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11
12 @article{ISI:000207079300006,
13 Abstract = {{Non-equilibrium Molecular Dynamics Simulation methods have been used to
14 study the ability of Embedded Atom Method models of the metals copper
15 and gold to reproduce the equilibrium and non-equilibrium behavior of
16 metals at a stationary and at a moving solid/liquid interface. The
17 equilibrium solid/vapor interface was shown to display a simple
18 termination of the bulk until the temperature of the solid reaches
19 approximate to 90\% of the bulk melting point. At and above such
20 temperatures the systems exhibit a surface disodering known as surface
21 melting. Non-equilibrium simulations emulating the action of a
22 picosecond laser on the metal were performed to determine the regrowth
23 velocity. For copper, the action of a 20 ps laser with an absorbed
24 energy of 2-5 mJ/cm(2) produced a regrowth velocity of 83-100 m/s, in
25 reasonable agreement with the value obtained by experiment (>60 m/s).
26 For gold, similar conditions produced a slower regrowth velocity of 63
27 m/s at an absorbed energy of 5 mJ/cm(2). This is almost a factor of two
28 too low in comparison to experiment (>100 m/s). The regrowth velocities
29 of the metals seems unexpectedly close to experiment considering that
30 the free-electron contribution is ignored in the Embeeded Atom Method
31 models used.}},
32 Address = {{4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND}},
33 Affiliation = {{Clancy, P (Reprint Author), Cornell Univ, Sch Chem Engn, Ithaca, NY 14853 USA. {[}Richardson, Clifton F.; Clancy, Paulette] Cornell Univ, Sch Chem Engn, Ithaca, NY 14853 USA.}},
34 Author = {Richardson, Clifton F. and Clancy, Paulette},
35 Date-Added = {2010-04-07 11:24:36 -0400},
36 Date-Modified = {2010-04-07 11:24:36 -0400},
37 Doc-Delivery-Number = {{V04SY}},
38 Issn = {{0892-7022}},
39 Journal = {{MOLECULAR SIMULATION}},
40 Journal-Iso = {{Mol. Simul.}},
41 Keywords = {{Non-equilibrium computer simulation; molecular dynamics; crystal growth; Embedded Atom Method models of metals}},
42 Language = {{English}},
43 Number = {{5-6}},
44 Number-Of-Cited-References = {{36}},
45 Pages = {{335-355}},
46 Publisher = {{TAYLOR \& FRANCIS LTD}},
47 Subject-Category = {{Chemistry, Physical; Physics, Atomic, Molecular \& Chemical}},
48 Times-Cited = {{7}},
49 Title = {{PICOSECOND LASER PROCESSING OF COPPER AND GOLD: A COMPUTER SIMULATION STUDY}},
50 Type = {{Article}},
51 Unique-Id = {{ISI:000207079300006}},
52 Volume = {{7}},
53 Year = {{1991}}}
54
55 @article{ISI:000167766600035,
56 Abstract = {{Molecular dynamics simulations are used to investigate the separation
57 of water films adjacent to a hot metal surface. The simulations clearly
58 show that the water layers nearest the surface overheat and undergo
59 explosive boiling. For thick films, the expansion of the vaporized
60 molecules near the surface forces the outer water layers to move away
61 from the surface. These results are of interest for mass spectrometry
62 of biological molecules, steam cleaning of surfaces, and medical
63 procedures.}},
64 Address = {{1155 16TH ST, NW, WASHINGTON, DC 20036 USA}},
65 Affiliation = {{Garrison, BJ (Reprint Author), Penn State Univ, Dept Chem, University Pk, PA 16802 USA. Penn State Univ, Dept Chem, University Pk, PA 16802 USA. Penn State Univ, Inst Mat Res, University Pk, PA 16802 USA. Univ Virginia, Dept Mat Sci \& Engn, Charlottesville, VA 22903 USA.}},
66 Author = {Dou, YS and Zhigilei, LV and Winograd, N and Garrison, BJ},
67 Date-Added = {2010-03-11 15:32:14 -0500},
68 Date-Modified = {2010-03-11 15:32:14 -0500},
69 Doc-Delivery-Number = {{416ED}},
70 Issn = {{1089-5639}},
71 Journal = {{JOURNAL OF PHYSICAL CHEMISTRY A}},
72 Journal-Iso = {{J. Phys. Chem. A}},
