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root/group/trunk/nonperiodicVSS/nonperiodicVSS.aux
Revision: 4009
Committed: Thu Jan 23 23:26:39 2014 UTC (10 years, 5 months ago) by kstocke1
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# User Rev Content
1 kstocke1 3927 \relax
2     \citation{achemso-control}
3     \providecommand{\mciteSetMaxWidth}[3]{\relax}
4     \providecommand{\mciteSetMaxCount}[3]{\relax}
5     \bibstyle{achemso}
6 gezelter 3977 \citation{ASHURST:1975tg}
7     \citation{Evans:1982zk}
8     \citation{ERPENBECK:1984sp}
9     \citation{MAGINN:1993hc}
10     \citation{Berthier:2002ij}
11     \citation{Evans:2002ai}
12 kstocke1 4009 \citation{Schelling:2 002dp}
13 gezelter 3977 \citation{PhysRevA.34.1449}
14     \citation{JiangHao_jp802942v}
15 kstocke1 4009 \citation{ASHURST:1975tg,Evans:1982zk,ERPENBECK:1984sp,MAGINN:1993hc,Berthier:2002ij,Evans:2002ai,Schelling:2 002dp,PhysRevA.34.1449,JiangHao_jp802942v}
16 gezelter 3977 \citation{MullerPlathe:1997xw}
17     \citation{ISI:000080382700030}
18 kstocke1 4003 \citation{Kuang2010}
19     \citation{MullerPlathe:1997xw,ISI:000080382700030,Kuang2010}
20 gezelter 3977 \citation{Maginn:2010}
21     \citation{MullerPlathe:1997xw,ISI:000080382700030,Maginn:2010}
22     \citation{garde:nl2005}
23     \citation{garde:PhysRevLett2009}
24     \citation{kuang:AuThl}
25     \citation{garde:nl2005,garde:PhysRevLett2009,kuang:AuThl}
26 kstocke1 4003 \citation{Kuang2012}
27     \citation{Kuang2012}
28 gezelter 3977 \@writefile{toc}{\contentsline {section}{\numberline {1}Introduction}{2}}
29     \@writefile{toc}{\contentsline {section}{\numberline {2}Velocity Shearing and Scaling (VSS) for non-periodic systems}{2}}
30 kstocke1 4009 \@writefile{lof}{\contentsline {figure}{\numberline {1}{\ignorespaces Schematics of periodic (left) and non-periodic (right) Velocity Shearing and Scaling RNEMD. A kinetic energy or momentum flux is applied from region B to region A. Thermal gradients are depicted by a color gradient. Linear or angular velocity gradients are shown as arrows.\relax }}{3}}
31     \providecommand*\caption@xref[2]{\@setref\relax\@undefined{#1}}
32     \newlabel{fig:VSS}{{1}{3}}
33     \newlabel{eq:bc}{{1}{4}}
34     \newlabel{eq:bh}{{2}{4}}
35 gezelter 3977 \newlabel{eq:Kc}{{3}{4}}
36     \newlabel{eq:Kh}{{4}{4}}
37 kstocke1 4009 \citation{openmd}
38     \citation{openmd}
39     \citation{PhysRevB.59.3527}
40     \citation{PhysRevB.59.3527}
41 kstocke1 3947 \citation{Bedrov:2000}
42     \citation{Bedrov:2000,Kuang2010}
43     \citation{TraPPE-UA.alkanes}
44     \citation{TraPPE-UA.alkanes}
45     \citation{kuang:AuThl,Kuang2012}
46 kstocke1 4009 \@writefile{toc}{\contentsline {section}{\numberline {3}Computational Details}{5}}
47     \@writefile{toc}{\contentsline {subsection}{\numberline {3.1}Force field parameters}{5}}
48 kstocke1 3947 \citation{vlugt:cpc2007154}
49     \citation{vlugt:cpc2007154}
50     \citation{hautman:4994}
51     \citation{hautman:4994}
52 kstocke1 4009 \citation{Vardeman2011}
53     \citation{Vardeman2011}
54     \citation{packmol}
55     \citation{packmol}
56     \@writefile{toc}{\contentsline {subsection}{\numberline {3.2}Simulation protocol}{6}}
57     \@writefile{toc}{\contentsline {subsection}{\numberline {3.3}Thermal conductivities}{7}}
58     \newlabel{eq:Q}{{5}{7}}
59     \newlabel{eq:lambda}{{6}{7}}
60     \newlabel{eq:heat}{{7}{7}}
