``two-center'' systems, like the dipole-dipole potential, and is
182     typically approached using spherical harmonics.\cite{Hirschfelder67} A
183     simpler method for determining damped multipolar interaction
184     potentials arises when we adopt the tensor formalism described by
185     Stone.\cite{Stone02}
186    
187     The tensor formalism for electrostatic interactions involves obtaining
188     the multipole interactions from successive gradients of the monopole
189     potential. Thus, tensors of rank zero through two are
190 chrisfen 3064 \begin{equation}
191 gezelter 3066 T = \frac{1}{r_{ij}},
192     \label{eq:tensorRank1}
193 chrisfen 3064 \end{equation}
194     \begin{equation}
195 gezelter 3066 T_\alpha = \nabla_\alpha \frac{1}{r_{ij}},
196     \label{eq:tensorRank2}
197 chrisfen 3064 \end{equation}
198 gezelter 3066 \begin{equation}
199     T_{\alpha\beta} = \nabla_\alpha\nabla_\beta \frac{1}{r_{ij}},
200     \label{eq:tensorRank3}
201     \end{equation}
202     where the form of the first tensor is the charge-charge potential, the
203     second gives the charge-dipole potential, and the third gives the
204     charge-quadrupole and dipole-dipole potentials.\cite{Stone02} Since
205     the force is $-\nabla V$, the forces for each potential come from the
206     next higher tensor.
207 chrisfen 3064
208 chrisfen 3069 As one would do with the multipolar expansion, we can replace $r_{ij}^{-1}$
209     with $\mathrm{erfc}(\alpha r_{ij})/r_{ij}$ to obtain damped forms of the
210 gezelter 3066 electrostatic potentials. Equation \ref{eq:tensorRank2} generates a
211     damped charge-dipole potential,
212 chrisfen 3064 \begin{equation}
213 gezelter 3068 V_\textrm{Dcd} = -q_i\frac{\mathbf{r}_{ij}\cdot\boldsymbol{\mu}_j}{r^3_{ij}}
214     c_1(r_{ij}),
215 chrisfen 3064 \label{eq:dChargeDipole}
216     \end{equation}
217     where $c_1(r_{ij})$ is
218     \begin{equation}
219     c_1(r_{ij}) = \frac{2\alpha r_{ij}e^{-\alpha^2r^2_{ij}}}{\sqrt{\pi}}
220     + \textrm{erfc}(\alpha r_{ij}).
221     \label{eq:c1Func}
222     \end{equation}
223 gezelter 3066 Equation \ref{eq:tensorRank3} generates a damped dipole-dipole potential,
224 chrisfen 3064 \begin{equation}
225 gezelter 3066 V_\textrm{Ddd} = 3\frac{(\boldsymbol{\mu}_i\cdot\mathbf{r}_{ij})
226     (\boldsymbol{\mu}_j\cdot\mathbf{r}_{ij})}{r^5_{ij}}
227     c_2(r_{ij}) -
228     \frac{\boldsymbol{\mu}_i\cdot\boldsymbol{\mu}_j}{r^3_{ij}}
229     c_1(r_{ij}),
230     \label{eq:dampDipoleDipole}
231 chrisfen 3064 \end{equation}
232 gezelter 3066 where
233 chrisfen 3064 \begin{equation}
234     c_2(r_{ij}) = \frac{4\alpha^3r^3_{ij}e^{-\alpha^2r^2_{ij}}}{3\sqrt{\pi}}
235     + \frac{2\alpha r_{ij}e^{-\alpha^2r^2_{ij}}}{\sqrt{\pi}}
236     + \textrm{erfc}(\alpha r_{ij}).
237     \end{equation}
238     Note that $c_2(r_{ij})$ is equal to $c_1(r_{ij})$ plus an additional
239     term. Continuing with higher rank tensors, we can obtain the damping
240     functions for higher multipole potentials and forces. Each subsequent
241     damping function includes one additional term, and we can simplify the
242     procedure for obtaining these terms by writing out the following
243 gezelter 3073 recurrence relation,
244 chrisfen 3064 \begin{equation}
245     c_n(r_{ij}) = \frac{2^n(\alpha r_{ij})^{2n-1}e^{-\alpha^2r^2_{ij}}}
246     {(2n-1)!!\sqrt{\pi}} + c_{n-1}(r_{ij}),
247     \label{eq:dampingGeneratingFunc}
248     \end{equation}
249     where,
250     \begin{equation}
251     m!! \equiv \left\{ \begin{array}{l@{\quad\quad}l}
252     m\cdot(m-2)\ldots 5\cdot3\cdot1 & m > 0\textrm{ odd} \\
253     m\cdot(m-2)\ldots 6\cdot4\cdot2 & m > 0\textrm{ even} \\
254     1 & m = -1\textrm{ or }0,
255     \end{array}\right.
256     \label{eq:doubleFactorial}
257     \end{equation}
258     and $c_0(r_{ij})$ is erfc$(\alpha r_{ij})$. This generating function
259 gezelter 3085 is similar in form to those obtained by Smith,\cite{Smith82,Smith98}
260     Toukmaji {\it et al.}\cite{Toukmaji00}, Aguado and
261     Madden,\cite{Aguado03}, and Sagui {\it et al.}\cite{Sagui04} for the
262     application of the Ewald sum to multipoles.
263 chrisfen 3064
264     Returning to the dipole-dipole example, the potential consists of a
265 chrisfen 3069 portion dependent upon $r_{ij}^{-5}$ and another dependent upon
266     $r_{ij}^{-3}$. $c_2(r_{ij})$ and $c_1(r_{ij})$ dampen these two parts
267 gezelter 3066 respectively. The forces for the damped dipole-dipole interaction, are
268     obtained from the next higher tensor, $T_{\alpha \beta \gamma}$,
269 chrisfen 3064 \begin{equation}
270     \begin{split}
271     F_\textrm{Ddd} = &15\frac{(\boldsymbol{\mu}_i\cdot\mathbf{r}_{ij})
272     (\boldsymbol{\mu}_j\cdot\mathbf{r}_{ij})\mathbf{r}_{ij}}{r^7_{ij}}
273     c_3(r_{ij})\\ &-
274 chrisfen 3069 3\frac{(\boldsymbol{\mu}_i\cdot\mathbf{r}_{ij})\cdot\boldsymbol{\mu}_j +
275     (\boldsymbol{\mu}_j\cdot\mathbf{r}_{ij})\cdot\boldsymbol{\mu}_i +
276 chrisfen 3064 \boldsymbol{\mu}_i\cdot\boldsymbol{\mu}_j\cdot\mathbf{r}_{ij}}
277     {r^5_{ij}} c_2(r_{ij}),
278     \end{split}
279     \label{eq:dampDipoleDipoleForces}
280     \end{equation}
281 gezelter 3066 Using the tensor formalism, we can dampen higher order multipolar
282     interactions using the same effective damping function that we use for
283 gezelter 3068 charge-charge interactions. This allows us to include multipoles in
284     simulations involving damped electrostatic interactions. In general,
285     if the multipolar potentials are left in $\mathbf{r}_{ij}/r_{ij}$
286     form, instead of reducing them to the more common angular forms which
287 chrisfen 3069 use $\hat{\mathbf{r}}_{ij}$ (or the resultant angles), one may simply replace
288 gezelter 3068 any $1/r_{ij}^{2n+1}$ dependence with $c_n(r_{ij}) / r_{ij}^{2n+1}$ to
289     obtain the damped version of that multipolar potential.
290 chrisfen 3064
291 gezelter 3068 As a practical consideration, we note that the evaluation of the
292     complementary error function inside a pair loop can become quite
293     costly. In practice, we pre-compute the $c_n(r)$ functions over a
294     grid of $r$ values and use cubic spline interpolation to obtain
295     estimates of these functions when necessary. Using this procedure,
296     the computational cost of damped electrostatics is only marginally
297     more costly than the undamped case.
