trunk/nonperiodicVSS/nonperiodicVSS.log

This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/MacPorts 2013_3) (format=pdflatex 2013.11.13)  22 NOV 2013 17:26
entering extended mode
 restricted \write18 enabled.
 %&-line parsing enabled.
**nonperiodicVSS
(./nonperiodicVSS.tex
LaTeX2e <2011/06/27>
Babel <3.9f> and hyphenation patterns for 2 languages loaded.
(/opt/local/share/texmf-texlive/tex/latex/achemso/achemso.cls
Document Class: achemso 2013/04/13 v3.7g Submission to ACS journals
(/opt/local/share/texmf-texlive/tex/latex/base/article.cls
Document Class: article 2007/10/19 v1.4h Standard LaTeX document class
(/opt/local/share/texmf-texlive/tex/latex/base/size12.clo
File: size12.clo 2007/10/19 v1.4h Standard LaTeX file (size option)
)
\c@part=\count79
\c@section=\count80
\c@subsection=\count81
\c@subsubsection=\count82
\c@paragraph=\count83
\c@subparagraph=\count84
\c@figure=\count85
\c@table=\count86
\abovecaptionskip=\skip41
\belowcaptionskip=\skip42
\bibindent=\dimen102
)
(/opt/local/share/texmf-texlive/tex/latex/xkeyval/xkeyval.sty
Package: xkeyval 2012/10/14 v2.6b package option processing (HA)

(/opt/local/share/texmf-texlive/tex/generic/xkeyval/xkeyval.tex
\XKV@toks=\toks14
\XKV@tempa@toks=\toks15
\XKV@depth=\count87
File: xkeyval.tex 2012/10/14 v2.6b key=value parser (HA)

(/opt/local/share/texmf-texlive/tex/generic/xkeyval/keyval.tex)))
\acs@bib@file=\write3
\c@bibnote=\count88

(/opt/local/share/texmf-texlive/tex/latex/geometry/geometry.sty
Package: geometry 2010/09/12 v5.6 Page Geometry

(/opt/local/share/texmf-texlive/tex/generic/oberdiek/ifpdf.sty
Package: ifpdf 2011/01/30 v2.3 Provides the ifpdf switch (HO)
Package ifpdf Info: pdfTeX in PDF mode is detected.
)
(/opt/local/share/texmf-texlive/tex/generic/oberdiek/ifvtex.sty
Package: ifvtex 2010/03/01 v1.5 Detect VTeX and its facilities (HO)
Package ifvtex Info: VTeX not detected.
)
(/opt/local/share/texmf-texlive/tex/generic/ifxetex/ifxetex.sty
Package: ifxetex 2010/09/12 v0.6 Provides ifxetex conditional
)
\Gm@cnth=\count89
\Gm@cntv=\count90
\c@Gm@tempcnt=\count91
\Gm@bindingoffset=\dimen103
\Gm@wd@mp=\dimen104
\Gm@odd@mp=\dimen105
\Gm@even@mp=\dimen106
\Gm@layoutwidth=\dimen107
\Gm@layoutheight=\dimen108
\Gm@layouthoffset=\dimen109
\Gm@layoutvoffset=\dimen110
\Gm@dimlist=\toks16
)
(/opt/local/share/texmf-texlive/tex/latex/psnfss/helvet.sty
Package: helvet 2005/04/12 PSNFSS-v9.2a (WaS) 
)
(/opt/local/share/texmf-texlive/tex/latex/psnfss/courier.sty
Package: courier 2005/04/12 PSNFSS-v9.2a (WaS) 
)
(/opt/local/share/texmf-texlive/tex/latex/base/fontenc.sty
Package: fontenc 2005/09/27 v1.99g Standard LaTeX package

(/opt/local/share/texmf-texlive/tex/latex/base/t1enc.def
File: t1enc.def 2005/09/27 v1.99g Standard LaTeX file
LaTeX Font Info:    Redeclaring font encoding T1 on input line 43.
))
(/opt/local/share/texmf-texlive/tex/latex/caption/caption.sty
Package: caption 2013/05/02 v3.3-89 Customizing captions (AR)

(/opt/local/share/texmf-texlive/tex/latex/caption/caption3.sty
Package: caption3 2013/05/02 v1.6-88 caption3 kernel (AR)
Package caption3 Info: TeX engine: e-TeX on input line 57.
\captionmargin=\dimen111
\captionmargin@=\dimen112
\captionwidth=\dimen113
\caption@tempdima=\dimen114
\caption@indent=\dimen115
\caption@parindent=\dimen116
\caption@hangindent=\dimen117
)
\c@ContinuedFloat=\count92
)
(/opt/local/share/texmf-texlive/tex/latex/float/float.sty
Package: float 2001/11/08 v1.3d Float enhancements (AL)
\c@float@type=\count93
\float@exts=\toks17
\float@box=\box26
\@float@everytoks=\toks18
\@floatcapt=\box27
)
(/opt/local/share/texmf-texlive/tex/latex/graphics/graphicx.sty
Package: graphicx 1999/02/16 v1.0f Enhanced LaTeX Graphics (DPC,SPQR)

(/opt/local/share/texmf-texlive/tex/latex/graphics/graphics.sty
Package: graphics 2009/02/05 v1.0o Standard LaTeX Graphics (DPC,SPQR)

(/opt/local/share/texmf-texlive/tex/latex/graphics/trig.sty
Package: trig 1999/03/16 v1.09 sin cos tan (DPC)
)
(/opt/local/share/texmf-texlive/tex/latex/latexconfig/graphics.cfg
File: graphics.cfg 2010/04/23 v1.9 graphics configuration of TeX Live
)
Package graphics Info: Driver file: pdftex.def on input line 91.

