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add shearGrad plot, fix some eqn.'s

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1 %% This BibTeX bibliography file was created using BibDesk.
2 %% http://bibdesk.sourceforge.net/
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5 %% Created for Shenyu Kuang at 2010-03-09 13:08:58 -0500
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11
12 @article{ISI:000273472300004,
13 Abstract = {{The reverse nonequilibrium molecular dynamics (RNEMD) method calculates
14 the shear viscosity of a fluid by imposing a nonphysical exchange of
15 momentum and measuring the resulting shear velocity gradient. In this
16 study we investigate the range of momentum flux values over which RNEMD
17 yields usable (linear) velocity gradients. We find that nonlinear
18 velocity profiles result primarily from gradients in fluid temperature
19 and density. The temperature gradient results from conversion of heat
20 into bulk kinetic energy, which is transformed back into heat elsewhere
21 via viscous heating. An expression is derived to predict the
22 temperature profile resulting from a specified momentum flux for a
23 given fluid and simulation cell. Although primarily bounded above, we
24 also describe milder low-flux limitations. RNEMD results for a
25 Lennard-Jones fluid agree with equilibrium molecular dynamics and
26 conventional nonequilibrium molecular dynamics calculations at low
27 shear, but RNEMD underpredicts viscosity relative to conventional NEMD
28 at high shear.}},
29 Address = {{CIRCULATION \& FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1, MELVILLE, NY 11747-4501 USA}},
30 Affiliation = {{Tenney, CM (Reprint Author), Univ Notre Dame, Dept Chem \& Biomol Engn, 182 Fitzpatrick Hall, Notre Dame, IN 46556 USA. {[}Tenney, Craig M.; Maginn, Edward J.] Univ Notre Dame, Dept Chem \& Biomol Engn, Notre Dame, IN 46556 USA.}},
31 Article-Number = {{014103}},
32 Author = {Tenney, Craig M. and Maginn, Edward J.},
33 Author-Email = {{ed@nd.edu}},
34 Date-Added = {2010-03-09 13:08:41 -0500},
35 Date-Modified = {2010-03-09 13:08:41 -0500},
36 Doc-Delivery-Number = {{542DQ}},
37 Doi = {{10.1063/1.3276454}},
38 Funding-Acknowledgement = {{U.S. Department of Energy {[}DE-FG36-08G088020]}},
39 Funding-Text = {{Support for this work was provided by the U.S. Department of Energy (Grant No. DE-FG36-08G088020)}},
40 Issn = {{0021-9606}},
41 Journal = {{JOURNAL OF CHEMICAL PHYSICS}},
42 Journal-Iso = {{J. Chem. Phys.}},
43 Keywords = {{Lennard-Jones potential; molecular dynamics method; Navier-Stokes equations; viscosity}},
44 Keywords-Plus = {{CURRENT AUTOCORRELATION-FUNCTION; IONIC LIQUID; SIMULATIONS; TEMPERATURE}},
45 Language = {{English}},
46 Month = {{JAN 7}},
47 Number = {{1}},
48 Number-Of-Cited-References = {{20}},
49 Publisher = {{AMER INST PHYSICS}},
50 Subject-Category = {{Physics, Atomic, Molecular \& Chemical}},
51 Times-Cited = {{0}},
52 Title = {{Limitations and recommendations for the calculation of shear viscosity using reverse nonequilibrium molecular dynamics}},
53 Type = {{Article}},
54 Unique-Id = {{ISI:000273472300004}},
55 Volume = {{132}},
56 Year = {{2010}},
57 Bdsk-Url-1 = {http://dx.doi.org/10.1063/1.3276454%7D}}
58
59 @article{ISI:A1992HX37800010,
60 Abstract = {{The regrowth velocity of a crystal from a melt depends on contributions
61 from the thermal conductivity, heat gradient, and latent heat. The
62 relative contributions of these terms to the regrowth velocity of the
63 pure metals copper and gold during liquid-phase epitaxy are evaluated.
