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OOPSE docs for version 4

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1 %% This BibTeX bibliography file was created using BibDesk.
2 %% http://bibdesk.sourceforge.net/
3
4
5 %% Created for Dan Gezelter at 2008-05-16 10:19:07 -0400
6
7
8 %% Saved with string encoding Western (ASCII)
9
10
11 @string{acp = {Adv. Chem. Phys.}}
12
13 @string{bj = {Biophys. J.}}
14
15 @string{cp = {Chem. Phys.}}
16
17 @string{cpc = {Comp. Phys. Comm.}}
18
19 @string{cpl = {Chem. Phys. Lett.}}
20
21 @string{jacs = {J. Am. Chem. Soc.}}
22
23 @string{jcc = {J. Comp. Chem.}}
24
25 @string{jcp = {J. Chem. Phys.}}
26
27 @string{jml = {J. Mol. Liq.}}
28
29 @string{jpc = {J. Phys. Chem.}}
30
31 @string{jpca = {J. Phys. Chem. A}}
32
33 @string{jpcb = {J. Phys. Chem. B}}
34
35 @string{mp = {Mol. Phys.}}
36
37 @string{pnas = {Proc. Natl. Acad. Sci. USA}}
38
39 @string{pra = {Phys. Rev. A}}
40
41 @string{prb = {Phys. Rev. B}}
42
43 @string{pre = {Phys. Rev. E}}
44
45 @string{prl = {Phys. Rev. Lett.}}
46
47 @string{rmp = {Rev. Mod. Phys.}}
48
49
50 @article{Fennell06,
51 Author = {C.~J. Fennell and J.~D. Gezelter},
52 Date-Added = {2008-05-16 10:19:01 -0400},
53 Date-Modified = {2008-05-16 10:19:01 -0400},
54 Doi = {10.1063/1.2206581},
55 Journal = jcp,
56 Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/MyPapers/Fennell_PairwiseSummationMethods_06.pdf},
57 Number = {23},
58 Pages = {234104(12)},
59 Rating = {5},
60 Read = {Yes},
61 Title = {Is the \uppercase{E}wald summation still necessary? \uppercase{P}airwise alternatives to the accepted standard for long-range electrostatics},
62 Volume = {124},
63 Year = {2006},
64 Bdsk-Url-1 = {http://dx.doi.org/10.1063/1.2206581}}
65
66 @article{Heyes81,
67 Author = {D.~M. Heyes},
68 Date-Added = {2008-05-16 10:18:50 -0400},
69 Date-Modified = {2008-05-16 10:18:50 -0400},
70 Journal = jcp,
71 Keywords = {Empty Keywords},
72 Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Heyes_CoulombChargeSpreading_81.pdf},
73 Number = {3},
74 Pages = {1924-1929},
75 Title = {Electrostatic potentials and fields in infinite point charge lattices},
76 Volume = {74},
77 Year = {1981}}
78
79 @article{Jones56,
80 Author = {R.~E. Jones and D.~H. Templeton},
81 Date-Added = {2008-05-16 10:18:41 -0400},
82 Date-Modified = {2008-05-16 10:18:41 -0400},
83 Journal = jcp,
84 Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/TheoryTechniques/Ewald/Jones_ChargeShapeFunctions_56.pdf},
85 Number = {5},
86 Pages = {1062-1063},
87 Title = {Optimum Atomic Shape for \uppercase{B}ertaut Series},
88 Volume = {25},
89 Year = {1956}}
90
91 @book{Allen87,
92 Address = {New York},
93 Author = {M.~P. Allen and D.~J. Tildesley},
94 Date-Added = {2008-05-16 10:18:32 -0400},
95 Date-Modified = {2008-05-16 10:18:32 -0400},
96 Publisher = {Oxford University Press},
97 Title = {Computer Simulations of Liquids},
98 Year = 1987}
99
100 @article{Wolf99,
101 Author = {D. Wolf and P. Keblinski and S.~R. Phillpot and J. Eggebrecht},
102 Date-Added = {2008-05-16 10:18:22 -0400},
103 Date-Modified = {2008-05-16 10:18:22 -0400},
104 Journal = jcp,
105 Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/Wolf_Potential/Wolf_electroCorr_99.pdf},
106 Number = {17},
107 Pages = {8254-8282},
108 Rating = {0},
109 Read = {No},
110 Title = {Exact method for the simulation of Coulombic systems by spherically truncated, pairwise $r^{-1}$ summation},
111 Volume = {110},
112 Year = {1999}}
113
114 @book{Berne90,
115 Address = {Malabar, Florida},
116 Author = {B.~J. Berne and R. Pecora},
117 Publisher = {Robert E. Krieger Publishing Company, Inc.},
118 Title = {Dynamic Light Scattering},
119 Year = 1990}
120
121 @article{Evans77,
122 Author = {D.~J. Evans},
123 Journal = {Mol. Phys.},
124 Pages = {317-325},
125 Title = {On the representation of orientation space},
