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Revision 3222 by chuckv, Tue Sep 11 15:23:24 2007 UTC vs.
Revision 3228 by chuckv, Fri Sep 21 21:31:25 2007 UTC

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1  
2 < %% Created for Charles Vardeman at 2007-09-10 16:34:07 -0400
2 > %% Created for Charles Vardeman at 2007-09-21 13:01:24 -0400
3  
4  
5   %% Saved with string encoding Western (ASCII)
6 +
7 +
8 +
9 + @article{nose:1803,
10 +        Author = {Shuichi Nose and Fumiko Yonezawa},
11 +        Date-Added = {2007-09-21 13:00:58 -0400},
12 +        Date-Modified = {2007-09-21 13:01:18 -0400},
13 +        Doi = {10.1063/1.450427},
14 +        Journal = {The Journal of Chemical Physics},
15 +        Keywords = {LENNARDJONES POTENTIAL; COMPUTERIZED SIMULATION; MELTING; CRYSTALLIZATION; MOLECULAR DYNAMICS CALCULATION; LIQUID STRUCTURE; NUCLEATION; MATHEMATICAL MODELS},
16 +        Local-Url = {file://localhost/Users/charles/Documents/Papers/JChemPhys_84_1803.pdf},
17 +        Number = {3},
18 +        Pages = {1803-1814},
19 +        Publisher = {AIP},
20 +        Title = {Isothermal--isobaric computer simulations of melting and crystallization of a Lennard-Jones system},
21 +        Url = {http://link.aip.org/link/?JCP/84/1803/1},
22 +        Volume = {84},
23 +        Year = {1986}}
24 +
25 + @article{hsu:4974,
26 +        Author = {C. S. Hsu and Aneesur Rahman},
27 +        Date-Added = {2007-09-21 12:52:21 -0400},
28 +        Date-Modified = {2007-09-21 12:52:40 -0400},
29 +        Doi = {10.1063/1.438311},
30 +        Journal = {The Journal of Chemical Physics},
31 +        Keywords = {NUCLEATION; SYMMETRY; INTERATOMIC FORCES; RUBIDIUM; LENNARD=(HYPHEN)=JONES POTENTIAL; CORRELATIONS; CRYSTALS},
32 +        Local-Url = {file://localhost/Users/charles/Documents/Papers/JChemPhys_71_4974.pdf},
33 +        Number = {12},
34 +        Pages = {4974-4986},
35 +        Publisher = {AIP},
36 +        Title = {Interaction potentials and their effect on crystal nucleation and symmetry},
37 +        Url = {http://link.aip.org/link/?JCP/71/4974/1},
38 +        Volume = {71},
39 +        Year = {1979}}
40 +
41 + @article{PhysRevLett.53.1951,
42 +        Author = {Shechtman, D. and Blech, I. and Gratias, D. and Cahn, J. W.},
43 +        Date-Added = {2007-09-20 17:44:19 -0400},
44 +        Date-Modified = {2007-09-20 17:44:57 -0400},
45 +        Doi = {10.1103/PhysRevLett.53.1951},
46 +        Journal = {Phys. Rev. Lett.},
47 +        Local-Url = {file://localhost/Users/charles/Documents/Papers/p1951_1.pdf},
48 +        Month = {Nov},
49 +        Number = {20},
50 +        Numpages = {2},
51 +        Pages = {1951--1953},
52 +        Publisher = {American Physical Society},
53 +        Title = {Metallic Phase with Long-Range Orientational Order and No Translational Symmetry},
54 +        Volume = {53},
55 +        Year = {1984}}
56 +
57 + @article{PhysRevLett.56.1168,
58 +        Author = {Stephens, Peter W. and Goldman, Alan I.},
59 +        Date-Added = {2007-09-20 17:35:02 -0400},
60 +        Date-Modified = {2007-09-20 17:35:08 -0400},
61 +        Doi = {10.1103/PhysRevLett.56.1168},
62 +        Journal = {Phys. Rev. Lett.},
63 +        Local-Url = {file://localhost/Users/charles/Documents/Papers/p1168_1.pdf},
64 +        Month = {Mar},
65 +        Number = {11},
66 +        Numpages = {3},
67 +        Pages = {1168--1171},
68 +        Publisher = {American Physical Society},
69 +        Title = {Sharp Diffraction Maxima from an Icosahedral Glass},
70 +        Volume = {56},
71 +        Year = {1986}}
72 +
73 + @article{HOARE:1976fk,