(/opt/local/share/texmf-texlive/tex/latex/pdftex-def/pdftex.def
File: pdftex.def 2011/05/27 v0.06d Graphics/color for pdfTeX

(/opt/local/share/texmf-texlive/tex/generic/oberdiek/infwarerr.sty
Package: infwarerr 2010/04/08 v1.3 Providing info/warning/error messages (HO)
)
(/opt/local/share/texmf-texlive/tex/generic/oberdiek/ltxcmds.sty
Package: ltxcmds 2011/11/09 v1.22 LaTeX kernel commands for general use (HO)
)
\Gread@gobject=\count94
))
\Gin@req@height=\dimen118
\Gin@req@width=\dimen119
)
(/opt/local/share/texmf-texlive/tex/latex/setspace/setspace.sty
Package: setspace 2011/12/19 v6.7a set line spacing
)
(/opt/local/share/texmf-texlive/tex/latex/url/url.sty
\Urlmuskip=\muskip10
Package: url 2006/04/12  ver 3.3  Verb mode for urls, etc.
)
\acs@author@cnt=\count95
\acs@affil@cnt=\count96
\acs@affil@alt@cnt=\count97
\acs@footnote@cnt=\count98
\acs@affil@marker@cnt=\count99
\acs@space@pre@title=\skip43
\acs@space@post@title=\skip44
\acs@space@post@author=\skip45
\acs@space@post@address=\skip46
\acs@space@post@email=\skip47
\acs@maketitle@width=\skip48
\@float@every@scheme=\toks19
\c@scheme=\count100
\@float@every@chart=\toks20
\c@chart=\count101
\@float@every@graph=\toks21
\c@graph=\count102
\@float@every@table=\toks22
\acs@collect@toks=\toks23
\acs@collect@empty@toks=\toks24
\acs@tocentry@height=\skip49
\acs@tocentry@width=\skip50

(/opt/local/share/texmf-texlive/tex/latex/achemso/config/jctcce.cfg
File: jctcce.cfg 2013/04/13 v3.7g achemso configuration: J. Chem. Theory Comput
.
)
(/opt/local/share/texmf-texlive/tex/latex/natbib/natbib.sty
Package: natbib 2010/09/13 8.31b (PWD, AO)
\bibhang=\skip51
\bibsep=\skip52
LaTeX Info: Redefining \cite on input line 694.
\c@NAT@ctr=\count103
)
(/opt/local/share/texmf-texlive/tex/latex/achemso/natmove.sty
Package: natmove 2010/01/15 v1.1a Automatic citation moving with natbib
)
(/opt/local/share/texmf-texlive/tex/latex/mciteplus/mciteplus.sty
Package: mciteplus 2008/09/30 v1.1 enhanced mcite
\@mcitetmptoksA=\toks25
\@mcitetmpdima=\dimen120
\@mcitetmpdimb=\dimen121
\@mcitetmpcnta=\count104
\@mcitetmpcntb=\count105
\c@mcitebibitemcount=\count106
\c@mcitesubitemcount=\count107

** mciteplus: Detected natbib.sty. Invoking hooks.
)) (/opt/local/share/texmf-texlive/tex/latex/endfloat/endfloat.sty
Package: endfloat 2011/12/25 v2.5d LaTeX2e package puts figures and tables at e
nd (jdm)
\c@postfigure=\count108
\efloat@postfff=\write4
\@ef@fffopen=\count109
\c@posttable=\count110
\efloat@postttt=\write5
\@ef@tttopen=\count111
)
(/opt/local/share/texmf-texlive/tex/latex/amsmath/amsmath.sty
Package: amsmath 2013/01/14 v2.14 AMS math features
\@mathmargin=\skip53

For additional information on amsmath, use the `?' option.
(/opt/local/share/texmf-texlive/tex/latex/amsmath/amstext.sty
Package: amstext 2000/06/29 v2.01

