[ViewVC] Log of: group/trunk/oopsePaper

Revision 3389 - Directory Listing - [select for diffs]
Modified Tue Apr 29 17:50:49 2008 UTC (16 years, 2 months ago) by gezelter
Diff to previous 1439 , to selected 966

Changes about metals

Revision 1439 - Directory Listing - [select for diffs]
Modified Thu Jul 29 20:06:07 2004 UTC (19 years, 11 months ago) by gezelter
Diff to previous 1434 , to selected 966

Post-submission clean-up

Revision 1434 - Directory Listing - [select for diffs]
Modified Thu Jul 29 18:01:05 2004 UTC (19 years, 11 months ago) by chrisfen
Diff to previous 1433 , to selected 966

Added Water.frc discussion, improved the integrator section, added references

Revision 1433 - Directory Listing - [select for diffs]
Modified Thu Jul 29 14:11:47 2004 UTC (19 years, 11 months ago) by chrisfen
Diff to previous 1428 , to selected 966

Added two new figures

Revision 1428 - Directory Listing - [select for diffs]
Modified Wed Jul 28 19:46:08 2004 UTC (19 years, 11 months ago) by gezelter
Diff to previous 1425 , to selected 966

new updates

Revision 1425 - Directory Listing - [select for diffs]
Modified Wed Jul 28 15:44:21 2004 UTC (19 years, 11 months ago) by gezelter
Diff to previous 1179 , to selected 966

edits done

Revision 1179 - Directory Listing - [select for diffs]
Modified Fri May 14 15:50:27 2004 UTC (20 years, 1 month ago) by mmeineke
Diff to previous 1177 , to selected 966

more revisions

Revision 1177 - Directory Listing - [select for diffs]
Modified Thu May 13 15:00:59 2004 UTC (20 years, 1 month ago) by tim
Diff to previous 1168 , to selected 966

add some keywords

Revision 1168 - Directory Listing - [select for diffs]
Modified Wed May 12 19:32:47 2004 UTC (20 years, 1 month ago) by mmeineke
Diff to previous 1155 , to selected 966

added more revisions to the paper

Revision 1155 - Directory Listing - [select for diffs]
Modified Tue May 11 19:36:28 2004 UTC (20 years, 1 month ago) by mmeineke
Diff to previous 1149 , to selected 966

starting to rearrange the prose after the intro.

Revision 1149 - Directory Listing - [select for diffs]
Modified Thu May 6 19:15:52 2004 UTC (20 years, 1 month ago) by mmeineke
Diff to previous 1148 , to selected 966

added more tables.

Revision 1148 - Directory Listing - [select for diffs]
Modified Thu May 6 16:54:50 2004 UTC (20 years, 1 month ago) by mmeineke
Diff to previous 1147 , to selected 966

added more tables

Revision 1147 - Directory Listing - [select for diffs]
Modified Wed May 5 17:42:55 2004 UTC (20 years, 1 month ago) by mmeineke
Diff to previous 1146 , to selected 966

added in all of the general global keywords. Still need to add the zConstraint and minimizer keywords.

Revision 1146 - Directory Listing - [select for diffs]
Modified Tue May 4 19:41:47 2004 UTC (20 years, 1 month ago) by mmeineke
Diff to previous 1145 , to selected 966

adding to the table

Revision 1145 - Directory Listing - [select for diffs]
Modified Tue May 4 16:59:14 2004 UTC (20 years, 1 month ago) by mmeineke
Diff to previous 1134 , to selected 966

adding a separate file to work on the bass keywords.

Revision 1134 - Directory Listing - [select for diffs]
Modified Mon Apr 26 21:05:03 2004 UTC (20 years, 2 months ago) by mmeineke
Diff to previous 1123 , to selected 966

finished removing the trajectory analysis.

took out the rattle derivation.

added a section concerning the creation of init files.

currently working on a table of key words for the package.