74 +        Author = {HOARE, M},
75 +        Date-Added = {2007-09-20 16:52:33 -0400},
76 +        Date-Modified = {2007-09-20 16:52:37 -0400},
77 +        Journal = {Annals of the New York Academy of Sciences},
78 +        Pages = {186-207},
79 +        Title = {STABILITY AND LOCAL ORDER IN SIMPLE AMORPHOUS PACKINGS},
80 +        Volume = {279},
81 +        Year = {1976}}
82 +
83 + @article{19871127,
84 +        Abstract = {Numerous examples of metallic alloys have been discovered, the atomic structures of which display an icosahedral symmetry that is impossible for ordinary periodic crystals. Recent experimental results support the hypothesis that the alloys are examples of a new ``quasicrystal'' phase of solid matter. Observed deviations from an ideal quasicrystal structure can be explained as ``phason strains,'' a special class of defects predicted to be the dominant type of imperfection formed during solidification.},
85 +        Author = {Steinhardt, Paul J.},
86 +        Copyright = {Copyright 1987 American Association for the Advancement of Science},
87 +        Date-Added = {2007-09-20 15:31:29 -0400},
88 +        Date-Modified = {2007-09-20 15:31:36 -0400},
89 +        Issn = {0036-8075},
90 +        Journal = {Science},
91 +        Jstor_Articletype = {Full Length Article},
92 +        Jstor_Date = {19871127},
93 +        Jstor_Formatteddate = {Nov. 27, 1987},
94 +        Local-Url = {file://localhost/Users/charles/Documents/Papers/steinhart_science.pdf},
95 +        Month = {nov},
96 +        Number = {4831},
97 +        Pages = {1242--1247},
98 +        Publisher = {American Association for the Advancement of Science},
99 +        Series = {3},
100 +        Title = {Icosahedral Solids: A New Phase of Matter?},
101 +        Url = {http://links.jstor.org/sici?sici=0036-8075%2819871127%293%3A238%3A4831%3C1242%3AISANPO%3E2.0.CO%3B2-I},
102 +        Volume = {238},
103 +        Year = {1987}}
104 +
105 + @article{Waal:1995lr,
106 +        Abstract = {It is proposed that the splitting of the second peak of the total static structure factor, S(k), of many metallic glasses is essentially the same feature as the indentation at k{$[$}sigma{$]$} = (9/2){$[$}pi{$]$} in the function (sin k {$[$}sigma{$]$} + {$[$}alpha{$]$}-1 sin k{$[$}alpha{$]$}{$[$}sigma{$]$}), caused by the coincidence of the fourth minimum of the second term with the third maximum of the first term when {$[$}alpha{$]$} {$[$}approximate{$]$} 5/3. Together with the strong-weak relation of the split peak components of S(k), this feature indicates the splitting to be direct evidence for face-sharing of regular tetrahedra ({$[$}alpha{$]$} = 2{$[$}square root{$]$}2/3) dominating the topological short range order; increasing the number of face-sharing tetrahedra in local structural units indeed increases the amount of peak splitting in S(k); a dense random packing of well defined identical structural units (DRPSU), with neighbouring units linked together by a shared icosahedron, is described in detail. The packing fraction in a homogeneous, isotropic 1078-atom model is 0.67, after static relaxation under a two-body Lennard-Jones potential.},
107 +        Author = {van de Waal, Benjamin W.},
108 +        Date-Added = {2007-09-20 13:17:52 -0400},
109 +        Date-Modified = {2007-09-20 13:18:07 -0400},
110 +        Journal = {Journal of Non-Crystalline Solids},
111 +        Local-Url = {file://localhost/Users/charles/Documents/Papers/sdarticle1.pdf},
112 +        Number = {1-2},
113 +        Pages = {118--128},