298 chrisfen 3064
299 gezelter 3068 \section{Applications of Damped Shifted-Force Electrostatics}
300 gezelter 3067
301 gezelter 3066 Our earlier work on the SF method showed that it can give nearly
302     quantitive agreement with SPME-derived configurational energy
303     differences. The force and torque vectors in identical configurations
304     are also nearly equivalent under the damped SF potential and
305     SPME.\cite{Fennell06} Although these measures bode well for the
306     performance of the SF method in both Monte Carlo and Molecular
307     Dynamics simulations, it would be helpful to have direct comparisons
308     of structural, thermodynamic, and dynamic quantities. To address
309     this, we performed a detailed analysis of a group of simulations
310     involving water models (both point charge and multipolar) under a
311     number of different simulation conditions.
312 chrisfen 3064
313 gezelter 3066 To provide the most difficult test for the damped SF method, we have
314     chosen a model that has been optimized for use with Ewald sum, and
315     have compared the simulated properties to those computed via Ewald.
316     It is well known that water models parametrized for use with the Ewald
317     sum give calculated properties that are in better agreement with
318     experiment.\cite{vanderSpoel98,Horn04,Rick04} For these reasons, we
319     chose the TIP5P-E water model for our comparisons involving point
320     charges.\cite{Rick04}
321 chrisfen 3064
322     The TIP5P-E water model is a variant of Mahoney and Jorgensen's
323     five-point transferable intermolecular potential (TIP5P) model for
324     water.\cite{Mahoney00} TIP5P was developed to reproduce the density
325 gezelter 3066 maximum in liquid water near 4$^\circ$C. As with many previous point
326     charge water models (such as ST2, TIP3P, TIP4P, SPC, and SPC/E), TIP5P
327     was parametrized using a simple cutoff with no long-range
328     electrostatic
329 chrisfen 3064 correction.\cite{Stillinger74,Jorgensen83,Berendsen81,Berendsen87}
330     Without this correction, the pressure term on the central particle
331     from the surroundings is missing. When this correction is included,
332 gezelter 3073 the system expands to compensate for this added pressure and therefore
333     under-predicts the density of water under standard conditions. In
334     developing TIP5P-E, Rick preserved the geometry and point charge
335     magnitudes in TIP5P and focused on altering the Lennard-Jones
336     parameters to correct the density at 298~K. With the density
337     corrected, he compared common water properties for TIP5P-E using the
338     Ewald sum with TIP5P using a 9~\AA\ cutoff.
339 chrisfen 3064
340 gezelter 3066 In the following sections, we compare these same properties calculated
341     from TIP5P-E using the Ewald sum with TIP5P-E using the damped SF
342     technique. Our comparisons include the SF technique with a 12~\AA\
343     cutoff and an $\alpha$ = 0.0, 0.1, and 0.2~\AA$^{-1}$, as well as a
344     9~\AA\ cutoff with an $\alpha$ = 0.2~\AA$^{-1}$.
345 chrisfen 3064
346 chrisfen 3069 Moving beyond point-charge electrostatics, the soft sticky dipole
347     (SSD) family of water models is the perfect test case for the
348     point-multipolar extension of damped electrostatics. SSD water models
349     are single point molecules that consist of a ``soft'' Lennard-Jones
350     sphere, a point-dipole, and a tetrahedral function for capturing the
351     hydrogen bonding nature of water - a spherical harmonic term for
352     water-water tetrahedral interactions and a point-quadrupole for
353     interactions with surrounding charges. Detailed descriptions of these
354     models can be found in other
355     studies.\cite{Liu96b,Chandra99,Tan03,Fennell04}
356    
357     In deciding which version of the SSD model to use, we need only
358     consider that the SF technique was presented as a pairwise replacement
359     for the Ewald summation. It has been suggested that models
360     parametrized for the Ewald summation (like TIP5P-E) would be
361     appropriate for use with a reaction field and vice versa.\cite{Rick04}
362     Therefore, we decided to test the SSD/RF water model, which was
363     parametrized for use with a reaction field, with the damped
364     electrostatic technique to see how the calculated properties change.
365    
366 gezelter 3066 \subsection{The Density Maximum of TIP5P-E}\label{sec:t5peDensity}
367 chrisfen 3064
368     To compare densities, $NPT$ simulations were performed with the same
369     temperatures as those selected by Rick in his Ewald summation
370     simulations.\cite{Rick04} In order to improve statistics around the
371     density maximum, 3~ns trajectories were accumulated at 0, 12.5, and
372     25$^\circ$C, while 2~ns trajectories were obtained at all other
373 gezelter 3073 temperatures. The average densities were calculated from the latter
374 chrisfen 3064 three-fourths of each trajectory. Similar to Mahoney and Jorgensen's
375     method for accumulating statistics, these sequences were spliced into
376     200 segments, each providing an average density. These 200 density
377     values were used to calculate the average and standard deviation of
378     the density at each temperature.\cite{Mahoney00}
379    
380     \begin{figure}
381     \includegraphics[width=\linewidth]{./figures/tip5peDensities.pdf}
382     \caption{Density versus temperature for the TIP5P-E water model when
383 gezelter 3066 using the Ewald summation (Ref. \citen{Rick04}) and the SF method with
384     varying cutoff radii and damping coefficients. The pressure term from
385     the image-charge shell is larger than that provided by the
386     reciprocal-space portion of the Ewald summation, leading to slightly
387     lower densities. This effect is more visible with the 9~\AA\ cutoff,
388     where the image charges exert a greater force on the central
389 gezelter 3073 particle. The representative error bar for the SF methods shows the
390     average one-sigma uncertainty of the density measurement, and this
391     uncertainty is the same for all the SF curves.}
392 chrisfen 3064 \label{fig:t5peDensities}
393     \end{figure}
394     Figure \ref{fig:t5peDensities} shows the densities calculated for
395 gezelter 3066 TIP5P-E using differing electrostatic corrections overlaid with the
396     experimental values.\cite{CRC80} The densities when using the SF
397     technique are close to, but typically lower than, those calculated
398 chrisfen 3064 using the Ewald summation. These slightly reduced densities indicate
399     that the pressure component from the image charges at R$_\textrm{c}$
400     is larger than that exerted by the reciprocal-space portion of the
401 gezelter 3066 Ewald summation. Bringing the image charges closer to the central
402 chrisfen 3064 particle by choosing a 9~\AA\ R$_\textrm{c}$ (rather than the
403     preferred 12~\AA\ R$_\textrm{c}$) increases the strength of the image
404     charge interactions on the central particle and results in a further
405     reduction of the densities.
406    
407     Because the strength of the image charge interactions has a noticeable
408     effect on the density, we would expect the use of electrostatic
409     damping to also play a role in these calculations. Larger values of
410     $\alpha$ weaken the pair-interactions; and since electrostatic damping
411     is distance-dependent, force components from the image charges will be
412     reduced more than those from particles close the the central
413     charge. This effect is visible in figure \ref{fig:t5peDensities} with
414 chrisfen 3069 the damped SF sums showing slightly higher densities than the undamped
415     case; however, it is clear that the choice of cutoff radius plays a
416     much more important role in the resulting densities.
417 chrisfen 3064
418 gezelter 3066 All of the above density calculations were performed with systems of
419     512 water molecules. Rick observed a system size dependence of the
420     computed densities when using the Ewald summation, most likely due to
421     his tying of the convergence parameter to the box
422 chrisfen 3064 dimensions.\cite{Rick04} For systems of 256 water molecules, the
423     calculated densities were on average 0.002 to 0.003~g/cm$^3$ lower. A
424     system size of 256 molecules would force the use of a shorter
425 gezelter 3066 R$_\textrm{c}$ when using the SF technique, and this would also lower
426     the densities. Moving to larger systems, as long as the R$_\textrm{c}$
427     remains at a fixed value, we would expect the densities to remain
428     constant.