64 These results are used to explain how results from previous
65 nonequilibrium molecular-dynamics simulations using classical
66 potentials are able to predict regrowth velocities that are close to
67 the experimental values. Results from equilibrium molecular dynamics
68 showing the nature of the solid-vapor interface of an
69 embedded-atom-method-modeled Cu57Ni43 alloy at a temperature
70 corresponding to 62\% of the melting point are presented. The regrowth
71 of this alloy following a simulation of a laser-processing experiment
72 is also given, with use of nonequilibrium molecular-dynamics
73 techniques. The thermal conductivity and temperature gradient in the
74 simulation of the alloy are compared to those for the pure metals.}},
75 Address = {{ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA}},
76 Affiliation = {{CORNELL UNIV,SCH CHEM ENGN,ITHACA,NY 14853.}},
77 Author = {RICHARDSON, CF and CLANCY, P},
78 Date-Added = {2010-01-12 16:17:33 -0500},
79 Date-Modified = {2010-01-12 16:17:33 -0500},
80 Doc-Delivery-Number = {{HX378}},
81 Issn = {{0163-1829}},
82 Journal = {{PHYSICAL REVIEW B}},
83 Journal-Iso = {{Phys. Rev. B}},
84 Keywords-Plus = {{SURFACE SEGREGATION; MOLECULAR-DYNAMICS; TRANSITION-METALS; SOLIDIFICATION; GROWTH; CU; NI}},
85 Language = {{English}},
86 Month = {{JUN 1}},
87 Number = {{21}},
88 Number-Of-Cited-References = {{24}},
89 Pages = {{12260-12268}},
90 Publisher = {{AMERICAN PHYSICAL SOC}},
91 Subject-Category = {{Physics, Condensed Matter}},
92 Times-Cited = {{11}},
93 Title = {{CONTRIBUTION OF THERMAL-CONDUCTIVITY TO THE CRYSTAL-REGROWTH VELOCITY OF EMBEDDED-ATOM-METHOD-MODELED METALS AND METAL-ALLOYS}},
94 Type = {{Article}},
95 Unique-Id = {{ISI:A1992HX37800010}},
96 Volume = {{45}},
97 Year = {{1992}}}
98
99 @article{ISI:000090151400044,
100 Abstract = {{We have applied a new nonequilibrium molecular dynamics (NEMD) method
101 {[}F. Muller-Plathe, J. Chem. Phys. 106, 6082 (1997)] previously
102 applied to monatomic Lennard-Jones fluids in the determination of the
103 thermal conductivity of molecular fluids. The method was modified in
104 order to be applicable to systems with holonomic constraints. Because
105 the method involves imposing a known heat flux it is particularly
106 attractive for systems involving long-range and many-body interactions
107 where calculation of the microscopic heat flux is difficult. The
108 predicted thermal conductivities of liquid n-butane and water using the
109 imposed-flux NEMD method were found to be in a good agreement with
110 previous simulations and experiment. (C) 2000 American Institute of
111 Physics. {[}S0021-9606(00)50841-1].}},
112 Address = {{2 HUNTINGTON QUADRANGLE, STE 1NO1, MELVILLE, NY 11747-4501 USA}},
113 Affiliation = {{Bedrov, D (Reprint Author), Univ Utah, Dept Chem \& Fuels Engn, 122 S Cent Campus Dr,Rm 304, Salt Lake City, UT 84112 USA. Univ Utah, Dept Chem \& Fuels Engn, Salt Lake City, UT 84112 USA. Univ Utah, Dept Mat Sci \& Engn, Salt Lake City, UT 84112 USA.}},
114 Author = {Bedrov, D and Smith, GD},
115 Date-Added = {2009-11-05 18:21:18 -0500},
116 Date-Modified = {2009-11-05 18:21:18 -0500},
117 Doc-Delivery-Number = {{369BF}},
118 Issn = {{0021-9606}},
119 Journal = {{JOURNAL OF CHEMICAL PHYSICS}},
120 Journal-Iso = {{J. Chem. Phys.}},
121 Keywords-Plus = {{EFFECTIVE PAIR POTENTIALS; TRANSPORT-PROPERTIES; CANONICAL ENSEMBLE; NORMAL-BUTANE; ALGORITHMS; SHAKE; WATER}},