(/opt/local/share/texmf-texlive/tex/latex/amsmath/amsgen.sty
File: amsgen.sty 1999/11/30 v2.0
\@emptytoks=\toks26
\ex@=\dimen122
))
(/opt/local/share/texmf-texlive/tex/latex/amsmath/amsbsy.sty
Package: amsbsy 1999/11/29 v1.2d
\pmbraise@=\dimen123
)
(/opt/local/share/texmf-texlive/tex/latex/amsmath/amsopn.sty
Package: amsopn 1999/12/14 v2.01 operator names
)
\inf@bad=\count112
LaTeX Info: Redefining \frac on input line 210.
\uproot@=\count113
\leftroot@=\count114
LaTeX Info: Redefining \overline on input line 306.
\classnum@=\count115
\DOTSCASE@=\count116
LaTeX Info: Redefining \ldots on input line 378.
LaTeX Info: Redefining \dots on input line 381.
LaTeX Info: Redefining \cdots on input line 466.
\Mathstrutbox@=\box28
\strutbox@=\box29
\big@size=\dimen124
LaTeX Font Info:    Redeclaring font encoding OML on input line 566.
LaTeX Font Info:    Redeclaring font encoding OMS on input line 567.
\macc@depth=\count117
\c@MaxMatrixCols=\count118
\dotsspace@=\muskip11
\c@parentequation=\count119
\dspbrk@lvl=\count120
\tag@help=\toks27
\row@=\count121
\column@=\count122
\maxfields@=\count123
\andhelp@=\toks28
\eqnshift@=\dimen125
\alignsep@=\dimen126
\tagshift@=\dimen127
\tagwidth@=\dimen128
\totwidth@=\dimen129
\lineht@=\dimen130
\@envbody=\toks29
\multlinegap=\skip54
\multlinetaggap=\skip55
\mathdisplay@stack=\toks30
LaTeX Info: Redefining \[ on input line 2665.
LaTeX Info: Redefining \] on input line 2666.
)
(/opt/local/share/texmf-texlive/tex/latex/amsfonts/amssymb.sty
Package: amssymb 2013/01/14 v3.01 AMS font symbols

(/opt/local/share/texmf-texlive/tex/latex/amsfonts/amsfonts.sty
Package: amsfonts 2013/01/14 v3.01 Basic AMSFonts support
\symAMSa=\mathgroup4
\symAMSb=\mathgroup5
LaTeX Font Info:    Overwriting math alphabet `\mathfrak' in version `bold'
(Font)                  U/euf/m/n --> U/euf/b/n on input line 106.
))
(/opt/local/share/texmf-texlive/tex/latex/psnfss/times.sty
Package: times 2005/04/12 PSNFSS-v9.2a (SPQR) 
)
(/opt/local/share/texmf-texlive/tex/latex/psnfss/mathptm.sty
Package: mathptm 2005/04/12 PSNFSS-v9.2a Times w/ Math (SPQR, WaS) 


Package mathptm Warning: This package is to be regarded as obsolete.
(mathptm)                See the PSNFSS documentation.

LaTeX Font Info:    Redeclaring symbol font `operators' on input line 31.
LaTeX Font Info:    Overwriting symbol font `operators' in version `normal'
(Font)                  OT1/cmr/m/n --> OT1/ptmcm/m/n on input line 31.
LaTeX Font Info:    Overwriting symbol font `operators' in version `bold'
(Font)                  OT1/cmr/bx/n --> OT1/ptmcm/m/n on input line 31.
LaTeX Font Info:    Redeclaring symbol font `letters' on input line 32.
LaTeX Font Info:    Overwriting symbol font `letters' in version `normal'
(Font)                  OML/cmm/m/it --> OML/ptmcm/m/it on input line 32.
LaTeX Font Info:    Overwriting symbol font `letters' in version `bold'
(Font)                  OML/cmm/b/it --> OML/ptmcm/m/it on input line 32.
LaTeX Font Info:    Redeclaring symbol font `symbols' on input line 33.
LaTeX Font Info:    Overwriting symbol font `symbols' in version `normal'
(Font)                  OMS/cmsy/m/n --> OMS/pzccm/m/n on input line 33.
LaTeX Font Info:    Overwriting symbol font `symbols' in version `bold'
(Font)                  OMS/cmsy/b/n --> OMS/pzccm/m/n on input line 33.
LaTeX Font Info:    Redeclaring symbol font `largesymbols' on input line 34.
LaTeX Font Info:    Overwriting symbol font `largesymbols' in version `normal'
(Font)                  OMX/cmex/m/n --> OMX/psycm/m/n on input line 34.
LaTeX Font Info:    Overwriting symbol font `largesymbols' in version `bold'
(Font)                  OMX/cmex/m/n --> OMX/psycm/m/n on input line 34.
\symbold=\mathgroup6
\symitalic=\mathgroup7
LaTeX Font Info:    Redeclaring math alphabet \mathbf on input line 37.
LaTeX Font Info:    Overwriting math alphabet `\mathbf' in version `normal'
(Font)                  OT1/cmr/bx/n --> OT1/ptm/bx/n on input line 37.
LaTeX Font Info:    Overwriting math alphabet `\mathbf' in version `bold'
(Font)                  OT1/cmr/bx/n --> OT1/ptm/bx/n on input line 37.
LaTeX Font Info:    Redeclaring math alphabet \mathit on input line 38.
LaTeX Font Info:    Overwriting math alphabet `\mathit' in version `normal'
(Font)                  OT1/cmr/m/it --> OT1/ptm/m/it on input line 38.
LaTeX Font Info:    Overwriting math alphabet `\mathit' in version `bold'
(Font)                  OT1/cmr/bx/it --> OT1/ptm/m/it on input line 38.
) (/opt/local/share/texmf-texlive/tex/latex/tools/tabularx.sty
Package: tabularx 1999/01/07 v2.07 `tabularx' package (DPC)