73 Keywords-Plus = {{MOLECULAR-DYNAMICS SIMULATIONS; ASSISTED LASER-DESORPTION; FROZEN AQUEOUS-SOLUTIONS; COMPUTER-SIMULATION; ORGANIC-SOLIDS; VELOCITY DISTRIBUTIONS; PARTICLE BOMBARDMENT; MASS-SPECTROMETRY; PHASE EXPLOSION; LIQUID WATER}},
74 Language = {{English}},
75 Month = {{MAR 29}},
76 Number = {{12}},
77 Number-Of-Cited-References = {{65}},
78 Pages = {{2748-2755}},
79 Publisher = {{AMER CHEMICAL SOC}},
80 Subject-Category = {{Chemistry, Physical; Physics, Atomic, Molecular \& Chemical}},
81 Times-Cited = {{66}},
82 Title = {{Explosive boiling of water films adjacent to heated surfaces: A microscopic description}},
83 Type = {{Article}},
84 Unique-Id = {{ISI:000167766600035}},
85 Volume = {{105}},
86 Year = {{2001}}}
87
88 @article{ISI:000273472300004,
89 Abstract = {{The reverse nonequilibrium molecular dynamics (RNEMD) method calculates
90 the shear viscosity of a fluid by imposing a nonphysical exchange of
91 momentum and measuring the resulting shear velocity gradient. In this
92 study we investigate the range of momentum flux values over which RNEMD
93 yields usable (linear) velocity gradients. We find that nonlinear
94 velocity profiles result primarily from gradients in fluid temperature
95 and density. The temperature gradient results from conversion of heat
96 into bulk kinetic energy, which is transformed back into heat elsewhere
97 via viscous heating. An expression is derived to predict the
98 temperature profile resulting from a specified momentum flux for a
99 given fluid and simulation cell. Although primarily bounded above, we
100 also describe milder low-flux limitations. RNEMD results for a
101 Lennard-Jones fluid agree with equilibrium molecular dynamics and
102 conventional nonequilibrium molecular dynamics calculations at low
103 shear, but RNEMD underpredicts viscosity relative to conventional NEMD
104 at high shear.}},
105 Address = {{CIRCULATION \& FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1, MELVILLE, NY 11747-4501 USA}},
106 Affiliation = {{Tenney, CM (Reprint Author), Univ Notre Dame, Dept Chem \& Biomol Engn, 182 Fitzpatrick Hall, Notre Dame, IN 46556 USA. {[}Tenney, Craig M.; Maginn, Edward J.] Univ Notre Dame, Dept Chem \& Biomol Engn, Notre Dame, IN 46556 USA.}},
107 Article-Number = {{014103}},
108 Author = {Tenney, Craig M. and Maginn, Edward J.},
109 Author-Email = {{ed@nd.edu}},
110 Date-Added = {2010-03-09 13:08:41 -0500},
111 Date-Modified = {2010-03-09 13:08:41 -0500},
112 Doc-Delivery-Number = {{542DQ}},
113 Doi = {{10.1063/1.3276454}},
114 Funding-Acknowledgement = {{U.S. Department of Energy {[}DE-FG36-08G088020]}},
115 Funding-Text = {{Support for this work was provided by the U.S. Department of Energy (Grant No. DE-FG36-08G088020)}},
116 Issn = {{0021-9606}},
117 Journal = {{JOURNAL OF CHEMICAL PHYSICS}},
118 Journal-Iso = {{J. Chem. Phys.}},
119 Keywords = {{Lennard-Jones potential; molecular dynamics method; Navier-Stokes equations; viscosity}},
120 Keywords-Plus = {{CURRENT AUTOCORRELATION-FUNCTION; IONIC LIQUID; SIMULATIONS; TEMPERATURE}},
121 Language = {{English}},
122 Month = {{JAN 7}},
123 Number = {{1}},
124 Number-Of-Cited-References = {{20}},
125 Publisher = {{AMER INST PHYSICS}},
126 Subject-Category = {{Physics, Atomic, Molecular \& Chemical}},
127 Times-Cited = {{0}},
128 Title = {{Limitations and recommendations for the calculation of shear viscosity using reverse nonequilibrium molecular dynamics}},
129 Type = {{Article}},
130 Unique-Id = {{ISI:000273472300004}},
131 Volume = {{132}},
132 Year = {{2010}},
133 Bdsk-Url-1 = {http://dx.doi.org/10.1063/1.3276454%7D}}
134
135 @article{Clancy:1992,
136 Abstract = {{The regrowth velocity of a crystal from a melt depends on contributions
137 from the thermal conductivity, heat gradient, and latent heat. The
138 relative contributions of these terms to the regrowth velocity of the
139 pure metals copper and gold during liquid-phase epitaxy are evaluated.