429 chrisfen 3064
430 gezelter 3066 \subsection{Liquid Structure of TIP5P-E}\label{sec:t5peLiqStructure}
431 chrisfen 3064
432 gezelter 3068 The experimentally-determined oxygen-oxygen pair correlation function
433     ($g_\textrm{OO}(r)$) for liquid water has been compared in great
434     detail with predictions of the various common water models, and TIP5P
435     was found to be in better agreement than other rigid, non-polarizable
436     models.\cite{Sorenson00} This excellent agreement with experiment was
437     maintained when Rick developed TIP5P-E.\cite{Rick04} To check whether
438     the choice of using the Ewald summation or the SF technique alters the
439     liquid structure, we calculated this correlation function at 298~K and
440     1~atm for the parameters used in the previous section.
441 chrisfen 3064
442     \begin{figure}
443     \includegraphics[width=\linewidth]{./figures/tip5peGofR.pdf}
444 gezelter 3068 \caption{The oxygen-oxygen pair correlation functions calculated for
445 gezelter 3073 TIP5P-E at 298~K and 1~atm while using the Ewald summation
446 chrisfen 3069 (Ref. \citen{Rick04}) and the SF technique with varying
447 gezelter 3068 parameters. Even with the lower densities obtained using the SF
448     technique, the correlation functions are essentially identical.}
449 chrisfen 3064 \label{fig:t5peGofRs}
450     \end{figure}
451 gezelter 3068 The pair correlation functions calculated for TIP5P-E while using the
452     SF technique with various parameters are overlaid on the same function
453     obtained while using the Ewald summation in
454 chrisfen 3064 figure~\ref{fig:t5peGofRs}. The differences in density do not appear
455 gezelter 3068 to have any effect on the liquid structure as the correlation
456     functions are indistinguishable. These results do indicate that
457 chrisfen 3064 $g_\textrm{OO}(r)$ is insensitive to the choice of electrostatic
458     correction.
459    
460 gezelter 3066 \subsection{Thermodynamic Properties of TIP5P-E}\label{sec:t5peThermo}
461 chrisfen 3064
462 gezelter 3066 In addition to the density and structual features of the liquid, there
463     are a variety of thermodynamic quantities that can be calculated for
464     water and compared directly to experimental values. Some of these
465     additional quantities include the latent heat of vaporization ($\Delta
466     H_\textrm{vap}$), the constant pressure heat capacity ($C_p$), the
467     isothermal compressibility ($\kappa_T$), the thermal expansivity
468     ($\alpha_p$), and the static dielectric constant ($\epsilon$). All of
469     these properties were calculated for TIP5P-E with the Ewald summation,
470 gezelter 3068 so they provide a good set of reference data for comparisons involving
471     the SF technique.
472 chrisfen 3064
473     The $\Delta H_\textrm{vap}$ is the enthalpy change required to
474     transform one mole of substance from the liquid phase to the gas
475     phase.\cite{Berry00} In molecular simulations, this quantity can be
476     determined via
477     \begin{equation}
478     \begin{split}
479 gezelter 3066 \Delta H_\textrm{vap} &= H_\textrm{gas} - H_\textrm{liq} \\
480     &= E_\textrm{gas} - E_\textrm{liq}
481     + P(V_\textrm{gas} - V_\textrm{liq}) \\
482     &\approx -\frac{\langle U_\textrm{liq}\rangle}{N}+ RT,
483 chrisfen 3064 \end{split}
484     \label{eq:DeltaHVap}
485     \end{equation}
486 gezelter 3066 where $E$ is the total energy, $U$ is the potential energy, $P$ is the
487 chrisfen 3064 pressure, $V$ is the volume, $N$ is the number of molecules, $R$ is
488     the gas constant, and $T$ is the temperature.\cite{Jorgensen98b} As
489     seen in the last line of equation (\ref{eq:DeltaHVap}), we can
490     approximate $\Delta H_\textrm{vap}$ by using the ideal gas for the gas
491     state. This allows us to cancel the kinetic energy terms, leaving only
492 gezelter 3068 the $U_\textrm{liq}$ term. Additionally, the $PV$ term for the gas is
493 chrisfen 3064 several orders of magnitude larger than that of the liquid, so we can
494 gezelter 3068 neglect the liquid $PV$ term.
495 chrisfen 3064
496     The remaining thermodynamic properties can all be calculated from
497     fluctuations of the enthalpy, volume, and system dipole
498     moment.\cite{Allen87} $C_p$ can be calculated from fluctuations in the
499     enthalpy in constant pressure simulations via
500     \begin{equation}
501     \begin{split}
502 gezelter 3066 C_p = \left(\frac{\partial H}{\partial T}\right)_{N,P}
503 chrisfen 3064 = \frac{(\langle H^2\rangle - \langle H\rangle^2)}{Nk_BT^2},
504     \end{split}
505     \label{eq:Cp}
506     \end{equation}
507     where $k_B$ is Boltzmann's constant. $\kappa_T$ can be calculated via
508     \begin{equation}
509     \begin{split}
510     \kappa_T = \frac{1}{V}\left(\frac{\partial V}{\partial p}\right)_{N,T}
511 chrisfen 3069 = \frac{({\langle V^2\rangle}_{NPT} - {\langle V\rangle}^{2}_{NPT})}
512 gezelter 3066 {k_BT\langle V\rangle_{NPT}},
513 chrisfen 3064 \end{split}
514     \label{eq:kappa}
515     \end{equation}
516     and $\alpha_p$ can be calculated via
517     \begin{equation}
518     \begin{split}
519     \alpha_p = \frac{1}{V}\left(\frac{\partial V}{\partial T}\right)_{N,P}
520 gezelter 3066 = \frac{(\langle VH\rangle_{NPT}
521     - \langle V\rangle_{NPT}\langle H\rangle_{NPT})}
522     {k_BT^2\langle V\rangle_{NPT}}.
523 chrisfen 3064 \end{split}
524     \label{eq:alpha}
525     \end{equation}
526     Using the Ewald sum under tin-foil boundary conditions, $\epsilon$ can
527     be calculated for systems of non-polarizable substances via
528     \begin{equation}
529     \epsilon = 1 + \frac{\langle M^2\rangle}{3\epsilon_0k_\textrm{B}TV},
530     \label{eq:staticDielectric}
531     \end{equation}
532     where $\epsilon_0$ is the permittivity of free space and $\langle
533     M^2\rangle$ is the fluctuation of the system dipole
534     moment.\cite{Allen87} The numerator in the fractional term in equation
535     (\ref{eq:staticDielectric}) is the fluctuation of the simulation-box
536     dipole moment, identical to the quantity calculated in the
537     finite-system Kirkwood $g$ factor ($G_k$):
538     \begin{equation}
539     G_k = \frac{\langle M^2\rangle}{N\mu^2},
540     \label{eq:KirkwoodFactor}
541     \end{equation}
542     where $\mu$ is the dipole moment of a single molecule of the
543     homogeneous system.\cite{Neumann83,Neumann84,Neumann85} The
544     fluctuation term in both equation (\ref{eq:staticDielectric}) and
545 chrisfen 3069 (\ref{eq:KirkwoodFactor}) is calculated as follows,
546 chrisfen 3064 \begin{equation}
547     \begin{split}
548     \langle M^2\rangle &= \langle\bm{M}\cdot\bm{M}\rangle
549     - \langle\bm{M}\rangle\cdot\langle\bm{M}\rangle \\
550     &= \langle M_x^2+M_y^2+M_z^2\rangle
551     - (\langle M_x\rangle^2 + \langle M_x\rangle^2
552     + \langle M_x\rangle^2).