122 Language = {{English}},
123 Month = {{NOV 8}},
124 Number = {{18}},
125 Number-Of-Cited-References = {{26}},
126 Pages = {{8080-8084}},
127 Publisher = {{AMER INST PHYSICS}},
128 Subject-Category = {{Physics, Atomic, Molecular \& Chemical}},
129 Times-Cited = {{23}},
130 Title = {{Thermal conductivity of molecular fluids from molecular dynamics simulations: Application of a new imposed-flux method}},
131 Type = {{Article}},
132 Unique-Id = {{ISI:000090151400044}},
133 Volume = {{113}},
134 Year = {{2000}}}
135
136 @article{ISI:000231042800044,
137 Abstract = {{The reverse nonequilibrium molecular dynamics method for thermal
138 conductivities is adapted to the investigation of molecular fluids. The
139 method generates a heat flux through the system by suitably exchanging
140 velocities of particles located in different regions. From the
141 resulting temperature gradient, the thermal conductivity is then
142 calculated. Different variants of the algorithm and their combinations
143 with other system parameters are tested: exchange of atomic velocities
144 versus exchange of molecular center-of-mass velocities, different
145 exchange frequencies, molecular models with bond constraints versus
146 models with flexible bonds, united-atom versus all-atom models, and
147 presence versus absence of a thermostat. To help establish the range of
148 applicability, the algorithm is tested on different models of benzene,
149 cyclohexane, water, and n-hexane. We find that the algorithm is robust
150 and that the calculated thermal conductivities are insensitive to
151 variations in its control parameters. The force field, in contrast, has
152 a major influence on the value of the thermal conductivity. While
153 calculated and experimental thermal conductivities fall into the same
154 order of magnitude, in most cases the calculated values are
155 systematically larger. United-atom force fields seem to do better than
156 all-atom force fields, possibly because they remove high-frequency
157 degrees of freedom from the simulation, which, in nature, are
158 quantum-mechanical oscillators in their ground state and do not
159 contribute to heat conduction.}},
160 Address = {{1155 16TH ST, NW, WASHINGTON, DC 20036 USA}},
161 Affiliation = {{Zhang, MM (Reprint Author), Int Univ Bremen, POB 750 561, D-28725 Bremen, Germany. Int Univ Bremen, D-28725 Bremen, Germany. Banco Cent Brasil, Desup, Diesp, BR-01310922 Sao Paulo, Brazil.}},
162 Author = {Zhang, MM and Lussetti, E and de Souza, LES and Muller-Plathe, F},
163 Date-Added = {2009-11-05 18:17:33 -0500},
164 Date-Modified = {2009-11-05 18:17:33 -0500},
165 Doc-Delivery-Number = {{952YQ}},
166 Doi = {{10.1021/jp0512255}},
167 Issn = {{1520-6106}},
168 Journal = {{JOURNAL OF PHYSICAL CHEMISTRY B}},
169 Journal-Iso = {{J. Phys. Chem. B}},
170 Keywords-Plus = {{LENNARD-JONES LIQUIDS; TRANSPORT-COEFFICIENTS; SWOLLEN POLYMERS; SHEAR VISCOSITY; MODEL SYSTEMS; SIMULATION; BENZENE; FLUIDS; POTENTIALS; DIFFUSION}},
171 Language = {{English}},
172 Month = {{AUG 11}},
173 Number = {{31}},
174 Number-Of-Cited-References = {{42}},
175 Pages = {{15060-15067}},
176 Publisher = {{AMER CHEMICAL SOC}},
177 Subject-Category = {{Chemistry, Physical}},
178 Times-Cited = {{17}},
179 Title = {{Thermal conductivities of molecular liquids by reverse nonequilibrium molecular dynamics}},