(/opt/local/share/texmf-texlive/tex/latex/tools/array.sty
Package: array 2008/09/09 v2.4c Tabular extension package (FMi)
\col@sep=\dimen131
\extrarowheight=\dimen132
\NC@list=\toks31
\extratabsurround=\skip56
\backup@length=\skip57
)
\TX@col@width=\dimen133
\TX@old@table=\dimen134
\TX@old@col=\dimen135
\TX@target=\dimen136
\TX@delta=\dimen137
\TX@cols=\count124
\TX@ftn=\toks32
)
(/opt/local/share/texmf-texlive/tex/latex/tools/longtable.sty
Package: longtable 2004/02/01 v4.11 Multi-page Table package (DPC)
\LTleft=\skip58
\LTright=\skip59
\LTpre=\skip60
\LTpost=\skip61
\LTchunksize=\count125
\LTcapwidth=\dimen138
\LT@head=\box30
\LT@firsthead=\box31
\LT@foot=\box32
\LT@lastfoot=\box33
\LT@cols=\count126
\LT@rows=\count127
\c@LT@tables=\count128
\c@LT@chunks=\count129
\LT@p@ftn=\toks33
)
(/opt/local/share/texmf-texlive/tex/latex/multirow/multirow.sty
\bigstrutjot=\dimen139
)
(/opt/local/share/texmf-texlive/tex/latex/tools/multicol.sty
Package: multicol 2011/06/27 v1.7a multicolumn formatting (FMi)
\c@tracingmulticols=\count130
\mult@box=\box34
\multicol@leftmargin=\dimen140
\c@unbalance=\count131
\c@collectmore=\count132
\doublecol@number=\count133
\multicoltolerance=\count134
\multicolpretolerance=\count135
\full@width=\dimen141
\page@free=\dimen142
\premulticols=\dimen143
\postmulticols=\dimen144
\multicolsep=\skip62
\multicolbaselineskip=\skip63
\partial@page=\box35
\last@line=\box36
\mult@rightbox=\box37
\mult@grightbox=\box38
\mult@gfirstbox=\box39
\mult@firstbox=\box40
\@tempa=\box41
\@tempa=\box42
\@tempa=\box43
\@tempa=\box44
\@tempa=\box45
\@tempa=\box46
\@tempa=\box47
\@tempa=\box48
\@tempa=\box49
\@tempa=\box50
\@tempa=\box51
\@tempa=\box52
\@tempa=\box53
\@tempa=\box54
\@tempa=\box55
\@tempa=\box56
\@tempa=\box57
\c@columnbadness=\count136
\c@finalcolumnbadness=\count137
\last@try=\dimen145
\multicolovershoot=\dimen146
\multicolundershoot=\dimen147
\mult@nat@firstbox=\box58
\colbreak@box=\box59
\multicol@sort@counter=\count138
)
(/opt/local/share/texmf-texlive/tex/latex/achemso/achemso.sty
Package: achemso 2013/04/13 v3.7g Support for ACS journals
Package achemso Info: You have already loaded the `achemso' class:
(achemso)             loading the package will abort on input line 31.
)
(/opt/local/share/texmf-texlive/tex/latex/mhchem/mhchem.sty
Package: mhchem 2011/06/03 v3.11 for typesetting chemical formulae

(/opt/local/share/texmf-texlive/tex/latex/base/ifthen.sty
Package: ifthen 2001/05/26 v1.1c Standard LaTeX ifthen package (DPC)
)
(/opt/local/share/texmf-texlive/tex/latex/tools/calc.sty
Package: calc 2007/08/22 v4.3 Infix arithmetic (KKT,FJ)
\calc@Acount=\count139
\calc@Bcount=\count140
\calc@Adimen=\dimen148
\calc@Bdimen=\dimen149
\calc@Askip=\skip64
\calc@Bskip=\skip65
LaTeX Info: Redefining \setlength on input line 76.
LaTeX Info: Redefining \addtolength on input line 77.
\calc@Ccount=\count141
\calc@Cskip=\skip66
)
(/opt/local/share/texmf-texlive/tex/latex/oberdiek/twoopt.sty
Package: twoopt 2008/08/11 v1.5 Definitions with two optional arguments (HO)
)
\tok@mhchem@ce@iii=\toks34
\mhchem@arrowminlength=\skip67
\mhchem@arrows@box=\box60
\mhchem@arrowlength@pgf=\skip68
\mhchem@arrowminlength@pgf=\skip69
\mhchem@bondwidth=\skip70
\mhchem@bondheight=\skip71
\mhchem@smallbondwidth@tmpA=\skip72
\mhchem@smallbondwidth@tmpB=\skip73
\mhchem@smallbondwidth=\skip74
\mhchem@cf@result=\toks35
\mhchem@cf@element=\toks36
\mhchem@cf@amount=\toks37
\mhchem@cf@sup=\toks38
\mhchem@cf@presub=\toks39
\mhchem@cf@presup=\toks40
\mhchem@cf@replaceMath@result=\toks41
\mhchem@cf@replaceMathMinusDot@result=\toks42
\mhchem@prepostscript@tmp@i=\skip75
\mhchem@prepostscript@tmp@ii=\skip76
\mhchem@mathbox@tmp@i=\skip77
\mhchem@mathbox@tmp@ii=\skip78
\mhchem@minispace@tmp=\skip79
\mhchem@option@minussidebearingleft=\skip80
\mhchem@option@minussidebearingright=\skip81
)
(./nonperiodicVSS.aux

LaTeX Warning: Label `eq:bc' multiply defined.