553     \end{split}
554     \label{eq:fluctBoxDipole}
555     \end{equation}
556     This fluctuation term can be accumulated during the simulation;
557     however, it converges rather slowly, thus requiring multi-nanosecond
558     simulation times.\cite{Horn04} In the case of tin-foil boundary
559     conditions, the dielectric/surface term of the Ewald summation is
560 gezelter 3066 equal to zero. Since the SF method also lacks this
561 chrisfen 3064 dielectric/surface term, equation (\ref{eq:staticDielectric}) is still
562     valid for determining static dielectric constants.
563    
564     All of the above properties were calculated from the same trajectories
565     used to determine the densities in section \ref{sec:t5peDensity}
566     except for the static dielectric constants. The $\epsilon$ values were
567     accumulated from 2~ns $NVE$ ensemble trajectories with system densities
568     fixed at the average values from the $NPT$ simulations at each of the
569     temperatures. The resulting values are displayed in figure
570     \ref{fig:t5peThermo}.
571     \begin{figure}
572     \centering
573 gezelter 3067 \includegraphics[width=5.8in]{./figures/t5peThermo.pdf}
574 chrisfen 3064 \caption{Thermodynamic properties for TIP5P-E using the Ewald summation
575 gezelter 3066 and the SF techniques along with the experimental values. Units
576 chrisfen 3064 for the properties are kcal mol$^{-1}$ for $\Delta H_\textrm{vap}$,
577     cal mol$^{-1}$ K$^{-1}$ for $C_p$, 10$^6$ atm$^{-1}$ for $\kappa_T$,
578     and 10$^5$ K$^{-1}$ for $\alpha_p$. Ewald summation results are from
579 chrisfen 3069 reference \citen{Rick04}. Experimental values for $\Delta
580 chrisfen 3064 H_\textrm{vap}$, $\kappa_T$, and $\alpha_p$ are from reference
581 chrisfen 3069 \citen{Kell75}. Experimental values for $C_p$ are from reference
582     \citen{Wagner02}. Experimental values for $\epsilon$ are from reference
583     \citen{Malmberg56}.}
584 chrisfen 3064 \label{fig:t5peThermo}
585     \end{figure}
586    
587 gezelter 3066 For all of the properties computed, the trends with temperature
588     obtained when using the Ewald summation are reproduced with the SF
589     technique. One noticeable difference between the properties calculated
590     using the two methods are the lower $\Delta H_\textrm{vap}$ values
591     when using SF. This is to be expected due to the direct weakening of
592     the electrostatic interaction through forced neutralization. This
593     results in an increase of the intermolecular potential producing lower
594     values from equation (\ref{eq:DeltaHVap}). The slopes of these values
595     with temperature are similar to that seen using the Ewald summation;
596     however, they are both steeper than the experimental trend, indirectly
597     resulting in the inflated $C_p$ values at all temperatures.
598 chrisfen 3064
599     Above the supercooled regime, $C_p$, $\kappa_T$, and $\alpha_p$ values
600     all overlap within error. As indicated for the $\Delta H_\textrm{vap}$
601 gezelter 3066 and $C_p$ results, the deviations between experiment and simulation in
602     this region are not the fault of the electrostatic summation methods
603     but are due to the geometry and parameters of the TIP5P class of water
604     models. Like most rigid, non-polarizable, point-charge water models,
605     the density decreases with temperature at a much faster rate than
606     experiment (see figure \ref{fig:t5peDensities}). This reduced density
607     leads to the inflated compressibility and expansivity values at higher
608     temperatures seen here in figure \ref{fig:t5peThermo}. Incorporation
609     of polarizability and many-body effects are required in order for
610     water models to overcome differences between simulation-based and
611     experimentally determined densities at these higher
612 chrisfen 3064 temperatures.\cite{Laasonen93,Donchev06}
613    
614     At temperatures below the freezing point for experimental water, the
615 gezelter 3066 differences between SF and the Ewald summation results are more
616 chrisfen 3064 apparent. The larger $C_p$ and lower $\alpha_p$ values in this region
617     indicate a more pronounced transition in the supercooled regime,
618 gezelter 3068 particularly in the case of SF without damping. This points to the
619     onset of a more frustrated or glassy behavior for the undamped and
620     weakly-damped SF simulations of TIP5P-E at temperatures below 250~K
621 chrisfen 3069 than is seen from the Ewald sum at these temperatures. Undamped SF
622     electrostatics has a stronger contribution from nearby charges.
623     Damping these local interactions or using a reciprocal-space method
624     makes the water less sensitive to ordering on a shorter length scale.
625     We can recover nearly quantitative agreement with the Ewald results by
626     increasing the damping constant.
627 chrisfen 3064
628     The final thermodynamic property displayed in figure
629     \ref{fig:t5peThermo}, $\epsilon$, shows the greatest discrepancy
630 gezelter 3066 between the Ewald and SF methods (and with experiment). It is known
631     that the dielectric constant is dependent upon and is quite sensitive
632     to the imposed boundary conditions.\cite{Neumann80,Neumann83} This is
633     readily apparent in the converged $\epsilon$ values accumulated for
634     the SF simulations. Lack of a damping function results in dielectric
635 chrisfen 3064 constants significantly smaller than those obtained using the Ewald
636     sum. Increasing the damping coefficient to 0.2~\AA$^{-1}$ improves the
637 gezelter 3085 agreement considerably.
638 chrisfen 3064
639 gezelter 3085 It should be noted that the choice of the ``Ewald coefficient''
640     ($\kappa$) and real-space cutoff values also have a significant effect
641     on the calculated static dielectric constant when using the Ewald
642     summation. In general, aqueous systems with larger screening
643     parameters will report larger values for the dielectric constant, the
644     same behavior we see here with SF. Although the received wisdom
645     (CITATION) on the Ewald parameter is that large enough Fourier-space
646     grids can make up for the effects of overdamping the real-space
647     portion of the Ewald sum, this wisdom does not appear to be borne out
648     by actual numerical results. To illustrate this point, we have
649     computed the static dielectric constants from 216-molecule SPC water
650     simulations (9 \AA\ cutoff radius, 3 ns data collection times, PME
651     with fourth-order spline to smooth the reciprocal space portion of the
652     sum). We carried out these simulations with a range of different
653     Ewald coefficients. For each value of the Ewald coefficient, we also
654     varied the number of Fourier vectors used to compute the $k$-space
655     sum. At the largest Fourier-grid (48x48x48 Fourier-vectors), this
656     corresponds to a 0.39 \AA\ grid spacing. The results for these
657     calculations are shown in figure \ref{fig:ewaldDielectric}.
658    
659     \begin{figure}
660     \includegraphics[width=\linewidth]{./figures/ewaldDielectric.pdf}
661     \caption{The dielectric constant of the SPC water model using the Ewald
662     summation as a function of ({\it left}) the Ewald coefficient
663     ($\kappa$) and ({\it right}) the $k$-Space grid detail. All
664     calculations were performed with a 216 water molecule system using a
665     fixed cutoff radius of 9 \AA\ at 300 K.}
666     \label{fig:ewaldDielectric}
667     \end{figure}
668    
669     It is clear that the choice of the Ewald coefficient actually does
670     have a dramatic effect on the static dielectric of water, and that
671     increasing the Fourier grid to 3 times the typical value does not
672     bring these dielectric constants back into agreement with each other.
673     It should be noted that this behavior would be troubling in {\it any}
674     method for calculating electrostatic interactions. Ideally, a method
675     should give fixed values for important properties like the static
676     dielectric and should be insensitive to the choice of convergence
677     parameters like the Ewald coefficient and $\alpha$. From what we have
678     observed, neither the Ewald summation nor the real-space shifted
679     methods appear to be ``black boxes'' at this point. Both require
680     careful consideration of the choice of parameters on the property
681     being studied.