140 These results are used to explain how results from previous
141 nonequilibrium molecular-dynamics simulations using classical
142 potentials are able to predict regrowth velocities that are close to
143 the experimental values. Results from equilibrium molecular dynamics
144 showing the nature of the solid-vapor interface of an
145 embedded-atom-method-modeled Cu57Ni43 alloy at a temperature
146 corresponding to 62\% of the melting point are presented. The regrowth
147 of this alloy following a simulation of a laser-processing experiment
148 is also given, with use of nonequilibrium molecular-dynamics
149 techniques. The thermal conductivity and temperature gradient in the
150 simulation of the alloy are compared to those for the pure metals.}},
151 Address = {{ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA}},
152 Affiliation = {{CORNELL UNIV,SCH CHEM ENGN,ITHACA,NY 14853.}},
153 Author = {RICHARDSON, CF and CLANCY, P},
154 Date-Added = {2010-01-12 16:17:33 -0500},
155 Date-Modified = {2010-04-08 17:18:25 -0400},
156 Doc-Delivery-Number = {{HX378}},
157 Issn = {{0163-1829}},
158 Journal = {{PHYSICAL REVIEW B}},
159 Journal-Iso = {{Phys. Rev. B}},
160 Keywords-Plus = {{SURFACE SEGREGATION; MOLECULAR-DYNAMICS; TRANSITION-METALS; SOLIDIFICATION; GROWTH; CU; NI}},
161 Language = {{English}},
162 Month = {{JUN 1}},
163 Number = {{21}},
164 Number-Of-Cited-References = {{24}},
165 Pages = {{12260-12268}},
166 Publisher = {{AMERICAN PHYSICAL SOC}},
167 Subject-Category = {{Physics, Condensed Matter}},
168 Times-Cited = {{11}},
169 Title = {{CONTRIBUTION OF THERMAL-CONDUCTIVITY TO THE CRYSTAL-REGROWTH VELOCITY OF EMBEDDED-ATOM-METHOD-MODELED METALS AND METAL-ALLOYS}},
170 Type = {{Article}},
171 Unique-Id = {{ISI:A1992HX37800010}},
172 Volume = {{45}},
173 Year = {{1992}}}
174
175 @article{ISI:000090151400044,
176 Abstract = {{We have applied a new nonequilibrium molecular dynamics (NEMD) method
177 {[}F. Muller-Plathe, J. Chem. Phys. 106, 6082 (1997)] previously
178 applied to monatomic Lennard-Jones fluids in the determination of the
179 thermal conductivity of molecular fluids. The method was modified in
180 order to be applicable to systems with holonomic constraints. Because
181 the method involves imposing a known heat flux it is particularly
182 attractive for systems involving long-range and many-body interactions
183 where calculation of the microscopic heat flux is difficult. The
184 predicted thermal conductivities of liquid n-butane and water using the
185 imposed-flux NEMD method were found to be in a good agreement with
186 previous simulations and experiment. (C) 2000 American Institute of
187 Physics. {[}S0021-9606(00)50841-1].}},
188 Address = {{2 HUNTINGTON QUADRANGLE, STE 1NO1, MELVILLE, NY 11747-4501 USA}},
189 Affiliation = {{Bedrov, D (Reprint Author), Univ Utah, Dept Chem \& Fuels Engn, 122 S Cent Campus Dr,Rm 304, Salt Lake City, UT 84112 USA. Univ Utah, Dept Chem \& Fuels Engn, Salt Lake City, UT 84112 USA. Univ Utah, Dept Mat Sci \& Engn, Salt Lake City, UT 84112 USA.}},
190 Author = {Bedrov, D and Smith, GD},
191 Date-Added = {2009-11-05 18:21:18 -0500},
192 Date-Modified = {2009-11-05 18:21:18 -0500},
193 Doc-Delivery-Number = {{369BF}},
194 Issn = {{0021-9606}},
195 Journal = {{JOURNAL OF CHEMICAL PHYSICS}},
196 Journal-Iso = {{J. Chem. Phys.}},
197 Keywords-Plus = {{EFFECTIVE PAIR POTENTIALS; TRANSPORT-PROPERTIES; CANONICAL ENSEMBLE; NORMAL-BUTANE; ALGORITHMS; SHAKE; WATER}},
198 Language = {{English}},
199 Month = {{NOV 8}},
200 Number = {{18}},
201 Number-Of-Cited-References = {{26}},
202 Pages = {{8080-8084}},
203 Publisher = {{AMER INST PHYSICS}},
204 Subject-Category = {{Physics, Atomic, Molecular \& Chemical}},
205 Times-Cited = {{23}},
206 Title = {{Thermal conductivity of molecular fluids from molecular dynamics simulations: Application of a new imposed-flux method}},
207 Type = {{Article}},
208 Unique-Id = {{ISI:000090151400044}},
209 Volume = {{113}},
210 Year = {{2000}}}
211
212 @article{ISI:000231042800044,
213 Abstract = {{The reverse nonequilibrium molecular dynamics method for thermal
214 conductivities is adapted to the investigation of molecular fluids. The
215 method generates a heat flux through the system by suitably exchanging
216 velocities of particles located in different regions. From the
217 resulting temperature gradient, the thermal conductivity is then
218 calculated. Different variants of the algorithm and their combinations
219 with other system parameters are tested: exchange of atomic velocities