180 Type = {{Article}},
181 Unique-Id = {{ISI:000231042800044}},
182 Volume = {{109}},
183 Year = {{2005}},
184 Bdsk-Url-1 = {http://dx.doi.org/10.1021/jp0512255%7D}}
185
186 @article{ISI:A1997YC32200056,
187 Abstract = {{Equilibrium molecular dynamics simulations have been carried out in the
188 microcanonical ensemble at 300 and 255 K on the extended simple point
189 charge (SPC/E) model of water {[}Berendsen et al., J. Phys. Chem. 91,
190 6269 (1987)]. In addition to a number of static and dynamic properties,
191 thermal conductivity lambda has been calculated via Green-Kubo
192 integration of the heat current time correlation functions (CF's) in
193 the atomic and molecular formalism, at wave number k=0. The calculated
194 values (0.67 +/- 0.04 W/mK at 300 K and 0.52 +/- 0.03 W/mK at 255 K)
195 are in good agreement with the experimental data (0.61 W/mK at 300 K
196 and 0.49 W/mK at 255 K). A negative long-time tail of the heat current
197 CF, more apparent at 255 K, is responsible for the anomalous decrease
198 of lambda with temperature. An analysis of the dynamical modes
199 contributing to lambda has shown that its value is due to two
200 low-frequency exponential-like modes, a faster collisional mode, with
201 positive contribution, and a slower one, which determines the negative
202 long-time tail. A comparison of the molecular and atomic spectra of the
203 heat current CF has suggested that higher-frequency modes should not
204 contribute to lambda in this temperature range. Generalized thermal
205 diffusivity D-T(k) decreases as a function of k, after an initial minor
206 increase at k = k(min). The k dependence of the generalized
207 thermodynamic properties has been calculated in the atomic and
208 molecular formalisms. The observed differences have been traced back to
209 intramolecular or intermolecular rotational effects and related to the
210 partial structure functions. Finally, from the results we calculated it
211 appears that the SPC/E model gives results in better agreement with
212 experimental data than the transferable intermolecular potential with
213 four points TIP4P water model {[}Jorgensen et al., J. Chem. Phys. 79,
214 926 (1983)], with a larger improvement for, e.g., diffusion,
215 viscosities, and dielectric properties and a smaller one for thermal
216 conductivity. The SPC/E model shares, to a smaller extent, the
217 insufficient slowing down of dynamics at low temperature already found
218 for the TIP4P water model.}},
219 Address = {{ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA}},
220 Affiliation = {{UNIV PISA,DIPARTIMENTO CHIM \& CHIM IND,I-56126 PISA,ITALY. CNR,IST FIS ATOM \& MOL,I-56127 PISA,ITALY.}},
221 Author = {Bertolini, D and Tani, A},
222 Date-Added = {2009-10-30 15:41:21 -0400},
223 Date-Modified = {2009-10-30 15:41:21 -0400},
224 Doc-Delivery-Number = {{YC322}},
225 Issn = {{1063-651X}},
226 Journal = {{PHYSICAL REVIEW E}},
227 Journal-Iso = {{Phys. Rev. E}},
228 Keywords-Plus = {{TIME-CORRELATION-FUNCTIONS; LENNARD-JONES LIQUID; TRANSPORT-PROPERTIES; SUPERCOOLED WATER; DENSITY; SIMULATIONS; RELAXATION; VELOCITY; ELECTRON; FLUIDS}},
229 Language = {{English}},
230 Month = {{OCT}},
231 Number = {{4}},
232 Number-Of-Cited-References = {{35}},
233 Pages = {{4135-4151}},
234 Publisher = {{AMERICAN PHYSICAL SOC}},
235 Subject-Category = {{Physics, Fluids \& Plasmas; Physics, Mathematical}},