114 +        Title = {On the origin of second-peak splitting in the static structure factor of metallic glasses},
115 +        Ty = {JOUR},
116 +        Url = {http://www.sciencedirect.com/science/article/B6TXM-3YB50T0-Y/2/cfc3dd6cbf53b26af1daf9cddb6dd2e3},
117 +        Volume = {189},
118 +        Year = {1995}}
119 +
120 + @article{turnbull:411,
121 +        Author = {David Turnbull},
122 +        Date-Added = {2007-09-19 16:54:15 -0400},
123 +        Date-Modified = {2007-09-19 16:58:15 -0400},
124 +        Doi = {10.1063/1.1700435},
125 +        Journal = {The Journal of Chemical Physics},
126 +        Local-Url = {file://localhost/Users/charles/Documents/Papers/JChemPhys_20_411.pdf},
127 +        Number = {3},
128 +        Pages = {411-424},
129 +        Publisher = {AIP},
130 +        Title = {Kinetics of Solidification of Supercooled Liquid Mercury Droplets},
131 +        Url = {http://link.aip.org/link/?JCP/20/411/1},
132 +        Volume = {20},
133 +        Year = {1952}}
134 +
135 + @article{235821,
136 +        Address = {New York, NY, USA},
137 +        Author = {C. Bradford Barber and David P. Dobkin and Hannu Huhdanpaa},
138 +        Date-Added = {2007-09-18 19:11:42 -0400},
139 +        Date-Modified = {2007-09-18 19:11:50 -0400},
140 +        Doi = {http://doi.acm.org/10.1145/235815.235821},
141 +        Issn = {0098-3500},
142 +        Journal = {ACM Trans. Math. Softw.},
143 +        Local-Url = {file://localhost/Users/charles/Documents/Papers/p469-barber.pdf},
144 +        Number = {4},
145 +        Pages = {469--483},
146 +        Publisher = {ACM Press},
147 +        Title = {The quickhull algorithm for convex hulls},
148 +        Volume = {22},
149 +        Year = {1996}}
150 +
151 + @article{0031-9155-41-9-016,
152 +        Abstract = {Volume measurements are useful in many branches of science and medicine. They are usually accomplished by acquiring a sequence of cross sectional images through the object using an appropriate scanning modality, for example x-ray computed tomography (CT), magnetic resonance (MR) or ultrasound (US). In the cases of CT and MR, a dividing cubes algorithm can be used to describe the surface as a triangle mesh. However, such algorithms are not suitable for US data, especially when the image sequence is multiplanar (as it usually is). This problem may be overcome by manually tracing regions of interest (ROIs) on the registered multiplanar images and connecting the points into a trianglar mesh. In this paper we describe and evaluate a new discreet form of Gauss' theorem which enables the calculation of the volume of any enclosed surface described by a triangular mesh. The volume is calculated by summing the vector product of the centroid, area and normal of each surface triangle. The algorithm was tested on computer-generated objects, US-scanned balloons, livers and kidneys and CT-scanned clay rocks. The results, expressed as the mean percentage difference one standard deviation were , , and \% for balloons, livers, kidneys and rocks respectively. The results compare favourably with other volume estimation methods such as planimetry and tetrahedral decomposition.},
153 +        Author = {S W Hughes, T J D'Arcy, D J Maxwell, J E Saunders, C F Ruff, W S C Chiu and R J Sheppard},
154 +        Date-Added = {2007-09-18 18:49:49 -0400},
155 +        Date-Modified = {2007-09-18 18:49:55 -0400},
156 +        Journal = {Physics in Medicine and Biology},
157 +        Local-Url = {file://localhost/Users/charles/Documents/Papers/m60915.pdf},
158 +        Number = {9},
159 +        Pages = {1809-1821},
160 +        Title = {Application of a new discreet form of Gauss' theorem for measuring volume},