220 versus exchange of molecular center-of-mass velocities, different
221 exchange frequencies, molecular models with bond constraints versus
222 models with flexible bonds, united-atom versus all-atom models, and
223 presence versus absence of a thermostat. To help establish the range of
224 applicability, the algorithm is tested on different models of benzene,
225 cyclohexane, water, and n-hexane. We find that the algorithm is robust
226 and that the calculated thermal conductivities are insensitive to
227 variations in its control parameters. The force field, in contrast, has
228 a major influence on the value of the thermal conductivity. While
229 calculated and experimental thermal conductivities fall into the same
230 order of magnitude, in most cases the calculated values are
231 systematically larger. United-atom force fields seem to do better than
232 all-atom force fields, possibly because they remove high-frequency
233 degrees of freedom from the simulation, which, in nature, are
234 quantum-mechanical oscillators in their ground state and do not
235 contribute to heat conduction.}},
236 Address = {{1155 16TH ST, NW, WASHINGTON, DC 20036 USA}},
237 Affiliation = {{Zhang, MM (Reprint Author), Int Univ Bremen, POB 750 561, D-28725 Bremen, Germany. Int Univ Bremen, D-28725 Bremen, Germany. Banco Cent Brasil, Desup, Diesp, BR-01310922 Sao Paulo, Brazil.}},
238 Author = {Zhang, MM and Lussetti, E and de Souza, LES and Muller-Plathe, F},
239 Date-Added = {2009-11-05 18:17:33 -0500},
240 Date-Modified = {2009-11-05 18:17:33 -0500},
241 Doc-Delivery-Number = {{952YQ}},
242 Doi = {{10.1021/jp0512255}},
243 Issn = {{1520-6106}},
244 Journal = {{JOURNAL OF PHYSICAL CHEMISTRY B}},
245 Journal-Iso = {{J. Phys. Chem. B}},
246 Keywords-Plus = {{LENNARD-JONES LIQUIDS; TRANSPORT-COEFFICIENTS; SWOLLEN POLYMERS; SHEAR VISCOSITY; MODEL SYSTEMS; SIMULATION; BENZENE; FLUIDS; POTENTIALS; DIFFUSION}},
247 Language = {{English}},
248 Month = {{AUG 11}},
249 Number = {{31}},
250 Number-Of-Cited-References = {{42}},
251 Pages = {{15060-15067}},
252 Publisher = {{AMER CHEMICAL SOC}},
253 Subject-Category = {{Chemistry, Physical}},
254 Times-Cited = {{17}},
255 Title = {{Thermal conductivities of molecular liquids by reverse nonequilibrium molecular dynamics}},
256 Type = {{Article}},
257 Unique-Id = {{ISI:000231042800044}},
258 Volume = {{109}},
259 Year = {{2005}},
260 Bdsk-Url-1 = {http://dx.doi.org/10.1021/jp0512255%7D}}
261
262 @article{ISI:A1997YC32200056,
263 Abstract = {{Equilibrium molecular dynamics simulations have been carried out in the
264 microcanonical ensemble at 300 and 255 K on the extended simple point
265 charge (SPC/E) model of water {[}Berendsen et al., J. Phys. Chem. 91,
266 6269 (1987)]. In addition to a number of static and dynamic properties,
267 thermal conductivity lambda has been calculated via Green-Kubo
268 integration of the heat current time correlation functions (CF's) in
269 the atomic and molecular formalism, at wave number k=0. The calculated
270 values (0.67 +/- 0.04 W/mK at 300 K and 0.52 +/- 0.03 W/mK at 255 K)
271 are in good agreement with the experimental data (0.61 W/mK at 300 K
272 and 0.49 W/mK at 255 K). A negative long-time tail of the heat current
273 CF, more apparent at 255 K, is responsible for the anomalous decrease
274 of lambda with temperature. An analysis of the dynamical modes
275 contributing to lambda has shown that its value is due to two
276 low-frequency exponential-like modes, a faster collisional mode, with
277 positive contribution, and a slower one, which determines the negative
278 long-time tail. A comparison of the molecular and atomic spectra of the
279 heat current CF has suggested that higher-frequency modes should not
280 contribute to lambda in this temperature range. Generalized thermal
281 diffusivity D-T(k) decreases as a function of k, after an initial minor
282 increase at k = k(min). The k dependence of the generalized
283 thermodynamic properties has been calculated in the atomic and
284 molecular formalisms. The observed differences have been traced back to
285 intramolecular or intermolecular rotational effects and related to the
286 partial structure functions. Finally, from the results we calculated it
287 appears that the SPC/E model gives results in better agreement with
288 experimental data than the transferable intermolecular potential with
289 four points TIP4P water model {[}Jorgensen et al., J. Chem. Phys. 79,
290 926 (1983)], with a larger improvement for, e.g., diffusion,