236 Times-Cited = {{18}},
237 Title = {{Thermal conductivity of water: Molecular dynamics and generalized hydrodynamics results}},
238 Type = {{Article}},
239 Unique-Id = {{ISI:A1997YC32200056}},
240 Volume = {{56}},
241 Year = {{1997}}}
242
243 @article{Meineke:2005gd,
244 Abstract = {OOPSE is a new molecular dynamics simulation program that is capable of efficiently integrating equations of motion for atom types with orientational degrees of freedom (e.g. "sticky" atoms and point dipoles). Transition metals can also be simulated using the embedded atom method (EAM) potential included in the code. Parallel simulations are carried out using the force-based decomposition method. Simulations are specified using a very simple C-based meta-data language. A number of advanced integrators are included, and the basic integrator for orientational dynamics provides substantial improvements over older quaternion-based schemes. (C) 2004 Wiley Periodicals, Inc.},
245 Address = {111 RIVER ST, HOBOKEN, NJ 07030 USA},
246 Author = {Meineke, MA and Vardeman, CF and Lin, T and Fennell, CJ and Gezelter, JD},
247 Date-Added = {2009-10-01 18:43:03 -0400},
248 Date-Modified = {2009-10-01 18:43:03 -0400},
249 Doi = {DOI 10.1002/jcc.20161},
250 Isi = {000226558200006},
251 Isi-Recid = {142688207},
252 Isi-Ref-Recids = {67885400 50663994 64190493 93668415 46699855 89992422 57614458 49016001 61447131 111114169 68770425 52728075 102422498 66381878 32391149 134477335 53221357 9929643 59492217 69681001 99223832 142688208 94600872 91658572 54857943 117365867 69323123 49588888 109970172 101670714 142688209 121603296 94652379 96449138 99938010 112825758 114905670 86802042 121339042 104794914 82674909 72096791 93668384 90513335 142688210 23060767 63731466 109033408 76303716 31384453 97861662 71842426 130707771 125809946 66381889 99676497},
253 Journal = {Journal of Computational Chemistry},
254 Keywords = {OOPSE; molecular dynamics},
255 Month = feb,
256 Number = {3},
257 Pages = {252-271},
258 Publisher = {JOHN WILEY \& SONS INC},
259 Times-Cited = {9},
260 Title = {OOPSE: An object-oriented parallel simulation engine for molecular dynamics},
261 Volume = {26},
262 Year = {2005},
263 Bdsk-Url-1 = {http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=Alerting&SrcApp=Alerting&DestApp=WOS&DestLinkType=FullRecord;KeyUT=000226558200006}}
264
265 @article{ISI:000080382700030,
266 Abstract = {{A nonequilibrium method for calculating the shear viscosity is
267 presented. It reverses the cause-and-effect picture customarily used in
268 nonequilibrium molecular dynamics: the effect, the momentum flux or
269 stress, is imposed, whereas the cause, the velocity gradient or shear
270 rate, is obtained from the simulation. It differs from other
271 Norton-ensemble methods by the way in which the steady-state momentum
272 flux is maintained. This method involves a simple exchange of particle
273 momenta, which is easy to implement. Moreover, it can be made to
274 conserve the total energy as well as the total linear momentum, so no
275 coupling to an external temperature bath is needed. The resulting raw
276 data, the velocity profile, is a robust and rapidly converging
277 property. The method is tested on the Lennard-Jones fluid near its
278 triple point. It yields a viscosity of 3.2-3.3, in Lennard-Jones
279 reduced units, in agreement with literature results.