LaTeX Warning: Label `eq:bh' multiply defined.


LaTeX Warning: Label `eq:Kc' multiply defined.


LaTeX Warning: Label `eq:Kh' multiply defined.


LaTeX Warning: Label `table:waterconductivity' multiply defined.


LaTeX Warning: Label `fig:VSS' multiply defined.

)
\openout1 = `nonperiodicVSS.aux'.

LaTeX Font Info:    Checking defaults for OML/cmm/m/it on input line 48.
LaTeX Font Info:    ... okay on input line 48.
LaTeX Font Info:    Checking defaults for T1/cmr/m/n on input line 48.
LaTeX Font Info:    ... okay on input line 48.
LaTeX Font Info:    Checking defaults for OT1/cmr/m/n on input line 48.
LaTeX Font Info:    ... okay on input line 48.
LaTeX Font Info:    Checking defaults for OMS/cmsy/m/n on input line 48.
LaTeX Font Info:    ... okay on input line 48.
LaTeX Font Info:    Checking defaults for OMX/cmex/m/n on input line 48.
LaTeX Font Info:    ... okay on input line 48.
LaTeX Font Info:    Checking defaults for U/cmr/m/n on input line 48.
LaTeX Font Info:    ... okay on input line 48.
LaTeX Font Info:    Try loading font information for T1+ptm on input line 48.
 (/opt/local/share/texmf-texlive/tex/latex/psnfss/t1ptm.fd
File: t1ptm.fd 2001/06/04 font definitions for T1/ptm.
)
\openout3 = `acs-nonperiodicVSS.bib'.


*geometry* driver: auto-detecting
*geometry* detected driver: pdftex
*geometry* verbose mode - [ preamble ] result:
* driver: pdftex
* paper: <default>
* layout: <same size as paper>
* layoutoffset:(h,v)=(0.0pt,0.0pt)
* modes: 
* h-part:(L,W,R)=(72.2698pt, 469.75539pt, 72.2698pt)
* v-part:(T,H,B)=(72.2698pt, 650.43037pt, 72.2698pt)
* \paperwidth=614.295pt
* \paperheight=794.96999pt
* \textwidth=469.75499pt
* \textheight=650.43pt
* \oddsidemargin=0.0pt
* \evensidemargin=0.0pt
* \topmargin=-21.0pt
* \headheight=12.0pt
* \headsep=10.0pt
* \topskip=12.0pt
* \footskip=30.0pt
* \marginparwidth=44.0pt
* \marginparsep=10.0pt
* \columnsep=10.0pt
* \skip\footins=10.8pt plus 4.0pt minus 2.0pt
* \hoffset=0.0pt
* \voffset=0.0pt
* \mag=1000
* \@twocolumnfalse
* \@twosidefalse
* \@mparswitchfalse
* \@reversemarginfalse
* (1in=72.27pt=25.4mm, 1cm=28.453pt)

Package caption Info: Begin \AtBeginDocument code.
Package caption Info: float package is loaded.
Package caption Info: longtable package is loaded.
(/opt/local/share/texmf-texlive/tex/latex/caption/ltcaption.sty
Package: ltcaption 2013/02/03 v1.3-62 longtable captions (AR)
)
Package caption Info: End \AtBeginDocument code.

(/opt/local/share/texmf-texlive/tex/context/base/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
\scratchcounter=\count142
\scratchdimen=\dimen150
\scratchbox=\box61
\nofMPsegments=\count143
\nofMParguments=\count144
\everyMPshowfont=\toks43
\MPscratchCnt=\count145
\MPscratchDim=\dimen151
\MPnumerator=\count146
\makeMPintoPDFobject=\count147
\everyMPtoPDFconversion=\toks44
) (/opt/local/share/texmf-texlive/tex/generic/oberdiek/pdftexcmds.sty
Package: pdftexcmds 2011/11/29 v0.20 Utility functions of pdfTeX for LuaTeX (HO
)

(/opt/local/share/texmf-texlive/tex/generic/oberdiek/ifluatex.sty
Package: ifluatex 2010/03/01 v1.3 Provides the ifluatex switch (HO)
Package ifluatex Info: LuaTeX not detected.
)
Package pdftexcmds Info: LuaTeX not detected.
Package pdftexcmds Info: \pdf@primitive is available.
Package pdftexcmds Info: \pdf@ifprimitive is available.
Package pdftexcmds Info: \pdfdraftmode found.
)
(/opt/local/share/texmf-texlive/tex/latex/oberdiek/epstopdf-base.sty
Package: epstopdf-base 2010/02/09 v2.5 Base part for package epstopdf

(/opt/local/share/texmf-texlive/tex/latex/oberdiek/grfext.sty
Package: grfext 2010/08/19 v1.1 Manage graphics extensions (HO)

(/opt/local/share/texmf-texlive/tex/generic/oberdiek/kvdefinekeys.sty
Package: kvdefinekeys 2011/04/07 v1.3 Define keys (HO)
))
(/opt/local/share/texmf-texlive/tex/latex/oberdiek/kvoptions.sty
Package: kvoptions 2011/06/30 v3.11 Key value format for package options (HO)