291 viscosities, and dielectric properties and a smaller one for thermal
292 conductivity. The SPC/E model shares, to a smaller extent, the
293 insufficient slowing down of dynamics at low temperature already found
294 for the TIP4P water model.}},
295 Address = {{ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA}},
296 Affiliation = {{UNIV PISA,DIPARTIMENTO CHIM \& CHIM IND,I-56126 PISA,ITALY. CNR,IST FIS ATOM \& MOL,I-56127 PISA,ITALY.}},
297 Author = {Bertolini, D and Tani, A},
298 Date-Added = {2009-10-30 15:41:21 -0400},
299 Date-Modified = {2009-10-30 15:41:21 -0400},
300 Doc-Delivery-Number = {{YC322}},
301 Issn = {{1063-651X}},
302 Journal = {{PHYSICAL REVIEW E}},
303 Journal-Iso = {{Phys. Rev. E}},
304 Keywords-Plus = {{TIME-CORRELATION-FUNCTIONS; LENNARD-JONES LIQUID; TRANSPORT-PROPERTIES; SUPERCOOLED WATER; DENSITY; SIMULATIONS; RELAXATION; VELOCITY; ELECTRON; FLUIDS}},
305 Language = {{English}},
306 Month = {{OCT}},
307 Number = {{4}},
308 Number-Of-Cited-References = {{35}},
309 Pages = {{4135-4151}},
310 Publisher = {{AMERICAN PHYSICAL SOC}},
311 Subject-Category = {{Physics, Fluids \& Plasmas; Physics, Mathematical}},
312 Times-Cited = {{18}},
313 Title = {{Thermal conductivity of water: Molecular dynamics and generalized hydrodynamics results}},
314 Type = {{Article}},
315 Unique-Id = {{ISI:A1997YC32200056}},
316 Volume = {{56}},
317 Year = {{1997}}}
318
319 @article{Meineke:2005gd,
320 Abstract = {OOPSE is a new molecular dynamics simulation program that is capable of efficiently integrating equations of motion for atom types with orientational degrees of freedom (e.g. "sticky" atoms and point dipoles). Transition metals can also be simulated using the embedded atom method (EAM) potential included in the code. Parallel simulations are carried out using the force-based decomposition method. Simulations are specified using a very simple C-based meta-data language. A number of advanced integrators are included, and the basic integrator for orientational dynamics provides substantial improvements over older quaternion-based schemes. (C) 2004 Wiley Periodicals, Inc.},
321 Address = {111 RIVER ST, HOBOKEN, NJ 07030 USA},
322 Author = {Meineke, MA and Vardeman, CF and Lin, T and Fennell, CJ and Gezelter, JD},
323 Date-Added = {2009-10-01 18:43:03 -0400},
324 Date-Modified = {2009-10-01 18:43:03 -0400},
325 Doi = {DOI 10.1002/jcc.20161},
326 Isi = {000226558200006},
327 Isi-Recid = {142688207},
328 Isi-Ref-Recids = {67885400 50663994 64190493 93668415 46699855 89992422 57614458 49016001 61447131 111114169 68770425 52728075 102422498 66381878 32391149 134477335 53221357 9929643 59492217 69681001 99223832 142688208 94600872 91658572 54857943 117365867 69323123 49588888 109970172 101670714 142688209 121603296 94652379 96449138 99938010 112825758 114905670 86802042 121339042 104794914 82674909 72096791 93668384 90513335 142688210 23060767 63731466 109033408 76303716 31384453 97861662 71842426 130707771 125809946 66381889 99676497},
329 Journal = {Journal of Computational Chemistry},
330 Keywords = {OOPSE; molecular dynamics},
331 Month = feb,
332 Number = {3},
333 Pages = {252-271},
334 Publisher = {JOHN WILEY \& SONS INC},
335 Times-Cited = {9},
336 Title = {OOPSE: An object-oriented parallel simulation engine for molecular dynamics},
337 Volume = {26},
338 Year = {2005},
339 Bdsk-Url-1 = {http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=Alerting&SrcApp=Alerting&DestApp=WOS&DestLinkType=FullRecord;KeyUT=000226558200006}}
340
341 @article{ISI:000080382700030,
342 Abstract = {A nonequilibrium method for calculating the shear viscosity is
343 presented. It reverses the cause-and-effect picture customarily used in
344 nonequilibrium molecular dynamics: the effect, the momentum flux or
345 stress, is imposed, whereas the cause, the velocity gradient or shear
346 rate, is obtained from the simulation. It differs from other
347 Norton-ensemble methods by the way in which the steady-state momentum
348 flux is maintained. This method involves a simple exchange of particle
349 momenta, which is easy to implement. Moreover, it can be made to
350 conserve the total energy as well as the total linear momentum, so no
351 coupling to an external temperature bath is needed. The resulting raw
352 data, the velocity profile, is a robust and rapidly converging
353 property. The method is tested on the Lennard-Jones fluid near its
354 triple point. It yields a viscosity of 3.2-3.3, in Lennard-Jones
355 reduced units, in agreement with literature results.