682    
683 gezelter 3068 \subsection{Optimal Damping Coefficients for Damped
684     Electrostatics}\label{sec:t5peDielectric}
685 chrisfen 3064
686 gezelter 3066 In the previous section, we observed that the choice of damping
687     coefficient plays a major role in the calculated dielectric constant
688     for the SF method. Similar damping parameter behavior was observed in
689     the long-time correlated motions of the NaCl crystal.\cite{Fennell06}
690     The static dielectric constant is calculated from the long-time
691     fluctuations of the system's accumulated dipole moment
692     (Eq. (\ref{eq:staticDielectric})), so it is quite sensitive to the
693     choice of damping parameter. Since $\alpha$ is an adjustable
694     parameter, it would be best to choose optimal damping constants such
695     that any arbitrary choice of cutoff radius will properly capture the
696     dielectric behavior of the liquid.
697 chrisfen 3064
698     In order to find these optimal values, we mapped out the static
699     dielectric constant as a function of both the damping parameter and
700 gezelter 3066 cutoff radius for TIP5P-E and for a point-dipolar water model
701     (SSD/RF). To calculate the static dielectric constant, we performed
702     5~ns $NPT$ calculations on systems of 512 water molecules and averaged
703 gezelter 3073 over the converged region (typically the latter 2.5~ns) of equation
704 gezelter 3066 (\ref{eq:staticDielectric}). The selected cutoff radii ranged from 9,
705     10, 11, and 12~\AA , and the damping parameter values ranged from 0.1
706     to 0.35~\AA$^{-1}$.
707 chrisfen 3064
708     \begin{table}
709     \centering
710 gezelter 3066 \caption{Static dielectric constants for the TIP5P-E and SSD/RF water models at 298~K and 1~atm as a function of damping coefficient $\alpha$ and
711     cutoff radius $R_\textrm{c}$. The color scale ranges from blue (10) to red (100).}
712 chrisfen 3064 \vspace{6pt}
713 gezelter 3066 \begin{tabular}{ lccccccccc }
714 chrisfen 3064 \toprule
715     \toprule
716 gezelter 3066 & \multicolumn{4}{c}{TIP5P-E} & & \multicolumn{4}{c}{SSD/RF} \\
717     & \multicolumn{4}{c}{$R_\textrm{c}$ (\AA )} & & \multicolumn{4}{c}{$R_\textrm{c}$ (\AA )} \\
718     \cmidrule(lr){2-5} \cmidrule(lr){7-10}
719     $\alpha$ (\AA$^{-1}$) & 9 & 10 & 11 & 12 & & 9 & 10 & 11 & 12 \\
720 chrisfen 3064 \midrule
721 gezelter 3066 0.35 & \cellcolor[rgb]{1, 0.788888888888889, 0.5} 87.0 & \cellcolor[rgb]{1, 0.695555555555555, 0.5} 91.2 & \cellcolor[rgb]{1, 0.717777777777778, 0.5} 90.2 & \cellcolor[rgb]{1, 0.686666666666667, 0.5} 91.6 & & \cellcolor[rgb]{1, 0.5, 0.5} 116 & \cellcolor[rgb]{1, 0.5, 0.5} 119.2 & \cellcolor[rgb]{1, 0.5, 0.5} 131.4 & \cellcolor[rgb]{1, 0.5, 0.5} 130 \\
722     & \cellcolor[rgb]{1, 0.892222222222222, 0.5} & \cellcolor[rgb]{1, 0.704444444444444, 0.5} & \cellcolor[rgb]{1, 0.72, 0.5} & \cellcolor[rgb]{1, 0.6666666666667, 0.5} & & \cellcolor[rgb]{1, 0.5, 0.5} & \cellcolor[rgb]{1, 0.5, 0.5} & \cellcolor[rgb]{1, 0.5, 0.5} & \cellcolor[rgb]{1, 0.5, 0.5} \\
723     0.3 & \cellcolor[rgb]{1, 0.995555555555556, 0.5} 77.7 & \cellcolor[rgb]{1, 0.713333333333333, 0.5} 90.4 & \cellcolor[rgb]{1, 0.713333333333333, 0.5} 90.4 & \cellcolor[rgb]{1, 0.646666666666667, 0.5} 93.4 & & \cellcolor[rgb]{1, 0.5, 0.5} 100 & \cellcolor[rgb]{1, 0.5, 0.5} 118.8 & \cellcolor[rgb]{1, 0.5, 0.5} 116 & \cellcolor[rgb]{1, 0.5, 0.5} 122 \\
724     0.275 & \cellcolor[rgb]{0.653333333333333, 1, 0.5} 61.9 & \cellcolor[rgb]{1, 0.933333333333333, 0.5} 80.5 & \cellcolor[rgb]{1, 0.811111111111111, 0.5} 86.0 & \cellcolor[rgb]{1, 0.766666666666667, 0.5} 88 & & \cellcolor[rgb]{1, 1, 0.5} 77.5 & \cellcolor[rgb]{1, 0.5, 0.5} 105 & \cellcolor[rgb]{1, 0.5, 0.5} 118 & \cellcolor[rgb]{1, 0.5, 0.5} 125.2 \\
725     0.25 & \cellcolor[rgb]{0.537777777777778, 1, 0.5} 56.7 & \cellcolor[rgb]{0.795555555555555, 1, 0.5} 68.3 & \cellcolor[rgb]{1, 0.966666666666667, 0.5} 79 & \cellcolor[rgb]{1, 0.704444444444445, 0.5} 90.8 & & \cellcolor[rgb]{0.5, 1, 0.582222222222222} 51.3 & \cellcolor[rgb]{1, 0.993333333333333, 0.5} 77.8 & \cellcolor[rgb]{1, 0.522222222222222, 0.5} 99 & \cellcolor[rgb]{1, 0.5, 0.5} 113 \\
726     0.225 & \cellcolor[rgb]{0.5, 1, 0.768888888888889} 42.9 & \cellcolor[rgb]{0.566666666666667, 1, 0.5} 58.0 & \cellcolor[rgb]{0.693333333333333, 1, 0.5} 63.7 & \cellcolor[rgb]{1, 0.937777777777778, 0.5} 80.3 & & \cellcolor[rgb]{0.5, 0.984444444444444, 1} 31.8 & \cellcolor[rgb]{0.5, 1, 0.586666666666667} 51.1 & \cellcolor[rgb]{1, 0.995555555555556, 0.5} 77.7 & \cellcolor[rgb]{1, 0.5, 0.5} 108.1 \\
727     0.2 & \cellcolor[rgb]{0.5, 0.973333333333333, 1} 31.3 & \cellcolor[rgb]{0.5, 1, 0.842222222222222} 39.6 & \cellcolor[rgb]{0.54, 1, 0.5} 56.8 & \cellcolor[rgb]{0.735555555555555, 1, 0.5} 65.6 & & \cellcolor[rgb]{0.5, 0.698666666666667, 1} 18.94 & \cellcolor[rgb]{0.5, 0.946666666666667, 1} 30.1 & \cellcolor[rgb]{0.5, 1, 0.704444444444445} 45.8 & \cellcolor[rgb]{0.893333333333333, 1, 0.5} 72.7 \\
728     & \cellcolor[rgb]{0.5, 0.848888888888889, 1} & \cellcolor[rgb]{0.5, 0.973333333333333, 1} & \cellcolor[rgb]{0.5, 1, 0.793333333333333} & \cellcolor[rgb]{0.5, 1, 0.624444444444445} & & \cellcolor[rgb]{0.5, 0.599333333333333, 1} & \cellcolor[rgb]{0.5, 0.732666666666667, 1} & \cellcolor[rgb]{0.5, 0.942111111111111, 1} & \cellcolor[rgb]{0.5, 1, 0.695555555555556} \\
729     0.15 & \cellcolor[rgb]{0.5, 0.724444444444444, 1} 20.1 & \cellcolor[rgb]{0.5, 0.788888888888889, 1} 23.0 & \cellcolor[rgb]{0.5, 0.873333333333333, 1} 26.8 & \cellcolor[rgb]{0.5, 1, 0.984444444444444} 33.2 & & \cellcolor[rgb]{0.5, 0.5, 1} 8.29 & \cellcolor[rgb]{0.5, 0.518666666666667, 1} 10.84 & \cellcolor[rgb]{0.5, 0.588666666666667, 1} 13.99 & \cellcolor[rgb]{0.5, 0.715555555555556, 1} 19.7 \\
730     & \cellcolor[rgb]{0.5, 0.696111111111111, 1} & \cellcolor[rgb]{0.5, 0.736333333333333, 1} & \cellcolor[rgb]{0.5, 0.775222222222222, 1} & \cellcolor[rgb]{0.5, 0.860666666666667, 1} & & \cellcolor[rgb]{0.5, 0.5, 1} & \cellcolor[rgb]{0.5, 0.509333333333333, 1} & \cellcolor[rgb]{0.5, 0.544333333333333, 1} & \cellcolor[rgb]{0.5, 0.607777777777778, 1} \\