(/opt/local/share/texmf-texlive/tex/generic/oberdiek/kvsetkeys.sty
Package: kvsetkeys 2012/04/25 v1.16 Key value parser (HO)

(/opt/local/share/texmf-texlive/tex/generic/oberdiek/etexcmds.sty
Package: etexcmds 2011/02/16 v1.5 Avoid name clashes with e-TeX commands (HO)
Package etexcmds Info: Could not find \expanded.
(etexcmds)             That can mean that you are not using pdfTeX 1.50 or
(etexcmds)             that some package has redefined \expanded.
(etexcmds)             In the latter case, load this package earlier.
)))
Package grfext Info: Graphics extension search list:
(grfext)             [.png,.pdf,.jpg,.mps,.jpeg,.jbig2,.jb2,.PNG,.PDF,.JPG,.JPE
G,.JBIG2,.JB2,.eps]
(grfext)             \AppendGraphicsExtensions on input line 452.

(/opt/local/share/texmf-texlive/tex/latex/latexconfig/epstopdf-sys.cfg
File: epstopdf-sys.cfg 2010/07/13 v1.3 Configuration of (r)epstopdf for TeX Liv
e
))
LaTeX Font Info:    Font shape `T1/ptm/bx/n' in size <12> not available
(Font)              Font shape `T1/ptm/b/n' tried instead on input line 48.
LaTeX Font Info:    Try loading font information for T1+phv on input line 48.

(/opt/local/share/texmf-texlive/tex/latex/psnfss/t1phv.fd
File: t1phv.fd 2001/06/04 scalable font definitions for T1/phv.
)
LaTeX Font Info:    Font shape `T1/phv/bx/n' in size <12> not available
(Font)              Font shape `T1/phv/b/n' tried instead on input line 48.
LaTeX Font Info:    Font shape `T1/phv/b/n' will be
(Font)              scaled to size 10.79993pt on input line 48.
LaTeX Font Info:    Font shape `T1/phv/bx/n' in size <20.74> not available
(Font)              Font shape `T1/phv/b/n' tried instead on input line 48.
LaTeX Font Info:    Font shape `T1/phv/b/n' will be
(Font)              scaled to size 18.66588pt on input line 48.
LaTeX Font Info:    Font shape `T1/phv/m/n' will be
(Font)              scaled to size 12.9599pt on input line 48.
LaTeX Font Info:    Try loading font information for OT1+ptmcm on input line 48
.

(/opt/local/share/texmf-texlive/tex/latex/psnfss/ot1ptmcm.fd
File: ot1ptmcm.fd 2000/01/03 Fontinst v1.801 font definitions for OT1/ptmcm.
)
LaTeX Font Info:    Try loading font information for OML+ptmcm on input line 48
.

(/opt/local/share/texmf-texlive/tex/latex/psnfss/omlptmcm.fd
File: omlptmcm.fd 2000/01/03 Fontinst v1.801 font definitions for OML/ptmcm.
)
LaTeX Font Info:    Try loading font information for OMS+pzccm on input line 48
.

(/opt/local/share/texmf-texlive/tex/latex/psnfss/omspzccm.fd
File: omspzccm.fd 2000/01/03 Fontinst v1.801 font definitions for OMS/pzccm.
)
LaTeX Font Info:    Try loading font information for OMX+psycm on input line 48
.

(/opt/local/share/texmf-texlive/tex/latex/psnfss/omxpsycm.fd
File: omxpsycm.fd 2000/01/03 Fontinst v1.801 font definitions for OMX/psycm.
)
LaTeX Font Info:    Try loading font information for U+msa on input line 48.

(/opt/local/share/texmf-texlive/tex/latex/amsfonts/umsa.fd
File: umsa.fd 2013/01/14 v3.01 AMS symbols A
)
LaTeX Font Info:    Try loading font information for U+msb on input line 48.

(/opt/local/share/texmf-texlive/tex/latex/amsfonts/umsb.fd
File: umsb.fd 2013/01/14 v3.01 AMS symbols B
)
LaTeX Font Info:    Try loading font information for OT1+ptm on input line 48.