356 {[}S1063-651X(99)03105-0].},
357 Address = {ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA},
358 Affiliation = {Muller-Plathe, F (Reprint Author), Max Planck Inst Polymerforsch, Ackermannweg 10, D-55128 Mainz, Germany. Max Planck Inst Polymerforsch, D-55128 Mainz, Germany.},
359 Author = {Muller-Plathe, F},
360 Date-Added = {2009-10-01 14:07:30 -0400},
361 Date-Modified = {2009-10-01 14:07:30 -0400},
362 Doc-Delivery-Number = {197TX},
363 Issn = {1063-651X},
364 Journal = {PHYSICAL REVIEW E},
365 Journal-Iso = {Phys. Rev. E},
366 Language = {English},
367 Month = {MAY},
368 Number = {5, Part A},
369 Number-Of-Cited-References = {17},
370 Pages = {4894-4898},
371 Publisher = {AMERICAN PHYSICAL SOC},
372 Subject-Category = {Physics, Fluids \& Plasmas; Physics, Mathematical},
373 Times-Cited = {57},
374 Title = {Reversing the perturbation in nonequilibrium molecular dynamics: An easy way to calculate the shear viscosity of fluids},
375 Type = {Article},
376 Unique-Id = {ISI:000080382700030},
377 Volume = {59},
378 Year = {1999}}
379
380 @article{ISI:000246190100032,
381 Abstract = {Atomistic simulations are conducted to examine the dependence of the
382 viscosity of 1-ethyl-3-methylimidazolium
383 bis(trifluoromethanesulfonyl)imide on temperature and water content. A
384 nonequilibrium molecular dynamics procedure is utilized along with an
385 established fixed charge force field. It is found that the simulations
386 quantitatively capture the temperature dependence of the viscosity as
387 well as the drop in viscosity that occurs with increasing water
388 content. Using mixture viscosity models, we show that the relative drop
389 in viscosity with water content is actually less than that that would
390 be predicted for an ideal system. This finding is at odds with the
391 popular notion that small amounts of water cause an unusually large
392 drop in the viscosity of ionic liquids. The simulations suggest that,
393 due to preferential association of water with anions and the formation
394 of water clusters, the excess molar volume is negative. This means that
395 dissolved water is actually less effective at lowering the viscosity of
396 these mixtures when compared to a solute obeying ideal mixing behavior.
