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# Line 83 | Line 83 | system,\cite{ASHURST:1975tg,Evans:1982zk,ERPENBECK:198
83   \section{Introduction}
84  
85   Non-equilibrium Molecular Dynamics (NEMD) methods impose a temperature or velocity {\it gradient} on a
86 < system,\cite{ASHURST:1975tg,Evans:1982zk,ERPENBECK:1984sp,MAGINN:1993hc,Berthier:2002ij,Evans:2002ai,Schelling:2
87 < 002dp,PhysRevA.34.1449,JiangHao_jp802942v} and use linear response theory to connect the resulting thermal or
88 < momentum flux to transport coefficients of bulk materials. However, for heterogeneous systems, such as phase
86 > system,\cite{ASHURST:1975tg,Evans:1982zk,ERPENBECK:1984sp,MAGINN:1993hc,Berthier:2002ij,Evans:2002ai,Schelling:2002dp,PhysRevA.34.1449,JiangHao_jp802942v} and use linear response theory to connect the resulting thermal or
87 > momentum flux to transport coefficients of bulk materials.  However, for heterogeneous systems, such as phase
88   boundaries or interfaces, it is often unclear what shape of gradient should be imposed at the boundary between
89   materials.
90  
# Line 100 | Line 99 | interfaces.\cite{garde:nl2005,garde:PhysRevLett2009,ku
99   properties, and they have become widely used to compute thermal and mechanical transport in both homogeneous
100   liquids and solids~\cite{MullerPlathe:1997xw,ISI:000080382700030,Maginn:2010} as well as heterogeneous
101   interfaces.\cite{garde:nl2005,garde:PhysRevLett2009,kuang:AuThl}
102 +
103 + The strengths of specific algorithms for imposing the flux between two
104 + different slabs of the simulation cell has been the subject of some
105 + renewed interest.  The original RNEMD approach used kinetic energy or
106 + momentum exchange between particles in the two slabs, either through
107 + direct swapping of momentum vectors or via virtual elastic collisions
108 + between atoms in the two regions.  There have been recent
109 + methodological advances which involve scaling all particle velocities
110 + in both slabs.  Constraint equations are simultaneously imposed to
111 + require the simulation to conserve both total energy and total linear
112 + momentum.  The most recent and simplest of the velocity scaling
113 + approaches allows for simultaneous shearing (to provide viscosity
114 + estimates) as well as scaling (to provide information about thermal
115 + conductivity).
116 +
117 + To date, however, the RNEMD methods have only been usable in periodic
118 + simulation cells where the exchange regions are physically separated
119 + along one of the axes of the simulation cell.   This limits the
120 + applicability to infinite planar interfaces.
121  
122 + In order to model steady-state non-equilibrium distributions for
123 + curved surfaces (e.g. hot nanoparticles in contact with colder
124 + solvent), or for regions that are not planar slabs, the method
125 + requires some generalization for non-parallel exchange regions.  In
126 + the following sections, we present the Velocity Shearing and Scaling
127 + (VSS) RNEMD algorithm which has been explicitly designed for
128 + non-periodic simulations, and use the method to compute some thermal
129 + transport and solid-liquid friction at the surfaces of spherical and
130 + ellipsoidal nanoparticles, and discuss how the method can be extended
131 + to provide other kinds of non-equilibrium fluxes.
132  
133   %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
134   % **METHODOLOGY**
135   %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
136   \section{Velocity Shearing and Scaling (VSS) for non-periodic systems}
137  
138 < The periodic VSS-RNEMD approach uses a series of simultaneous velocity shearing and scaling exchanges between the two
139 < slabs.\cite{Kuang2012} This method imposes energy and momentum conservation constraints while simultaneously
140 < creating a desired flux between the two slabs. These constraints ensure that all configurations are sampled
141 < from the same microcanonical (NVE) ensemble.
138 > The periodic VSS-RNEMD approach uses a series of simultaneous velocity
139 > shearing and scaling exchanges between the two slabs.\cite{Kuang2012}
140 > This method imposes energy and momentum conservation constraints while
141 > simultaneously creating a desired flux between the two slabs. These
142 > constraints ensure that all configurations are sampled from the same
143 > microcanonical (NVE) ensemble.
144  
145   \begin{figure}
146   \includegraphics[width=\linewidth]{figures/npVSS}

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