(/opt/local/share/texmf-texlive/tex/latex/psnfss/ot1ptm.fd
File: ot1ptm.fd 2001/06/04 font definitions for OT1/ptm.
)
LaTeX Font Info:    Font shape `OT1/ptm/bx/n' in size <14.4> not available
(Font)              Font shape `OT1/ptm/b/n' tried instead on input line 48.
LaTeX Font Info:    Font shape `OT1/ptm/bx/n' in size <10.95> not available
(Font)              Font shape `OT1/ptm/b/n' tried instead on input line 48.
LaTeX Font Info:    Font shape `OT1/ptm/bx/n' in size <8> not available
(Font)              Font shape `OT1/ptm/b/n' tried instead on input line 48.
LaTeX Font Info:    Font shape `T1/phv/m/n' will be
(Font)              scaled to size 9.85492pt on input line 48.
LaTeX Font Info:    Font shape `OT1/ptm/bx/n' in size <6> not available
(Font)              Font shape `OT1/ptm/b/n' tried instead on input line 48.
LaTeX Font Info:    Font shape `T1/phv/m/n' will be
(Font)              scaled to size 10.79993pt on input line 48.
LaTeX Font Info:    Font shape `OT1/ptm/bx/n' in size <12> not available
(Font)              Font shape `OT1/ptm/b/n' tried instead on input line 48.
LaTeX Font Info:    Font shape `OT1/ptm/bx/n' in size <9> not available
(Font)              Font shape `OT1/ptm/b/n' tried instead on input line 48.
LaTeX Font Info:    Font shape `OT1/ptm/bx/n' in size <7> not available
(Font)              Font shape `OT1/ptm/b/n' tried instead on input line 48.
LaTeX Font Info:    Font shape `OT1/ptm/bx/n' in size <10> not available
(Font)              Font shape `OT1/ptm/b/n' tried instead on input line 48.
LaTeX Font Info:    Font shape `OT1/ptm/bx/n' in size <7.4> not available
(Font)              Font shape `OT1/ptm/b/n' tried instead on input line 48.
LaTeX Font Info:    Calculating math sizes for size <7.4> on input line 48.
LaTeX Font Info:    Font shape `OT1/ptm/bx/n' in size <5.17996> not available
(Font)              Font shape `OT1/ptm/b/n' tried instead on input line 48.
LaTeX Font Info:    Font shape `OT1/ptm/bx/n' in size <3.7> not available
(Font)              Font shape `OT1/ptm/b/n' tried instead on input line 48.
LaTeX Font Info:    Font shape `T1/ptm/bx/n' in size <10.95> not available
(Font)              Font shape `T1/ptm/b/n' tried instead on input line 67.
 [1

{/opt/local/var/db/texmf/fonts/map/pdftex/updmap/pdftex.map}]
LaTeX Font Info:    Font shape `T1/ptm/bx/n' in size <17.28> not available
(Font)              Font shape `T1/ptm/b/n' tried instead on input line 80.
LaTeX Font Info:    Font shape `T1/ptm/bx/n' in size <9> not available
(Font)              Font shape `T1/ptm/b/n' tried instead on input line 84.


Package natbib Warning: Citation `ASHURST:1975tg' on page 2 undefined on input 
line 84.


Package natbib Warning: Citation `Evans:1982zk' on page 2 undefined on input li
ne 84.


Package natbib Warning: Citation `ERPENBECK:1984sp' on page 2 undefined on inpu
t line 84.


Package natbib Warning: Citation `MAGINN:1993hc' on page 2 undefined on input l
ine 84.


Package natbib Warning: Citation `Berthier:2002ij' on page 2 undefined on input
 line 84.


Package natbib Warning: Citation `Evans:2002ai' on page 2 undefined on input li
ne 84.


Package natbib Warning: Citation `Schelling:2002dp' on page 2 undefined on inpu
t line 84.


Package natbib Warning: Citation `PhysRevA.34.1449' on page 2 undefined on inpu
t line 84.


Package natbib Warning: Citation `JiangHao_jp802942v' on page 2 undefined on in
put line 84.

\openout4 = `nonperiodicVSS.fff'.

(nonperiodicVSS.fff)

Package natbib Warning: Citation `MullerPlathe:1997xw' on page 2 undefined on i
nput line 104.


Package natbib Warning: Citation `ISI:000080382700030' on page 2 undefined on i
nput line 104.


Package natbib Warning: Citation `Kuang:2010uq' on page 2 undefined on input li
ne 104.


Package natbib Warning: Citation `MullerPlathe:1997xw' on page 2 undefined on i
nput line 117.


Package natbib Warning: Citation `ISI:000080382700030' on page 2 undefined on i
nput line 117.


Package natbib Warning: Citation `Maginn:2010' on page 2 undefined on input lin
e 117.


Package natbib Warning: Citation `garde:nl2005' on page 2 undefined on input li
ne 119.


Package natbib Warning: Citation `garde:PhysRevLett2009' on page 2 undefined on
 input line 119.


Package natbib Warning: Citation `kuang:AuThl' on page 2 undefined on input lin
e 119.


Package natbib Warning: Citation `2012MolPh.110..691K' on page 2 undefined on i
nput line 127.

[2] [3]
LaTeX Font Info:    Font shape `T1/ptm/bx/n' in size <14.4> not available
(Font)              Font shape `T1/ptm/b/n' tried instead on input line 218.


Package natbib Warning: Citation `Vardeman2011' on page 4 undefined on input li
ne 220.


Overfull \hbox (0.2034pt too wide) in paragraph at lines 220--222
\T1/ptm/m/n/12 We have run all tests us-ing the Langevin Hull non-pe-ri-odic si
m-u-la-tion method-ol-ogy.$[]$ The Langevin
 []

[4]

Package natbib Warning: Citation `Kuang2012' on page 5 undefined on input line 
230.


Package natbib Warning: Citation `openmd' on page 5 undefined on input line 235
.

[5]

Package natbib Warning: Citation `Bedrov:2000' on page 6 undefined on input lin
e 298.


Package natbib Warning: Citation `Kuang2010' on page 6 undefined on input line 
298.