397 The use of a nonequilibrium simulation technique enables diffusive
398 behavior to be observed on the time scale of the simulations, and
399 standard equilibrium molecular dynamics resulted in sub-diffusive
400 behavior even over 2 ns of simulation time.},
401 Address = {1155 16TH ST, NW, WASHINGTON, DC 20036 USA},
402 Affiliation = {Maginn, EJ (Reprint Author), Univ Notre Dame, Dept Chem \& Biomol Engn, 182 Fitzpatrick Hall, Notre Dame, IN 46556 USA. Univ Notre Dame, Dept Chem \& Biomol Engn, Notre Dame, IN 46556 USA.},
403 Author = {Kelkar, Manish S. and Maginn, Edward J.},
404 Author-Email = {ed@nd.edu},
405 Date-Added = {2009-09-29 17:07:17 -0400},
406 Date-Modified = {2009-09-29 17:07:17 -0400},
407 Doc-Delivery-Number = {163VA},
408 Doi = {10.1021/jp0686893},
409 Issn = {1520-6106},
410 Journal = {JOURNAL OF PHYSICAL CHEMISTRY B},
411 Journal-Iso = {J. Phys. Chem. B},
412 Keywords-Plus = {MOLECULAR-DYNAMICS SIMULATION; MOMENTUM IMPULSE RELAXATION; FORCE-FIELD; TRANSPORT-PROPERTIES; PHYSICAL-PROPERTIES; SIMPLE FLUID; CHLORIDE; MODEL; SALTS; ARCHITECTURE},
413 Language = {English},
414 Month = {MAY 10},
415 Number = {18},
416 Number-Of-Cited-References = {57},
417 Pages = {4867-4876},
418 Publisher = {AMER CHEMICAL SOC},
419 Subject-Category = {Chemistry, Physical},
420 Times-Cited = {35},
421 Title = {Effect of temperature and water content on the shear viscosity of the ionic liquid 1-ethyl-3-methylimidazolium bis(trifluoromethanesulfonyl)imide as studied by atomistic simulations},
422 Type = {Article},
423 Unique-Id = {ISI:000246190100032},
424 Volume = {111},
425 Year = {2007},
426 Bdsk-Url-1 = {http://dx.doi.org/10.1021/jp0686893%7D}}
427
428 @article{MullerPlathe:1997xw,
429 Abstract = {A nonequilibrium molecular dynamics method for calculating the thermal conductivity is presented. It reverses the usual cause and effect picture. The ''effect,'' the heat flux, is imposed on the system and the ''cause,'' the temperature gradient is obtained from the simulation. Besides being very simple to implement, the scheme offers several advantages such as compatibility with periodic boundary conditions, conservation of total energy and total linear momentum, and the sampling of a rapidly converging quantity (temperature gradient) rather than a slowly converging one (heat flux). The scheme is tested on the Lennard-Jones fluid. (C) 1997 American Institute of Physics.},
430 Address = {WOODBURY},
431 Author = {MullerPlathe, F.},
432 Cited-Reference-Count = {13},
433 Date = {APR 8},
434 Date-Added = {2009-09-21 16:51:21 -0400},
435 Date-Modified = {2009-09-21 16:51:21 -0400},
436 Document-Type = {Article},
437 Isi = {ISI:A1997WR62000032},
438 Isi-Document-Delivery-Number = {WR620},
439 Iso-Source-Abbreviation = {J. Chem. Phys.},
440 Issn = {0021-9606},
441 Journal = {JOURNAL OF CHEMICAL PHYSICS},
442 Language = {English},
443 Month = {Apr},
444 Number = {14},
445 Page-Count = {4},
446 Pages = {6082--6085},
447 Publication-Type = {J},
448 Publisher = {AMER INST PHYSICS},
449 Publisher-Address = {CIRCULATION FULFILLMENT DIV, 500 SUNNYSIDE BLVD, WOODBURY, NY 11797-2999},
450 Reprint-Address = {MullerPlathe, F, MAX PLANCK INST POLYMER RES, D-55128 MAINZ, GERMANY.},
451 Source = {J CHEM PHYS},
452 Subject-Category = {Physics, Atomic, Molecular & Chemical},
453 Times-Cited = {106},
454 Title = {A simple nonequilibrium molecular dynamics method for calculating the thermal conductivity},
455 Volume = {106},
456 Year = {1997}}
457
458 @article{Muller-Plathe:1999ek,
459 Abstract = {A novel non-equilibrium method for calculating transport coefficients is presented. It reverses the experimental cause-and-effect picture, e.g. for the calculation of viscosities: the effect, the momentum flux or stress, is imposed, whereas the cause, the velocity gradient or shear rates, is obtained from the simulation. It differs from other Norton-ensemble methods by the way, in which the steady-state fluxes are maintained. This method involves a simple exchange of particle momenta, which is easy to implement and to analyse. Moreover, it can be made to conserve the total energy as well as the total linear momentum, so no thermostatting is needed. The resulting raw data are robust and rapidly converging. The method is tested on the calculation of the shear viscosity, the thermal conductivity and the Soret coefficient (thermal diffusion) for the Lennard-Jones (LJ) fluid near its triple point. Possible applications to other transport coefficients and more complicated systems are discussed. (C) 1999 Elsevier Science Ltd. All rights reserved.},
460 Address = {THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND},