161 +        Url = {http://stacks.iop.org/0031-9155/41/1809},
162 +        Volume = {41},
163 +        Year = {1996}}
164 +
165 + @article{Balucani:1990fk,
166 +        Author = {Balucani, U. and Vallauri, R.},
167 +        Date-Added = {2007-09-18 11:47:47 -0400},
168 +        Date-Modified = {2007-09-18 11:48:01 -0400},
169 +        Journal = {Chemical Physics Letters},
170 +        Local-Url = {file://localhost/Users/charles/Documents/Papers/sdarticle0.pdf},
171 +        Number = {1},
172 +        Pages = {77--81},
173 +        Title = {Evolution of bond-angle distribution from liquid to glassy states},
174 +        Ty = {JOUR},
175 +        Url = {http://www.sciencedirect.com/science/article/B6TFN-44XDV0S-9H/2/fa1467fe68d6474b775de0f4cfd7f7ab},
176 +        Volume = {166},
177 +        Year = {1990}}
178 +
179 + @article{Sheng:2006lr,
180 +        Annote = {10.1038/nature04421},
181 +        Author = {Sheng, H. W. and Luo, W. K. and Alamgir, F. M. and Bai, J. M. and Ma, E.},
182 +        Date-Added = {2007-09-17 12:50:02 -0400},
183 +        Date-Modified = {2007-09-17 12:50:07 -0400},
184 +        Isbn = {0028-0836},
185 +        Journal = {Nature},
186 +        L3 = {http://www.nature.com/nature/journal/v439/n7075/suppinfo/nature04421_S1.html},
187 +        Local-Url = {file://localhost/Users/charles/Documents/Papers/nature04421.pdf},
188 +        M3 = {10.1038/nature04421},
189 +        Number = {7075},
190 +        Pages = {419--425},
191 +        Title = {Atomic packing and short-to-medium-range order in metallic glasses},
192 +        Ty = {JOUR},
193 +        Url = {http://dx.doi.org/10.1038/nature04421},
194 +        Volume = {439},
195 +        Year = {2006}}
196 +
197 + @article{19521106,
198 +        Author = {Frank, F. C.},
199 +        Copyright = {Copyright 1952 The Royal Society},
200 +        Date-Added = {2007-09-17 12:26:50 -0400},
201 +        Date-Modified = {2007-09-17 12:26:56 -0400},
202 +        Group = {A Discussion on Theory of Liquids},
203 +        Issn = {0080-4630},
204 +        Journal = {Proceedings of the Royal Society of London. Series A, Mathematical and Physical Sciences},
205 +        Jstor_Articletype = {Full Length Article},
206 +        Jstor_Date = {19521106},
207 +        Jstor_Formatteddate = {Nov. 6, 1952},
208 +        Local-Url = {file://localhost/Users/charles/Documents/Papers/frank_icos_liq.pdf},
209 +        Month = {nov},
210 +        Number = {1120},
211 +        Pages = {43--46},
212 +        Publisher = {The Royal Society},
213 +        Title = {Supercooling of Liquids},
214 +        Url = {http://links.jstor.org/sici?sici=0080-4630%2819521106%29215%3A1120%3C43%3ASOL%3E2.0.CO%3B2-9},
215 +        Volume = {215},
216 +        Year = {1952}}
217  
218 + @article{PhysRevLett.91.135505,
219 +        Author = {Di Cicco, Andrea and Trapananti, Angela and Faggioni, Silena and Filipponi, Adriano},
220 +        Date-Added = {2007-09-17 12:15:58 -0400},
221 +        Date-Modified = {2007-09-17 12:16:09 -0400},
222 +        Doi = {10.1103/PhysRevLett.91.135505},
223 +        Journal = {Phys. Rev. Lett.},
224 +        Local-Url = {file://localhost/Users/charles/Documents/Papers/e135505.pdf},
225 +        Month = {Sep},
226 +        Number = {13},
227 +        Numpages = {4},
228 +        Pages = {135505},
229 +        Publisher = {American Physical Society},
230 +        Title = {Is There Icosahedral Ordering in Liquid and Undercooled Metals?},
231 +        Volume = {91},
232 +        Year = {2003}}
233  
234 + @article{duijneveldt:4655,