280 {[}S1063-651X(99)03105-0].}},
281 Address = {{ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA}},
282 Affiliation = {{Muller-Plathe, F (Reprint Author), Max Planck Inst Polymerforsch, Ackermannweg 10, D-55128 Mainz, Germany. Max Planck Inst Polymerforsch, D-55128 Mainz, Germany.}},
283 Author = {Muller-Plathe, F},
284 Date-Added = {2009-10-01 14:07:30 -0400},
285 Date-Modified = {2009-10-01 14:07:30 -0400},
286 Doc-Delivery-Number = {{197TX}},
287 Issn = {{1063-651X}},
288 Journal = {{PHYSICAL REVIEW E}},
289 Journal-Iso = {{Phys. Rev. E}},
290 Language = {{English}},
291 Month = {{MAY}},
292 Number = {{5, Part A}},
293 Number-Of-Cited-References = {{17}},
294 Pages = {{4894-4898}},
295 Publisher = {{AMERICAN PHYSICAL SOC}},
296 Subject-Category = {{Physics, Fluids \& Plasmas; Physics, Mathematical}},
297 Times-Cited = {{57}},
298 Title = {{Reversing the perturbation in nonequilibrium molecular dynamics: An easy way to calculate the shear viscosity of fluids}},
299 Type = {{Article}},
300 Unique-Id = {{ISI:000080382700030}},
301 Volume = {{59}},
302 Year = {{1999}}}
303
304 @article{ISI:000246190100032,
305 Abstract = {{Atomistic simulations are conducted to examine the dependence of the
306 viscosity of 1-ethyl-3-methylimidazolium
307 bis(trifluoromethanesulfonyl)imide on temperature and water content. A
308 nonequilibrium molecular dynamics procedure is utilized along with an
309 established fixed charge force field. It is found that the simulations
310 quantitatively capture the temperature dependence of the viscosity as
311 well as the drop in viscosity that occurs with increasing water
312 content. Using mixture viscosity models, we show that the relative drop
313 in viscosity with water content is actually less than that that would
314 be predicted for an ideal system. This finding is at odds with the
315 popular notion that small amounts of water cause an unusually large
316 drop in the viscosity of ionic liquids. The simulations suggest that,
317 due to preferential association of water with anions and the formation
318 of water clusters, the excess molar volume is negative. This means that
319 dissolved water is actually less effective at lowering the viscosity of
320 these mixtures when compared to a solute obeying ideal mixing behavior.
321 The use of a nonequilibrium simulation technique enables diffusive
322 behavior to be observed on the time scale of the simulations, and
323 standard equilibrium molecular dynamics resulted in sub-diffusive
324 behavior even over 2 ns of simulation time.}},
325 Address = {{1155 16TH ST, NW, WASHINGTON, DC 20036 USA}},
326 Affiliation = {{Maginn, EJ (Reprint Author), Univ Notre Dame, Dept Chem \& Biomol Engn, 182 Fitzpatrick Hall, Notre Dame, IN 46556 USA. Univ Notre Dame, Dept Chem \& Biomol Engn, Notre Dame, IN 46556 USA.}},
327 Author = {Kelkar, Manish S. and Maginn, Edward J.},
328 Author-Email = {{ed@nd.edu}},
329 Date-Added = {2009-09-29 17:07:17 -0400},
330 Date-Modified = {2009-09-29 17:07:17 -0400},
331 Doc-Delivery-Number = {{163VA}},
332 Doi = {{10.1021/jp0686893}},
333 Issn = {{1520-6106}},
334 Journal = {{JOURNAL OF PHYSICAL CHEMISTRY B}},
335 Journal-Iso = {{J. Phys. Chem. B}},
336 Keywords-Plus = {{MOLECULAR-DYNAMICS SIMULATION; MOMENTUM IMPULSE RELAXATION; FORCE-FIELD; TRANSPORT-PROPERTIES; PHYSICAL-PROPERTIES; SIMPLE FLUID; CHLORIDE; MODEL; SALTS; ARCHITECTURE}},
337 Language = {{English}},
338 Month = {{MAY 10}},
339 Number = {{18}},
340 Number-Of-Cited-References = {{57}},
341 Pages = {{4867-4876}},
342 Publisher = {{AMER CHEMICAL SOC}},
343 Subject-Category = {{Chemistry, Physical}},
344 Times-Cited = {{35}},
345 Title = {{Effect of temperature and water content on the shear viscosity of the ionic liquid 1-ethyl-3-methylimidazolium bis(trifluoromethanesulfonyl)imide as studied by atomistic simulations}},