731     0.1 & \cellcolor[rgb]{0.5, 0.667777777777778, 1} 17.55 & \cellcolor[rgb]{0.5, 0.683777777777778, 1} 18.27 & \cellcolor[rgb]{0.5, 0.677111111111111, 1} 17.97 & \cellcolor[rgb]{0.5, 0.705777777777778, 1} 19.26 & & \cellcolor[rgb]{0.5, 0.5, 1} 4.96 & \cellcolor[rgb]{0.5, 0.5, 1} 5.46 & \cellcolor[rgb]{0.5, 0.5, 1} 6.04 & \cellcolor[rgb]{0.5,0.5, 1} 6.82 \\
732 chrisfen 3064 \bottomrule
733     \end{tabular}
734 gezelter 3066 \label{tab:DielectricMap}
735 chrisfen 3064 \end{table}
736 gezelter 3066
737 chrisfen 3064 The results of these calculations are displayed in table
738 gezelter 3066 \ref{tab:DielectricMap}. The dielectric constants for both models
739 chrisfen 3069 decrease with increasing cutoff radii ($R_\textrm{c}$) and increase
740     with increasing damping ($\alpha$). Another point to note is that
741     choosing $\alpha$ and $R_\textrm{c}$ identical to those used with the
742     Ewald summation results in the same calculated dielectric constant. As
743     an example, in the paper outlining the development of TIP5P-E, the
744     real-space cutoff and Ewald coefficient were tethered to the system
745     size, and for a 512 molecule system are approximately 12~\AA\ and
746     0.25~\AA$^{-1}$ respectively.\cite{Rick04} These parameters resulted
747     in a dielectric constant of 92$\pm$14, while with SF these parameters
748     give a dielectric constant of 90.8$\pm$0.9. Another example comes from
749     the TIP4P-Ew paper where $\alpha$ and $R_\textrm{c}$ were chosen to be
750     9.5~\AA\ and 0.35~\AA$^{-1}$, and these parameters resulted in a
751     dielectric constant equal to 63$\pm$1.\cite{Horn04} Calculations using
752     SF with these parameters and this water model give a dielectric
753     constant of 61$\pm$1. Since the dielectric constant is dependent on
754     $\alpha$ and $R_\textrm{c}$ with the SF technique, it might be
755     interesting to investigate the dependence of the static dielectric
756     constant on the choice of convergence parameters ($R_\textrm{c}$ and
757     $\kappa$) utilized in most implementations of the Ewald sum.
758 chrisfen 3064
759 gezelter 3068 It is also apparent from this table that electrostatic damping has a
760     more pronounced effect on the dipolar interactions of SSD/RF than the
761     monopolar interactions of TIP5P-E. The dielectric constant covers a
762     much wider range and has a steeper slope with increasing damping
763     parameter.
764 gezelter 3066
765     Although it is tempting to choose damping parameters equivalent to the
766 gezelter 3068 Ewald examples to obtain quantitative agreement, the results of our
767     previous work indicate that values this high are destructive to both
768     the energetics and dynamics.\cite{Fennell06} Ideally, $\alpha$ should
769     not exceed 0.3~\AA$^{-1}$ for any of the cutoff values in this
770 gezelter 3085 range.
771 gezelter 3066
772 gezelter 3085 It is possible to use a simple energetic criterion for choosing an
773     optimal value of $\alpha$ given a cutoff radius ($R_\textrm{c}$) and
774     an energetic tolerance. This is identical to how the Ewald
775     coefficient ($\kappa$) is chosen in many of the common simulation
776     packages (GROMACS,\cite{Gromacs} AMBER,\cite{AMBER} and
777     TINKER~\cite{TINKER}). In the case of the damped method described in
778     this work, the value of the tolerance,
779     \begin{equation}
780     \textrm{tolerance} = \frac{V_\textrm{damped}(R_\textrm{c})}{V_\textrm{coulomb}(R_\textrm{c})}
781     = \textrm{erfc}(\alpha R_\textrm{c}),
782     \end{equation}
783     which does best at reproducing the static dielectric constant in a
784     variety of water models is $3.1~\times~10^{-4}$. Using this
785     tolerance, good choices of $\alpha$ for cutoff radii of 9 and 12
786     \AA\ are 0.2834 and 0.2125 \AA$^{-1}$, respectively.
787 gezelter 3066
788 gezelter 3068 As a final note on optimal damping parameters, aside from a slight
789 gezelter 3085 lowering of $\Delta H_\textrm{vap}$, using optimal $\alpha$ values
790     does not alter any of the other thermodynamic properties.
791 chrisfen 3064
792 gezelter 3067 \subsection{Dynamic Properties of TIP5P-E}\label{sec:t5peDynamics}
793 chrisfen 3064
794 gezelter 3068 To look at the dynamic properties of TIP5P-E when using the SF method,
795     200~ps $NVE$ simulations were performed for each temperature at the
796     average density obtained from the $NPT$ simulations. $R_\textrm{c}$
797     values of 9 and 12~\AA\ and the ideal $\alpha$ values determined above
798 gezelter 3085 (0.2834 and 0.2125~\AA$^{-1}$) were used for the damped
799 gezelter 3068 electrostatics. The self-diffusion constants (D) were calculated from
800     linear fits to the long-time portion of the mean square displacement
801     ($\langle r^{2}(t) \rangle$).\cite{Allen87}
802 chrisfen 3064
803     In addition to translational diffusion, orientational relaxation times
804     were calculated for comparisons with the Ewald simulations and with
805     experiments. These values were determined from the same 200~ps $NVE$
806     trajectories used for translational diffusion by calculating the
807     orientational time correlation function,
808     \begin{equation}
809 chrisfen 3069 C_l^\alpha(t) = \left\langle P_l\left[\hat{\mathbf{u}}_i^\gamma(t)
810     \cdot\hat{\mathbf{u}}_i^\gamma(0)\right]\right\rangle,
811 chrisfen 3064 \label{eq:OrientCorr}
812     \end{equation}
813     where $P_l$ is the Legendre polynomial of order $l$ and
814     $\hat{\mathbf{u}}_i^\alpha$ is the unit vector of molecule $i$ along
815 chrisfen 3069 axis $\gamma$. The body-fixed reference frame used for our
816 gezelter 3067 orientational correlation functions has the $z$-axis running along the
817     HOH bisector, and the $y$-axis connecting the two hydrogen atoms.
818     $C_l^y$ is therefore calculated from the time evolution of a vector of
819     unit length pointing between the two hydrogen atoms.