126 Volume = 34,
127 Year = 1977}
128
129 @article{Tuckerman92,
130 Author = {M. Tuckerman and B.~J. Berne and G.~J. Martyna},
131 Journal = jcp,
132 Pages = {1990-2001},
133 Title = {Reversible multiple time scale molecular dynamics},
134 Volume = 97,
135 Year = 1992}
136
137 @book{Hansen86,
138 Address = {London},
139 Author = {J.~P. Hansen and I.~R. McDonald},
140 Chapter = 7,
141 Pages = {199-206},
142 Publisher = {Academic Press},
143 Title = {Theory of Simple Liquids},
144 Year = 1986}
145
146 @article{Angelani98,
147 Author = {L. Angelani and G. Parisi and G. Ruocco and G. Viliani},
148 Journal = prl,
149 Number = 21,
150 Pages = {4648-4651},
151 Title = {Connected Network of Minima as a Model Glass: Long Time Dynamics},
152 Volume = 81,
153 Year = 1998}
154
155 @article{Stillinger82,
156 Author = {F.~H. Stillinger and T.~A. Weber},
157 Journal = pra,
158 Number = 2,
159 Pages = {978-989},
160 Title = {Hidden structure in liquids},
161 Volume = 25,
162 Year = 1982}
163
164 @article{Stillinger83,
165 Author = {F.~H. Stillinger and T.~A. Weber},
166 Journal = pra,
167 Number = 4,
168 Pages = {2408-2416},
169 Title = {Dynamics of structural transitions in liquids},
170 Volume = 28,
171 Year = 1983}
172
173 @article{Weber84,
174 Author = {T.~A. Weber and F.~H. Stillinger},
175 Journal = jcp,
176 Number = 6,
177 Pages = {2742-2746},
178 Title = {The effect of density on the inherent structure in liquids},
179 Volume = 80,
180 Year = 1984}
181
182 @article{Stillinger85,
183 Author = {F.~H. Stillinger and T.~A. Weber},
184 Journal = jcp,
185 Number = 9,
186 Pages = {4767-4775},
187 Title = {Inherent structure theory of liquids in the hard-sphere limit},
188 Volume = 83,
189 Year = 1985}
190
191 @article{Stillinger98,
192 Author = {S. Sastry and P.~G. Debenedetti and F.~H. Stillinger},
193 Journal = {Nature},
194 Pages = {554-557},
195 Title = {Signatures of distinct dynamical regimes in the energy landscape of a glass-forming liquid},
196 Volume = 393,
197 Year = 1998}
198
199 @article{Parkhurst75a,
200 Author = {H.~J. {Parkhurst, Jr.} and J. Jonas},
201 Journal = jcp,
202 Number = 6,
203 Pages = {2698-2704},
204 Title = {Dense liquids. I. The effect of density and temperature on viscosity of tetramethylsilane and benzene-$\mbox{D}_6$},
205 Volume = 63,
206 Year = 1975}
207
208 @article{Parkhurst75b,
209 Author = {H.~J. {Parkhurst, Jr.} and J. Jonas},
210 Journal = jcp,
211 Number = 6,
212 Pages = {2705-2709},
213 Title = {Dense liquids. II. The effect of density and temperature on viscosity of tetramethylsilane and benzene },
214 Volume = 63,
215 Year = 1975}
216
217 @article{Forester97,
218 Author = {T.~R. Forester and W. Smith and J.~H.~R. Clarke},
219 Journal = {J. Chem. Soc. - Faraday Transactions},
220 Pages = {613-619},
221 Title = {Antibiotic activity of valinomycin - Molecular dynamics simulations involving the water/membrane interface},
222 Volume = 93,
223 Year = 1997}
224
225 @article{Tieleman98,
226 Author = {D.~P. Tieleman and H.~J.~C. Berendsen},
227 Journal = bj,
228 Pages = {2786-2801},
229 Title = {A molecular dynamics study of the pores formed by Escherichia coli OmpF porin in a fully hydrated palmitoyloleoylphosphatidylcholine bilayer},
230 Volume = 74,
231 Year = 1998}
232
233 @article{Cascales98,
234 Author = {J.~J.~L. Cascales and J.~G.~H. Cifre and J.~G. de~la~Torre},
235 Journal = {J. Phys. Chem. B},
236 Pages = {625-631},
237 Title = {Anaesthetic mechanism on a model biological membrane: A molecular dynamics simulation study},
238 Volume = 102,
239 Year = 1998}
240
241 @article{Bassolino95,
242 Author = {D. Bassolino and H.~E. Alper and T.~R. Stouch},
243 Journal = {J. Am. Chem. Soc.},
244 Pages = {4118-4129},
245 Title = {MECHANISM OF SOLUTE DIFFUSION THROUGH LIPID BILAYER-MEMBRANES BY MOLECULAR-DYNAMICS SIMULATION},
246 Volume = 117,