346 Type = {{Article}},
347 Unique-Id = {{ISI:000246190100032}},
348 Volume = {{111}},
349 Year = {{2007}},
350 Bdsk-Url-1 = {http://dx.doi.org/10.1021/jp0686893%7D}}
351
352 @article{MullerPlathe:1997xw,
353 Abstract = {A nonequilibrium molecular dynamics method for calculating the thermal conductivity is presented. It reverses the usual cause and effect picture. The ''effect,'' the heat flux, is imposed on the system and the ''cause,'' the temperature gradient is obtained from the simulation. Besides being very simple to implement, the scheme offers several advantages such as compatibility with periodic boundary conditions, conservation of total energy and total linear momentum, and the sampling of a rapidly converging quantity (temperature gradient) rather than a slowly converging one (heat flux). The scheme is tested on the Lennard-Jones fluid. (C) 1997 American Institute of Physics.},
354 Address = {WOODBURY},
355 Author = {MullerPlathe, F.},
356 Cited-Reference-Count = {13},
357 Date = {APR 8},
358 Date-Added = {2009-09-21 16:51:21 -0400},
359 Date-Modified = {2009-09-21 16:51:21 -0400},
360 Document-Type = {Article},
361 Isi = {ISI:A1997WR62000032},
362 Isi-Document-Delivery-Number = {WR620},
363 Iso-Source-Abbreviation = {J. Chem. Phys.},
364 Issn = {0021-9606},
365 Journal = {JOURNAL OF CHEMICAL PHYSICS},
366 Language = {English},
367 Month = {Apr},
368 Number = {14},
369 Page-Count = {4},
370 Pages = {6082--6085},
371 Publication-Type = {J},
372 Publisher = {AMER INST PHYSICS},
373 Publisher-Address = {CIRCULATION FULFILLMENT DIV, 500 SUNNYSIDE BLVD, WOODBURY, NY 11797-2999},
374 Reprint-Address = {MullerPlathe, F, MAX PLANCK INST POLYMER RES, D-55128 MAINZ, GERMANY.},
375 Source = {J CHEM PHYS},
376 Subject-Category = {Physics, Atomic, Molecular & Chemical},
377 Times-Cited = {106},
378 Title = {A simple nonequilibrium molecular dynamics method for calculating the thermal conductivity},
379 Volume = {106},
380 Year = {1997}}
381
382 @article{Muller-Plathe:1999ek,
383 Abstract = {A novel non-equilibrium method for calculating transport coefficients is presented. It reverses the experimental cause-and-effect picture, e.g. for the calculation of viscosities: the effect, the momentum flux or stress, is imposed, whereas the cause, the velocity gradient or shear rates, is obtained from the simulation. It differs from other Norton-ensemble methods by the way, in which the steady-state fluxes are maintained. This method involves a simple exchange of particle momenta, which is easy to implement and to analyse. Moreover, it can be made to conserve the total energy as well as the total linear momentum, so no thermostatting is needed. The resulting raw data are robust and rapidly converging. The method is tested on the calculation of the shear viscosity, the thermal conductivity and the Soret coefficient (thermal diffusion) for the Lennard-Jones (LJ) fluid near its triple point. Possible applications to other transport coefficients and more complicated systems are discussed. (C) 1999 Elsevier Science Ltd. All rights reserved.},
384 Address = {THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND},
385 Author = {Muller-Plathe, F and Reith, D},
386 Date-Added = {2009-09-21 16:47:07 -0400},
387 Date-Modified = {2009-09-21 16:47:07 -0400},
388 Isi = {000082266500004},
389 Isi-Recid = {111564960},
390 Isi-Ref-Recids = {64516210 89773595 53816621 60134000 94875498 60964023 90228608 85968509 86405859 63979644 108048497 87560156 577165 103281654 111564961 83735333 99953572 88476740 110174781 111564963 6599000 75892253},
391 Journal = {Computational and Theoretical Polymer Science},