61     \@writefile{toc}{\contentsline {subsection}{\numberline {3.4}Interfacial thermal conductance}{7}}
62     \@writefile{lof}{\contentsline {figure}{\numberline {2}{\ignorespaces A gold nanoparticle with a radius of 20 \r A$\tmspace +\thinmuskip {.1667em}$ solvated in TraPPE-UA hexane. A thermal flux is applied between the nanoparticle and an outer shell of solvent.\relax }}{8}}
63     \newlabel{fig:NP20}{{2}{8}}
64     \newlabel{eq:RK}{{8}{9}}
65     \newlabel{eq:Rtotal}{{9}{9}}
66     \@writefile{toc}{\contentsline {subsection}{\numberline {3.5}Interfacial rotational friction}{9}}
67     \newlabel{eq:Xisphere}{{10}{9}}
68     \@writefile{lof}{\contentsline {figure}{\numberline {3}{\ignorespaces A gold prolate ellipsoid of length 65 \r A$\tmspace +\thinmuskip {.1667em}$ and width 25 \r A$\tmspace +\thinmuskip {.1667em}$ solvated by TraPPE-UA hexane. An angular momentum flux is applied between the ellipsoid and an outer shell of solvent.\relax }}{10}}
69     \newlabel{fig:E25-75}{{3}{10}}
70 kstocke1 4003 \citation{Kuang2012}
71     \citation{Zwanzig}
72     \citation{Zwanzig}
73 kstocke1 4009 \newlabel{eq:S}{{11}{11}}
74     \newlabel{eq:Xia}{{12}{11}}
75     \newlabel{eq:Xibc}{{13}{11}}
76     \newlabel{eq:Xieff}{{14}{11}}
77     \newlabel{eq:tau}{{15}{11}}
78 kstocke1 3927 \gdef \LT@i {\LT@entry
79 kstocke1 4003 {1}{69.5093pt}\LT@entry
80     {1}{51.0pt}\LT@entry
81     {1}{58.6495pt}}
82 kstocke1 4009 \citation{Kuang2010}
83     \@writefile{toc}{\contentsline {section}{\numberline {4}Tests and Applications}{12}}
84     \@writefile{toc}{\contentsline {subsection}{\numberline {4.1}Thermal conductivities}{12}}
85     \@writefile{lot}{\contentsline {table}{\numberline {1}{\ignorespaces Calculated thermal conductivity of a crystalline gold nanoparticle of radius 40 \r A. Calculations were performed at 300 K and ambient density. Gold-gold interactions are described by the Quantum Sutton-Chen potential.}}{12}}
86     \newlabel{table:goldTC}{{1}{12}}
87 kstocke1 3992 \citation{Zhang2005}
88     \citation{Zhang2005}
89     \citation{Romer2012}
90 kstocke1 4009 \citation{Romer2012}
91 kstocke1 3992 \citation{WagnerKruse}
92 kstocke1 4009 \citation{WagnerKruse}
93 kstocke1 4003 \gdef \LT@ii {\LT@entry
94     {1}{81.01138pt}\LT@entry
95     {1}{51.0pt}\LT@entry
96     {1}{58.6495pt}}
97 kstocke1 4009 \citation{Romer2012,Zhang2005}
98     \citation{WagnerKruse}
99     \@writefile{lot}{\contentsline {table}{\numberline {2}{\ignorespaces Calculated thermal conductivity of a cluster of 6912 SPC/E water molecules. Calculations were performed at 300 K and 5 atm.}}{13}}
100     \newlabel{table:waterTC}{{2}{13}}
101 kstocke1 3932 \gdef \LT@iii {\LT@entry
102 kstocke1 3973 {1}{110.31483pt}\LT@entry
103 kstocke1 4003 {1}{71.7394pt}\LT@entry
104 kstocke1 3992 {1}{0.0pt}}
105 kstocke1 4009 \@writefile{toc}{\contentsline {subsection}{\numberline {4.2}Interfacial thermal conductance}{14}}
106     \@writefile{lot}{\contentsline {table}{\numberline {3}{\ignorespaces Calculated interfacial thermal conductance ($G$) values for gold nanoparticles of varying radii solvated in explicit TraPPE-UA hexane. The nanoparticle $G$ values are compared to previous results for a Au(111) interface in TraPPE-UA hexane.}}{14}}
107     \newlabel{table:G}{{3}{14}}
108     \@writefile{toc}{\contentsline {subsection}{\numberline {4.3}Interfacial friction}{14}}
109 kstocke1 3973 \gdef \LT@iv {\LT@entry
110     {1}{96.74344pt}\LT@entry