247 Year = 1995}
248
249 @article{Alper95,
250 Author = {H.~E. Alper and T.~R. Stouch},
251 Journal = {J. Phys. Chem.},
252 Pages = {5724-5731},
253 Title = {ORIENTATION AND DIFFUSION OF A DRUG ANALOG IN BIOMEMBRANES - MOLECULAR-DYNAMICS SIMULATIONS},
254 Volume = 99,
255 Year = 1995}
256
257 @article{Sok92,
258 Author = {R.~M. Sok and H.~J.~C. Berendsen and W.~F. {van~Gunsteren}},
259 Journal = {J. Chem. Phys.},
260 Pages = {4699-4704},
261 Title = {MOLECULAR-DYNAMICS SIMULATION OF THE TRANSPORT OF SMALL MOLECULES ACROSS A POLYMER MEMBRANE},
262 Volume = 96,
263 Year = 1992}
264
265 @article{Rabani99,
266 Author = {E. Rabani and J.~D. Gezelter and B.~J. Berne},
267 Journal = prl,
268 Pages = {3649},
269 Title = {Direct Observation of Stretched-Exponential Relaxation in Low-Temperature Lennard-Jones Systems Using the Cage Correlation Function},
270 Volume = 82,
271 Year = {1999}}
272
273 @article{Rabani97,
274 Author = {E. Rabani and J.~D. Gezelter and B.~J. Berne},
275 Journal = {J. Chem. Phys.},
276 Pages = {6867-6876},
277 Title = {Calculating the hopping rate for self-diffusion on rough potential energy surfaces: Cage correlations},
278 Volume = 107,
279 Year = 1997}
280
281 @article{Gezelter99,
282 Author = {J.~D. Gezelter and E. Rabani and B.~J. Berne},
283 Journal = jcp,
284 Pages = 3444,
285 Title = {Methods for calculating the hopping rate for orientational and spatial diffusion in a molecular liquid: $\mbox{CS}_{2}$},
286 Volume = 110,
287 Year = 1999}
288
289 @article{Gezelter98a,
290 Author = {J.~D. Gezelter and E. Rabani and B.~J. Berne},
291 Journal = jcp,
292 Pages = 4695,
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294 Volume = 109,
295 Year = 1998}
296
297 @article{Gezelter97,
298 Author = {J.~D. Gezelter and E. Rabani and B.~J. Berne},
299 Journal = jcp,
300 Pages = 4618,
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302 Volume = 107,
303 Year = 1997}
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305 @article{Zwanzig83,
306 Author = {R. Zwanzig},
307 Journal = jcp,
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310 Volume = 79,
311 Year = 1983}
312
313 @article{Zwanzig88,
314 Author = {R. Zwanzig},
315 Journal = {Proc. Natl. Acad. Sci. USA},
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318 Volume = 85,
319 Year = 1988}
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329 @incollection{Angell85,
330 Address = {Springfield, VA},
331 Author = {C.~A. Angell},
332 Booktitle = {Relaxations in Complex Systems},
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334 Pages = 1,
335 Publisher = {National Technical Information Service, U.S. Department of Commerce},
336 Title = {unknown},
337 Year = 1985}
338
339 @article{Bembenek96,
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347 @article{Sun97,
348 Author = {X. Sun and W.~H. Miller},
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352 Volume = 106,
353 Year = 1997}
354
355 @article{Spath96,
356 Author = {B.~W. Spath and W.~H. Miller},
357 Journal = jcp,
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363 @book{Warshel91,
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366 Publisher = {Wiley},
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368 Year = 1991}
369
370 @article{Vuilleumier97,
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374 Volume = {in press},
375 Year = 1997}
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378 Author = {W. Kob and H.~C. Andersen},
379 Journal = pre,
380 Pages = {4626-4641},
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382 Volume = 51,
383 Year = 1995}
384
385 @article{Kob95b,
386 Author = {W. Kob and H.~C. Andersen},
387 Journal = pre,
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394 Address = {Amsterdam},
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396 Booktitle = {Liquids, Freezing and Glass Transitions},