820 chrisfen 3064
821     From the orientation autocorrelation functions, we can obtain time
822 gezelter 3067 constants for rotational relaxation. The relatively short time
823 chrisfen 3064 portions (between 1 and 3~ps for water) of these curves can be fit to
824     an exponential decay to obtain these constants, and they are directly
825     comparable to water orientational relaxation times from nuclear
826     magnetic resonance (NMR). The relaxation constant obtained from
827     $C_2^y(t)$ is of particular interest because it describes the
828     relaxation of the principle axis connecting the hydrogen atoms. Thus,
829     $C_2^y(t)$ can be compared to the intermolecular portion of the
830     dipole-dipole relaxation from a proton NMR signal and should provide
831     the best estimate of the NMR relaxation time constant.\cite{Impey82}
832    
833     \begin{figure}
834     \centering
835 gezelter 3067 \includegraphics[width=5.8in]{./figures/t5peDynamics.pdf}
836 chrisfen 3064 \caption{Diffusion constants ({\it upper}) and reorientational time
837 gezelter 3066 constants ({\it lower}) for TIP5P-E using the Ewald sum and SF
838 chrisfen 3064 technique compared with experiment. Data at temperatures less than
839     0$^\circ$C were not included in the $\tau_2^y$ plot to allow for
840     easier comparisons in the more relevant temperature regime.}
841     \label{fig:t5peDynamics}
842     \end{figure}
843     Results for the diffusion constants and orientational relaxation times
844     are shown in figure \ref{fig:t5peDynamics}. From this figure, it is
845     apparent that the trends for both $D$ and $\tau_2^y$ of TIP5P-E using
846 gezelter 3066 the Ewald sum are reproduced with the SF technique. The enhanced
847 gezelter 3067 diffusion (relative to experiment) at high temperatures are again the
848     product of the lower simulated densities and do not provide any
849     special insight into differences between the electrostatic summation
850 gezelter 3068 techniques. Though not apparent in this figure, SF values at the
851     lowest temperature are approximately twice as slow as $D$ values
852     obtained using the Ewald sum. These values support the observation
853     from section \ref{sec:t5peThermo} that the SF simulations result in a
854     slightly more viscous supercooled region than is obtained using the
855     Ewald sum.
856 chrisfen 3064
857     The $\tau_2^y$ results in the lower frame of figure
858 gezelter 3067 \ref{fig:t5peDynamics} show a much greater difference between the SF
859     results and the Ewald results. At all temperatures shown, TIP5P-E
860 chrisfen 3064 relaxes faster than experiment with the Ewald sum while tracking
861 chrisfen 3069 experiment fairly well when using the SF technique (independent of the
862     choice of damping constant). There are several possible reasons for
863 gezelter 3067 this deviation between techniques. The Ewald results were calculated
864 chrisfen 3069 using shorter trajectories (10~ps) than the SF results (200~ps).
865     Calculation of these SF values from 10~ps trajectories (with
866 gezelter 3068 subsequently lower accuracy) showed a 0.4~ps drop in $\tau_2^y$,
867 gezelter 3067 placing the result more in line with that obtained using the Ewald
868 gezelter 3068 sum. Recomputing correlation times to meet a lower statistical
869     standard is counter-productive, however. Assuming the Ewald results
870     are not entirely the product of poor statistics, differences in
871     techniques to integrate the orientational motion could also play a
872     role. {\sc shake} is the most commonly used technique for
873     approximating rigid-body orientational motion,\cite{Ryckaert77}
874     whereas in {\sc oopse}, we maintain and integrate the entire rotation
875     matrix using the {\sc dlm} method.\cite{Meineke05} Since {\sc shake}
876     is an iterative constraint technique, if the convergence tolerances
877     are raised for increased performance, error will accumulate in the
878     orientational motion. Finally, the Ewald results were calculated using
879     the $NVT$ ensemble, while the $NVE$ ensemble was used for SF
880     calculations. The motion due to the extended variable (the thermostat)
881     will always alter the dynamics, resulting in differences between $NVT$
882     and $NVE$ results. These differences are increasingly noticeable as
883     the time constant for the thermostat decreases.
884 chrisfen 3064
885 gezelter 3067 \subsection{Comparison of Reaction Field and Damped Electrostatics for
886     SSD/RF}
887 chrisfen 3064
888 gezelter 3068 SSD/RF was parametrized for use with a reaction field, which is a
889     common and relatively inexpensive way of handling long-range
890     electrostatic corrections in dipolar systems.\cite{Onsager36}
891     Although there is no reason to expect that damped electrostatics will
892     behave in a similar fashion to the reaction field, it is well known
893     that model that are parametrized for use with Ewald do better than
894     unoptimized models under the influence of a reaction
895     field.\cite{Rick04} We compared a number of properties of SSD/RF that
896     had previously been computed using a reaction field with those same
897     values under damped electrostatics.
898 chrisfen 3064
899 chrisfen 3069 The properties shown in table \ref{tab:dampedSSDRF} show that using
900     damped electrostatics can result in even better agreement with
901     experiment than is obtained via reaction field. The average density
902     shows a modest increase when using damped electrostatics in place of
903     the reaction field. This comes about because we neglect the pressure
904     effect due to the surroundings outside of the cutoff, instead relying
905     on screening effects to neutralize electrostatic interactions at long
906 gezelter 3068 distances. The $C_p$ also shows a slight increase, indicating greater
907     fluctuation in the enthalpy at constant pressure. The only other
908     differences between the damped electrostatics and the reaction field
909     results are the dipole reorientational time constants, $\tau_1$ and
910     $\tau_2$. When using damped electrostatics, the water molecules relax
911     more quickly and exhibit behavior closer to the experimental
912     values. These results indicate that since there is no need to specify
913     an external dielectric constant with the damped electrostatics, it is
914     almost certainly a better choice for dipolar simulations than the
915 chrisfen 3069 reaction field method. Additionally, by using damped electrostatics
916     instead of reaction field, SSD/RF can be used effectively with mixed
917     charge / dipolar systems, such as dissolved ions, dissolved organic
918     molecules, or even proteins.
919 chrisfen 3064
920     \begin{table}
921 gezelter 3068 \caption{Properties of SSD/RF when using reaction field or damped
922     electrostatics. Simulations were carried out at 298~K, 1~atm, and
923     with 512 molecules.}
924 chrisfen 3064 \footnotesize
925     \centering
926     \begin{tabular}{ llccc }
927     \toprule
928     \toprule
929 gezelter 3068 & & Reaction Field (Ref. \citen{Fennell04}) & Damped Electrostatics &
930     Experiment [Ref.] \\
931 chrisfen 3064 & & $\epsilon = 80$ & $R_\textrm{c} = 12$\AA ; $\alpha = 0.2125$~\AA$^{-1}$ & \\
932     \midrule
933     $\rho$ & (g cm$^{-3}$) & 0.997(1) & 1.004(4) & 0.997 [\citen{CRC80}]\\
934     $C_p$ & (cal mol$^{-1}$ K$^{-1}$) & 23.8(2) & 27(1) & 18.005 [\citen{Wagner02}] \\
935     $D$ & ($10^{-5}$ cm$^2$ s$^{-1}$) & 2.32(6) & 2.33(2) & 2.299 [\citen{Mills73}]\\
936     $n_C$ & & 4.4 & 4.2 & 4.7 [\citen{Hura00}]\\
937     $n_H$ & & 3.7 & 3.7 & 3.5 [\citen{Soper86}]\\
938     $\tau_1$ & (ps) & 7.2(4) & 5.86(8) & 5.7 [\citen{Eisenberg69}]\\
939     $\tau_2$ & (ps) & 3.2(2) & 2.45(7) & 2.3 [\citen{Krynicki66}]\\
940     \bottomrule
941     \end{tabular}
942     \label{tab:dampedSSDRF}
943     \end{table}
944    
945 gezelter 3067 \subsection{Predictions of Ice Polymorph Stability}
946 chrisfen 3064
947 gezelter 3068 In an earlier paper, we performed a series of free energy calculations
948 chrisfen 3064 on several ice polymorphs which are stable or metastable at low