Package natbib Warning: Citation `PhysRevB.59.3527' on page 6 undefined on inpu
t line 300.

[6]

Package natbib Warning: Citation `TraPPE-UA.alkanes' on page 7 undefined on inp
ut line 302.


Package natbib Warning: Citation `kuang:AuThl' on page 7 undefined on input lin
e 308.


Package natbib Warning: Citation `Kuang2012' on page 7 undefined on input line 
308.


Package natbib Warning: Citation `vlugt:cpc2007154' on page 7 undefined on inpu
t line 313.


Package natbib Warning: Citation `hautman:4994' on page 7 undefined on input li
ne 313.

[7] [8]

Package natbib Warning: Citation `Kuang2010' on page 9 undefined on input line 
392.

[9] [10] [11] [12] (./nonperiodicVSS.bbl

Package natbib Warning: Empty `thebibliography' environment on input line 22.

! Undefined control sequence.
<write> ...subitem}{\@mcitecorrectmaxwidthsubitem 
                                                  }
l.22 \end{mcitethebibliography}
                               
? 
! Undefined control sequence.
\@mciteMaxWidthAuxWrite ... \mcitemaxwidthsubitem 
                                                  =\@mcitecorrectmaxwidthsub...
l.22 \end{mcitethebibliography}
                               
? 
! Missing number, treated as zero.
<to be read again> 
                   =
l.22 \end{mcitethebibliography}
                               
? 
! Undefined control sequence.
\@mciteMaxWidthAuxWrite ...correctmaxwidthsubitem 
                                                  \relax \else \@latex@warni...
l.22 \end{mcitethebibliography}
                               
? 
! Missing number, treated as zero.
<to be read again> 
                   \relax 
l.22 \end{mcitethebibliography}
                               
? 
)

Package natbib Warning: There were undefined citations.

AED endfloat: Processing end Figures and Tables [13] (./nonperiodicVSS.lof)
\tf@lof=\write6
\openout6 = `nonperiodicVSS.lof'.


[14


] (./nonperiodicVSS.fff <VSS2.pdf, id=57, 1300.86pt x 578.16pt>
File: VSS2.pdf Graphic file (type pdf)

<use VSS2.pdf>
Package pdftex.def Info: VSS2.pdf used on input line 2.
(pdftex.def)             Requested size: 469.75499pt x 208.78145pt.
 [15

 <./VSS2.pdf>]
<figures/VSS.pdf, id=270, 1295.91269pt x 570.40422pt>
File: figures/VSS.pdf Graphic file (type pdf)
 <use figures/VSS.pdf>
Package pdftex.def Info: figures/VSS.pdf used on input line 13.
(pdftex.def)             Requested size: 505.89pt x 222.66563pt.

Overfull \hbox (36.13501pt too wide) in paragraph at lines 13--14
 [] 
 []

[16

 <./figures/VSS.pdf>]) (./nonperiodicVSS.aux)

LaTeX Warning: There were multiply-defined labels.

 ) 
Here is how much of TeX's memory you used:
 6710 strings out of 495035
 99779 string characters out of 6181624
 175496 words of memory out of 5000000
 9703 multiletter control sequences out of 15000+600000
 103199 words of font info for 168 fonts, out of 8000000 for 9000
 14 hyphenation exceptions out of 8191
 60i,19n,94p,1133b,533s stack positions out of 5000i,500n,10000p,200000b,80000s
{/opt/local/share/texmf-texlive/fonts/enc/dvips/base/8r.enc}</opt/local/share
/texmf-texlive/fonts/type1/public/amsfonts/cm/cmex10.pfb></opt/local/share/texm
f-texlive/fonts/type1/public/amsfonts/cm/cmmi10.pfb></opt/local/share/texmf-tex
live/fonts/type1/public/amsfonts/cm/cmr10.pfb></opt/local/share/texmf-texlive/f
onts/type1/public/amsfonts/cm/cmsl10.pfb></opt/local/share/texmf-texlive/fonts/
type1/public/amsfonts/cm/cmsy10.pfb></opt/local/share/texmf-texlive/fonts/type1
/urw/helvetic/uhvb8a.pfb></opt/local/share/texmf-texlive/fonts/type1/urw/helvet
ic/uhvr8a.pfb></opt/local/share/texmf-texlive/fonts/type1/urw/symbol/usyr.pfb><
/opt/local/share/texmf-texlive/fonts/type1/urw/times/utmb8a.pfb></opt/local/sha
re/texmf-texlive/fonts/type1/urw/times/utmr8a.pfb></opt/local/share/texmf-texli
ve/fonts/type1/urw/times/utmri8a.pfb>
Output written on nonperiodicVSS.pdf (16 pages, 2405388 bytes).
PDF statistics:
 513 PDF objects out of 1000 (max. 8388607)
 321 compressed objects within 4 object streams
 0 named destinations out of 1000 (max. 500000)
 11 words of extra memory for PDF output out of 10000 (max. 10000000)

Revision:	3977
Committed:	Fri Nov 22 22:27:38 2013 UTC (10 years, 9 months ago) by gezelter
File size:	31899 byte(s)
Log Message:	Added a bunch of stuff from the NSF proposal to the MS, still missing the refs.