111     {1}{92.00313pt}\LT@entry
112 kstocke1 4003 {1}{64.79945pt}\LT@entry
113     {1}{64.79945pt}\LT@entry
114     {1}{64.79945pt}\LT@entry
115 kstocke1 3994 {1}{64.43709pt}}
116 kstocke1 4009 \@writefile{lot}{\contentsline {table}{\numberline {4}{\ignorespaces Comparison of rotational friction coefficients under ideal ``slip'' ($\Xi ^{rr}_{\mathit {slip}}$) and ``stick'' ($\Xi ^{rr}_{\mathit {stick}}$) conditions and effective ($\Xi ^{rr}_{\mathit {eff}}$) rotational friction coefficients of gold nanostructures solvated in TraPPE-UA hexane at 230 K. The ellipsoid is oriented with the long axis along the $z$ direction.}}{15}}
117     \newlabel{table:couple}{{4}{15}}
118     \@writefile{toc}{\contentsline {section}{\numberline {5}Discussion}{16}}
119 kstocke1 3927 \bibdata{acs-nonperiodicVSS,nonperiodicVSS}
120 kstocke1 4003 \bibcite{ASHURST:1975tg}{{1}{1975}{{Ashurst and Hoover}}{{Ashurst, and Hoover}}}
121     \bibcite{Evans:1982zk}{{2}{1982}{{Evans}}{{}}}
122     \bibcite{ERPENBECK:1984sp}{{3}{1984}{{Erpenbeck}}{{}}}
123     \bibcite{MAGINN:1993hc}{{4}{1993}{{Maginn et~al.}}{{Maginn, Bell, and Theodorou}}}
124     \bibcite{Berthier:2002ij}{{5}{2002}{{Berthier and Barrat}}{{Berthier, and Barrat}}}
125     \bibcite{Evans:2002ai}{{6}{2002}{{Evans and Searles}}{{Evans, and Searles}}}
126 kstocke1 4009 \bibcite{PhysRevA.34.1449}{{7}{1986}{{Evans}}{{}}}
127     \bibcite{JiangHao_jp802942v}{{8}{2008}{{Jiang et~al.}}{{Jiang, Myshakin, Jordan, and Warzinski}}}
128     \bibcite{MullerPlathe:1997xw}{{9}{1997}{{M\"{u}ller-Plathe}}{{}}}
129     \bibcite{ISI:000080382700030}{{10}{1999}{{M\"{u}ller-Plathe}}{{}}}
130     \bibcite{Kuang2010}{{11}{2010}{{Kuang and Gezelter}}{{Kuang, and Gezelter}}}
131     \bibcite{Maginn:2010}{{12}{2010}{{Tenney and Maginn}}{{Tenney, and Maginn}}}
132     \bibcite{garde:nl2005}{{13}{2005}{{Patel et~al.}}{{Patel, Garde, and Keblinski}}}
133     \bibcite{garde:PhysRevLett2009}{{14}{2009}{{Shenogina et~al.}}{{Shenogina, Godawat, Keblinski, and Garde}}}
134     \bibcite{kuang:AuThl}{{15}{2011}{{Kuang and Gezelter}}{{Kuang, and Gezelter}}}
135     \bibcite{Kuang2012}{{16}{2012}{{Kuang and Gezelter}}{{Kuang, and Gezelter}}}
136     \bibcite{openmd}{{17}{}{{Gezelter et~al.}}{{Gezelter, Kuang, Marr, Stocker, Li, Vardeman, Lin, Fennell, Sun, Daily, Zheng, and Meineke}}}
137     \bibcite{PhysRevB.59.3527}{{18}{1999}{{Qi et~al.}}{{Qi, \c {C}a\v {g}in, Kimura, and {Goddard III}}}}
138 kstocke1 4003 \bibcite{Bedrov:2000}{{19}{2000}{{Bedrov and Smith}}{{Bedrov, and Smith}}}
139 kstocke1 4009 \bibcite{TraPPE-UA.alkanes}{{20}{1998}{{Martin and Siepmann}}{{Martin, and Siepmann}}}
140     \bibcite{vlugt:cpc2007154}{{21}{2007}{{Schapotschnikow et~al.}}{{Schapotschnikow, Pool, and Vlugt}}}
141     \bibcite{hautman:4994}{{22}{1989}{{Hautman and Klein}}{{Hautman, and Klein}}}
142     \bibcite{Zwanzig}{{23}{1974}{{Hu and Zwanzig}}{{Hu, and Zwanzig}}}
143     \bibcite{Zhang2005}{{24}{2005}{{Zhang et~al.}}{{Zhang, Lussetti, de~Souza, and M\"{u}ller-Plathe}}}
144     \bibcite{Romer2012}{{25}{2012}{{R{\"o}mer et~al.}}{{R{\"o}mer, Lervik, and Bresme}}}
145 kstocke1 4003 \bibcite{WagnerKruse}{{26}{1998}{{Wagner and Kruse}}{{Wagner, and Kruse}}}
146     \mciteSetMaxCount{main}{bibitem}{26}
147 kstocke1 3947 \mciteSetMaxCount{main}{subitem}{1}
148 kstocke1 3978 \mciteSetMaxWidth{main}{bibitem}{786432}
149     \mciteSetMaxWidth{main}{subitem}{0}

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