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399 Publisher = {North-Holland},
400 Title = {Aspects of Structural Glass Transitions},
401 Volume = {I},
402 Year = 1989}
403
404 @article{Sun97a,
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409 Year = 1997}
410
411 @article{Keshavamurthy94,
412 Author = {S. Keshavamurthy and W.~H. Miller},
413 Journal = cpl,
414 Pages = 189,
415 Title = {ivr},
416 Volume = 218,
417 Year = 1994}
418
419 @article{Billing75,
420 Author = {G.~D. Billing},
421 Journal = cpl,
422 Pages = 391,
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425 Year = 1975}
426
427 @article{Chang90,
428 Author = {Y.-T. Chang and W.~H. Miller},
429 Journal = jpc,
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432 Volume = 94,
433 Year = 1990}
434
435 @article{Shor94,
436 Author = {P.W. Shor},
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438 Pages = {124-134},
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440 Year = 1994}
441
442 @article{Feynman82,
443 Author = {R.~P. Feynman},
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445 Pages = {467-488},
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447 Volume = 21,
448 Year = 1982}
449
450 @article{Grover97,
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464 Year = 1998}
465
466 @article{Monroe95,
467 Author = {C. Monroe and D.~M. Meekhof and B.~E. King and W.~M. Itano and D.~J. Wineland},
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471 Volume = 75,
472 Year = 1995}
473
474 @article{Lent93,
475 Author = {C.~S. Lent and P.~D. Tougaw and W.~Porod and G.~H. Bernstein},
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480 Year = 1993}
481
482 @article{Barenco95,
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488 Year = 1995}
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515 Author = {A.~R. Calderbank and P.~W. Shor},
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528 Year = 1996}
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539 Author = {A.~C. Chakrabarti and D.~W. Deamer},
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568 Year = 1992}
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570 @article{Venable93,
571 Author = {R.~M. Venable and Y. Zhang and B.~J. Hardy and R.~W. Pastor},
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576 Year = 1993}
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1951 Author = {Paul M. Alsing and Evangelos Coutsias and John McIver},
1952 Booktitle = {High Performance Computing in Engineering VI},
1953 Editor = {M. Ingber and H. Power and C.A. Brebbia},
1954 Pages = {81-90},
1955 Publisher = {WIT},
1956 Title = {The interfacial behavior of liquid water near hydrophobic surfaces: a parallel force decomposition molecular dynamics code},
1957 Year = {2000}}
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1959 @article{Cygan04,
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1961 Journal = jpcb,
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1964 Volume = 108,
1965 Year = 2004}
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1967 @article{Frenkel84,
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1969 Journal = jcp,
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1973 Volume = 81,
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1978 Journal = jacs,
1979 Pages = {5982-5986},
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1981 Volume = 110,
1982 Year = 1988}
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1984 @article{Meijer90,
1985 Author = {E.~J. Meijer and D. Frenkel and R.~A. LeSar and A.~J.~C. Ladd},
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1988 Pages = {7570-7575},
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2002 @article{Vlot99,
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