949     pressures, one of which (Ice-$i$) we observed in spontaneous
950 gezelter 3068 crystallizations of an early version of the SSD/RF water
951     model.\cite{Fennell05} In this study, a distinct dependence of the
952     computed free energies on the cutoff radius and electrostatic
953     summation method was observed. Since the SF technique can be used as
954     a simple and efficient replacement for the Ewald summation, our final
955     test of this method is to see if it is capable of addressing the
956     spurious stability of the Ice-$i$ phases with the various common water
957     models. To this end, we have performed thermodynamic integrations of
958     all of the previously discussed ice polymorphs using the SF technique
959     with a cutoff radius of 12~\AA\ and an $\alpha$ of 0.2125~\AA . These
960     calculations were performed on TIP5P-E and TIP4P-Ew (variants of the
961     TIP5P and TIP4P models optimized for the Ewald summation) as well as
962     SPC/E and SSD/RF.
963 chrisfen 3064
964     \begin{table}
965     \centering
966     \caption{Helmholtz free energies of ice polymorphs at 1~atm and 200~K
967 gezelter 3066 using the damped SF electrostatic correction method with a
968 chrisfen 3064 variety of water models.}
969     \begin{tabular}{ lccccc }
970     \toprule
971     \toprule
972     Model & I$_\textrm{h}$ & I$_\textrm{c}$ & B & Ice-$i$ & Ice-$i^\prime$ \\
973     \cmidrule(lr){2-6}
974     & \multicolumn{5}{c}{(kcal mol$^{-1}$)} \\
975     \midrule
976     TIP5P-E & -11.98(4) & -11.96(4) & -11.87(3) & - & -11.95(3) \\
977     TIP4P-Ew & -13.11(3) & -13.09(3) & -12.97(3) & - & -12.98(3) \\
978     SPC/E & -12.99(3) & -13.00(3) & -13.03(3) & - & -12.99(3) \\
979     SSD/RF & -11.83(3) & -11.66(4) & -12.32(3) & -12.39(3) & - \\
980     \bottomrule
981     \end{tabular}
982     \label{tab:dampedFreeEnergy}
983     \end{table}
984     The results of these calculations in table \ref{tab:dampedFreeEnergy}
985 gezelter 3067 show similar behavior to the Ewald results in the previous
986     study.\cite{Fennell05} The Helmholtz free energies of the ice
987     polymorphs with SSD/RF order in the same fashion, with Ice-$i$ having
988     the lowest free energy; however, the Ice-$i$ and ice B free energies
989     are quite a bit closer (nearly isoenergetic). The SPC/E results show
990 gezelter 3068 the different polymorphs to be nearly isoenergetic. This is the same
991     behavior observed using an Ewald correction.\cite{Fennell05} Ice B has
992     the lowest Helmholtz free energy for SPC/E; however, all the polymorph
993     results overlap within the error estimates.
994 chrisfen 3064
995     The most interesting results from these calculations come from the
996     more expensive TIP4P-Ew and TIP5P-E results. Both of these models were
997     optimized for use with an electrostatic correction and are
998 gezelter 3067 geometrically arranged to mimic water using drastically different
999 gezelter 3068 charge distributions. In TIP5P-E, the primary location for the
1000 gezelter 3067 negative charge in the molecule is assigned to the lone-pairs of the
1001     oxygen, while TIP4P-Ew places the negative charge near the
1002     center-of-mass along the H-O-H bisector. There is some debate as to
1003     which is the proper choice for the negative charge location, and this
1004     has in part led to a six-site water model that balances both of these
1005     options.\cite{Vega05,Nada03} The limited results in table
1006     \ref{tab:dampedFreeEnergy} support the results of Vega {\it et al.},
1007 gezelter 3068 which indicate the TIP4P charge location geometry performs better
1008     under some circumstances.\cite{Vega05} With the TIP4P-Ew water model,
1009     the experimentally observed polymorph (ice I$_\textrm{h}$) is the
1010     preferred form with ice I$_\textrm{c}$ slightly higher in energy,
1011     though overlapping within error. Additionally, the spurious ice B and
1012     Ice-$i^\prime$ structures are destabilized relative to these
1013     polymorphs. TIP5P-E shows similar behavior to SPC/E, where there is no
1014     real free energy distinction between the various polymorphs. While ice
1015     B is close in free energy to the other polymorphs, these results fail
1016     to support the findings of other researchers indicating the preferred
1017     form of TIP5P at 1~atm is a structure similar to ice
1018     B.\cite{Yamada02,Vega05,Abascal05} It should be noted that we were
1019     looking at TIP5P-E rather than TIP5P, and the differences in the
1020     Lennard-Jones parameters could cause this discrepancy. Overall, these
1021     results indicate that TIP4P-Ew is a better mimic of the solid forms of
1022     water than some of the other models.
1023 chrisfen 3064
1024     \section{Conclusions}
1025    
1026 gezelter 3067 This investigation of pairwise electrostatic summation techniques
1027     shows that there is a viable and computationally efficient alternative
1028 chrisfen 3069 to the Ewald summation. The SF method (equation (\ref{eq:DSFPot}))
1029     has proven itself capable of reproducing structural, thermodynamic,
1030     and dynamic quantities that are nearly quantitative matches to results
1031 gezelter 3067 from far more expensive methods. Additionally, we have now extended
1032     the damping formalism to electrostatic multipoles, so the damped SF
1033     potential can be used in systems that contain mixtures of charges and
1034     point multipoles.
1035    
1036 gezelter 3085 We have also provided a simple prescription for choosing optimal
1037     damping parameters given a choice of cutoff radius. The damping
1038     parameters were chosen to obtain a static dielectric constant as close
1039     as possible to the experimental value, which should be useful for
1040     simulating the electrostatic screening properties of liquid water
1041     accurately. The formula for optimal damping was the same for a
1042     complicated multipoint model as it was for a simple point-dipolar
1043     model, and is identical to energetic tolerance methods commonly used
1044     to choose the Ewald coefficient.
1045 gezelter 3067
1046     As in all purely pairwise cutoff methods, the damped SF method is
1047     expected to scale approximately {\it linearly} with system size, and
1048     is easily parallelizable. This should result in substantial
1049     reductions in the computational cost of performing large simulations.
1050     With the proper use of pre-computation and spline interpolation, the
1051 gezelter 3068 damped SF method is essentially the same cost as a simple real-space
1052 gezelter 3067 cutoff.
1053    
1054     We are not suggesting that there is any flaw with the Ewald sum; in
1055     fact, it is the standard by which the damped SF method has been
1056     judged. However, these results provide further evidence that in the
1057     typical simulations performed today, the Ewald summation may no longer
1058     be required to obtain the level of accuracy most researchers have come
1059     to expect.
1060    
1061 chrisfen 3064 \section{Acknowledgments}
1062     Support for this project was provided by the National Science
1063     Foundation under grant CHE-0134881. Computation time was provided by
1064 gezelter 3067 the Notre Dame Center for Research Computing. The authors would like
1065     to thank Steve Corcelli and Ed Maginn for helpful discussions and
1066     comments.
1067 chrisfen 3064
1068     \newpage
1069    
1070     \bibliographystyle{achemso}
1071     \bibliography{multipoleSFPaper}
1072    
1073    
1074     \end{document}