235 +        Author = {J. S. van Duijneveldt and D. Frenkel},
236 +        Date-Added = {2007-09-13 16:50:13 -0400},
237 +        Date-Modified = {2007-09-13 16:50:22 -0400},
238 +        Doi = {10.1063/1.462802},
239 +        Journal = {The Journal of Chemical Physics},
240 +        Keywords = {COMPUTERIZED SIMULATION; FREE ENERGY; CRYSTALS; NUCLEATION; THERMAL BARRIERS; MONTE CARLO METHOD; SUPERCOOLED LIQUIDS; FCC LATTICES; BCC LATTICES; SIMULATION; HOMOGENEITY},
241 +        Local-Url = {file://localhost/Users/charles/Documents/Papers/JChemPhys_96_4655.pdf},
242 +        Number = {6},
243 +        Pages = {4655-4668},
244 +        Publisher = {AIP},
245 +        Title = {Computer simulation study of free energy barriers in crystal nucleation},
246 +        Url = {http://link.aip.org/link/?JCP/96/4655/1},
247 +        Volume = {96},
248 +        Year = {1992}}
249 +
250 + @article{Jiang:2005lr,
251 +        Author = {Hongjin Jiang and Kyoung-sik Moon and Wong, C. P.},
252 +        Date-Added = {2007-09-11 14:55:57 -0400},
253 +        Date-Modified = {2007-09-11 14:56:06 -0400},
254 +        Isbn = {1550-5723},
255 +        Journal = {Advanced Packaging Materials: Processes, Properties and Interfaces, 2005. Proceedings. International Symposium on},
256 +        Journal1 = {Advanced Packaging Materials: Processes, Properties and Interfaces, 2005. Proceedings. International Symposium on},
257 +        Keywords = {adhesives; conducting polymers; copper alloys; filled polymers; filler metals; integrated circuit interconnections; materials preparation; nanoparticles; powder technology; powders; silver alloys; Ag-Cu alloy nanoparticle synthesis; AgCu; TEM observation; UV absorption; conductive filler; electrically conductive adhesive; lead-free interconnect material; mixed alloy structure; polyol process; silver-copper alloy},
258 +        Local-Url = {file://localhost/Users/charles/Documents/Papers/01432072.pdf},
259 +        Pages = {173--177},
260 +        Title = {Synthesis of Ag-Cu alloy nanoparticles for lead-free interconnect materials},
261 +        Title1 = {Advanced Packaging Materials: Processes, Properties and Interfaces, 2005. Proceedings. International Symposium on},
262 +        Ty = {CONF},
263 +        Year = {2005}}
264  
265   @unpublished{hartlandPrv2007,
266          Author = {G. V. Hartland},
# Line 1907 | Line 2163
2163                  <key>group name</key>
2164                  <string>Icosahedral Order</string>
2165                  <key>keys</key>
2166 <                <string>ganesh-2006-</string>
2166 >                <string>PhysRevLett.60.2295,hsu:4974,HOARE:1976fk,19871127,Balucani:1990fk,ganesh-2006-,PhysRevLett.53.1951,19521106,Waal:1995lr,Steinhardt:1983mo,PhysRevLett.56.1168,PhysRevLett.91.135505,turnbull:411,luo:131927</string>
2167          </dict>
2168          <dict>
2169                  <key>group name</key>
# Line 1935 | Line 2191
2191          </dict>
2192          <dict>
2193                  <key>group name</key>
2194 +                <string>NPT Langevin</string>
2195 +                <key>keys</key>
2196 +                <string>calvo:125414,Kohanoff:2005,0953-8984-18-39-037,0031-9155-41-9-016,Buscaglia:1997fk,0953-8984-14-26-101,Baltazar:2006lr</string>
2197 +        </dict>
2198 +        <dict>
2199 +                <key>group name</key>
2200                  <string>Pair Analysis</string>
2201                  <key>keys</key>
2202                  <string>Miracle:2006qy,Iwamatsu:2007lr,HoneycuttJ.Dana_j100303a014,PhysRevLett.60.2295</string>

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