392 Keywords = {viscosity; Ludwig-Soret effect; thermal conductivity; Onsager coefficents; non-equilibrium molecular dynamics},
393 Number = {3-4},
394 Pages = {203-209},
395 Publisher = {ELSEVIER SCI LTD},
396 Times-Cited = {15},
397 Title = {Cause and effect reversed in non-equilibrium molecular dynamics: an easy route to transport coefficients},
398 Volume = {9},
399 Year = {1999},
400 Bdsk-Url-1 = {http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=Alerting&SrcApp=Alerting&DestApp=WOS&DestLinkType=FullRecord;KeyUT=000082266500004}}
401
402 @article{Viscardy:2007lq,
403 Abstract = {The thermal conductivity is calculated with the Helfand-moment method in the Lennard-Jones fluid near the triple point. The Helfand moment of thermal conductivity is here derived for molecular dynamics with periodic boundary conditions. Thermal conductivity is given by a generalized Einstein relation with this Helfand moment. The authors compute thermal conductivity by this new method and compare it with their own values obtained by the standard Green-Kubo method. The agreement is excellent. (C) 2007 American Institute of Physics.},
404 Address = {CIRCULATION \& FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1, MELVILLE, NY 11747-4501 USA},
405 Author = {Viscardy, S. and Servantie, J. and Gaspard, P.},
406 Date-Added = {2009-09-21 16:37:20 -0400},
407 Date-Modified = {2009-09-21 16:37:20 -0400},
408 Doi = {DOI 10.1063/1.2724821},
409 Isi = {000246453900035},
410 Isi-Recid = {156192451},
411 Isi-Ref-Recids = {18794442 84473620 156192452 41891249 90040203 110174972 59859940 47256160 105716249 91804339 93329429 95967319 6199670 1785176 105872066 6325196 65361295 71941152 4307928 23120502 54053395 149068110 4811016 99953572 59859908 132156782 156192449},
412 Journal = {Journal of Chemical Physics},
413 Month = may,
414 Number = {18},
415 Publisher = {AMER INST PHYSICS},
416 Times-Cited = {3},
417 Title = {Transport and Helfand moments in the Lennard-Jones fluid. II. Thermal conductivity},
418 Volume = {126},
419 Year = {2007},
420 Bdsk-Url-1 = {http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=Alerting&SrcApp=Alerting&DestApp=WOS&DestLinkType=FullRecord;KeyUT=000246453900035}}
421
422 @article{Viscardy:2007bh,
423 Abstract = {The authors propose a new method, the Helfand-moment method, to compute the shear viscosity by equilibrium molecular dynamics in periodic systems. In this method, the shear viscosity is written as an Einstein-type relation in terms of the variance of the so-called Helfand moment. This quantity is modified in order to satisfy systems with periodic boundary conditions usually considered in molecular dynamics. They calculate the shear viscosity in the Lennard-Jones fluid near the triple point thanks to this new technique. They show that the results of the Helfand-moment method are in excellent agreement with the results of the standard Green-Kubo method. (C) 2007 American Institute of Physics.},
424 Address = {CIRCULATION \& FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1, MELVILLE, NY 11747-4501 USA},
425 Author = {Viscardy, S. and Servantie, J. and Gaspard, P.},
426 Date-Added = {2009-09-21 16:37:19 -0400},
427 Date-Modified = {2009-09-21 16:37:19 -0400},
428 Doi = {DOI 10.1063/1.2724820},
429 Isi = {000246453900034},
430 Isi-Recid = {156192449},
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432 Journal = {Journal of Chemical Physics},
433 Month = may,
434 Number = {18},
435 Publisher = {AMER INST PHYSICS},
436 Times-Cited = {1},
437 Title = {Transport and Helfand moments in the Lennard-Jones fluid. I. Shear viscosity},
438 Volume = {126},
439 Year = {2007},
440 Bdsk-Url-1 = {http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=Alerting&SrcApp=Alerting&DestApp=WOS&DestLinkType=FullRecord;KeyUT=000246453900034}}