461 Author = {Muller-Plathe, F and Reith, D},
462 Date-Added = {2009-09-21 16:47:07 -0400},
463 Date-Modified = {2009-09-21 16:47:07 -0400},
464 Isi = {000082266500004},
465 Isi-Recid = {111564960},
466 Isi-Ref-Recids = {64516210 89773595 53816621 60134000 94875498 60964023 90228608 85968509 86405859 63979644 108048497 87560156 577165 103281654 111564961 83735333 99953572 88476740 110174781 111564963 6599000 75892253},
467 Journal = {Computational and Theoretical Polymer Science},
468 Keywords = {viscosity; Ludwig-Soret effect; thermal conductivity; Onsager coefficents; non-equilibrium molecular dynamics},
469 Number = {3-4},
470 Pages = {203-209},
471 Publisher = {ELSEVIER SCI LTD},
472 Times-Cited = {15},
473 Title = {Cause and effect reversed in non-equilibrium molecular dynamics: an easy route to transport coefficients},
474 Volume = {9},
475 Year = {1999},
476 Bdsk-Url-1 = {http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=Alerting&SrcApp=Alerting&DestApp=WOS&DestLinkType=FullRecord;KeyUT=000082266500004}}
477
478 @article{Viscardy:2007lq,
479 Abstract = {The thermal conductivity is calculated with the Helfand-moment method in the Lennard-Jones fluid near the triple point. The Helfand moment of thermal conductivity is here derived for molecular dynamics with periodic boundary conditions. Thermal conductivity is given by a generalized Einstein relation with this Helfand moment. The authors compute thermal conductivity by this new method and compare it with their own values obtained by the standard Green-Kubo method. The agreement is excellent. (C) 2007 American Institute of Physics.},
480 Address = {CIRCULATION \& FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1, MELVILLE, NY 11747-4501 USA},
481 Author = {Viscardy, S. and Servantie, J. and Gaspard, P.},
482 Date-Added = {2009-09-21 16:37:20 -0400},
483 Date-Modified = {2009-09-21 16:37:20 -0400},
484 Doi = {DOI 10.1063/1.2724821},
485 Isi = {000246453900035},
486 Isi-Recid = {156192451},
487 Isi-Ref-Recids = {18794442 84473620 156192452 41891249 90040203 110174972 59859940 47256160 105716249 91804339 93329429 95967319 6199670 1785176 105872066 6325196 65361295 71941152 4307928 23120502 54053395 149068110 4811016 99953572 59859908 132156782 156192449},
488 Journal = {Journal of Chemical Physics},
489 Month = may,
490 Number = {18},
491 Publisher = {AMER INST PHYSICS},
492 Times-Cited = {3},
493 Title = {Transport and Helfand moments in the Lennard-Jones fluid. II. Thermal conductivity},
494 Volume = {126},
495 Year = {2007},
496 Bdsk-Url-1 = {http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=Alerting&SrcApp=Alerting&DestApp=WOS&DestLinkType=FullRecord;KeyUT=000246453900035}}
497
498 @article{Viscardy:2007bh,
499 Abstract = {The authors propose a new method, the Helfand-moment method, to compute the shear viscosity by equilibrium molecular dynamics in periodic systems. In this method, the shear viscosity is written as an Einstein-type relation in terms of the variance of the so-called Helfand moment. This quantity is modified in order to satisfy systems with periodic boundary conditions usually considered in molecular dynamics. They calculate the shear viscosity in the Lennard-Jones fluid near the triple point thanks to this new technique. They show that the results of the Helfand-moment method are in excellent agreement with the results of the standard Green-Kubo method. (C) 2007 American Institute of Physics.},
500 Address = {CIRCULATION \& FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1, MELVILLE, NY 11747-4501 USA},
501 Author = {Viscardy, S. and Servantie, J. and Gaspard, P.},
502 Date-Added = {2009-09-21 16:37:19 -0400},
503 Date-Modified = {2009-09-21 16:37:19 -0400},
504 Doi = {DOI 10.1063/1.2724820},
505 Isi = {000246453900034},
506 Isi-Recid = {156192449},
507 Isi-Ref-Recids = {18794442 89109900 84473620 86837966 26564374 23367140 83161139 75750220 90040203 110174972 5885 67722779 91461489 42484251 77907850 93329429 95967319 105716249 6199670 1785176 105872066 6325196 129596740 120782555 51131244 65361295 41141868 4307928 21555860 23120502 563068 120721875 142813985 135942402 4811016 86224873 57621419 85506488 89860062 44796632 51381285 132156779 156192450 132156782 156192451},
508 Journal = {Journal of Chemical Physics},
509 Month = may,
510 Number = {18},
511 Publisher = {AMER INST PHYSICS},
512 Times-Cited = {1},
513 Title = {Transport and Helfand moments in the Lennard-Jones fluid. I. Shear viscosity},
514 Volume = {126},
515 Year = {2007},
516 Bdsk-Url-1 = {http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=Alerting&SrcApp=Alerting&DestApp=WOS&DestLinkType=FullRecord;KeyUT=000246453900034}}