Revision 1123 - Directory Listing - [select for diffs]
Modified Mon Apr 19 21:25:23 2004 UTC (20 years, 2 months ago) by mmeineke
Diff to previous 1122 , to selected 966

 fixed the makefile, and fixed some visuals on the schemes

Revision 1122 - Directory Listing - [select for diffs]
Modified Mon Apr 19 21:07:53 2004 UTC (20 years, 2 months ago) by mmeineke
Diff to previous 1121 , to selected 966

finished cleaning up the old tex files

Revision 1121 - Directory Listing - [select for diffs]
Modified Mon Apr 19 21:00:24 2004 UTC (20 years, 2 months ago) by mmeineke
Diff to previous 1082 , to selected 966

Just copied over the changes from the dissertation.
Also converted the figures to pdf.
All revisions now take place on the oopsePaper.tex file

Revision 1082 - Directory Listing - [select for diffs]
Modified Wed Mar 3 23:16:18 2004 UTC (20 years, 4 months ago) by gezelter
Diff to previous 1081 , to selected 966

NPTf complete, NPTxyz complete

Revision 1081 - Directory Listing - [select for diffs]
Modified Wed Mar 3 20:50:51 2004 UTC (20 years, 4 months ago) by gezelter
Diff to previous 1079 , to selected 966

NPTi complete

Revision 1079 - Directory Listing - [select for diffs]
Modified Tue Mar 2 22:15:53 2004 UTC (20 years, 4 months ago) by gezelter
Diff to previous 1077 , to selected 966

NPT work in progress

Revision 1077 - Directory Listing - [select for diffs]
Modified Tue Mar 2 03:15:35 2004 UTC (20 years, 4 months ago) by gezelter
Diff to previous 1076 , to selected 966

More DLM changes

Revision 1076 - Directory Listing - [select for diffs]
Modified Mon Mar 1 22:29:28 2004 UTC (20 years, 4 months ago) by gezelter
Diff to previous 1069 , to selected 966

more changes for integrators

Revision 1069 - Directory Listing - [select for diffs]
Modified Thu Feb 26 15:28:57 2004 UTC (20 years, 4 months ago) by gezelter
Diff to previous 973 , to selected 966

Work on integrators

Revision 973 - Directory Listing - [select for diffs]
Modified Wed Jan 21 19:00:23 2004 UTC (20 years, 5 months ago) by mmeineke
Diff to previous 972 , to selected 966

minor corrections to the previous commit

Revision 972 - Directory Listing - [select for diffs]
Modified Wed Jan 21 18:40:38 2004 UTC (20 years, 5 months ago) by mmeineke
Diff to previous 968 , to selected 966

added changes into the Empirical Energy section

Revision 968 - Directory Listing - [select for diffs]
Modified Tue Jan 20 16:49:22 2004 UTC (20 years, 5 months ago) by tim
Diff to previous 967 , to selected 966

*** empty log message ***

Revision 967 - Directory Listing - [select for diffs]
Modified Tue Jan 20 14:17:21 2004 UTC (20 years, 5 months ago) by chrisfen
Diff to previous 966

Corrected .bib file entries

Revision 966 - Directory Listing - [selected]
Modified Mon Jan 19 21:44:47 2004 UTC (20 years, 5 months ago) by mmeineke
Diff to previous 964

ran spell check, and fixed some little typos

Revision 964 - Directory Listing - [select for diffs]
Modified Mon Jan 19 21:03:47 2004 UTC (20 years, 5 months ago) by mmeineke
Diff to previous 961 , to selected 966

worked listing schemes into the document

Revision 961 - Directory Listing - [select for diffs]
Modified Mon Jan 19 17:24:52 2004 UTC (20 years, 5 months ago) by chrisfen
Diff to previous 937 , to selected 966

Adjusted the SSD part of the paper...

Revision 937 - Directory Listing - [select for diffs]
Modified Tue Jan 13 20:46:01 2004 UTC (20 years, 5 months ago) by mmeineke
Diff to previous 935 , to selected 966

fixed some things in the periodic image part

Revision 935 - Directory Listing - [select for diffs]
Modified Tue Jan 13 20:10:23 2004 UTC (20 years, 5 months ago) by chrisfen
Diff to previous 933 , to selected 966

Made changes to the rigid body stuff...

Revision 933 - Directory Listing - [select for diffs]
Modified Tue Jan 13 20:03:21 2004 UTC (20 years, 5 months ago) by chuckv
Diff to previous 932 , to selected 966

more changes to eam section.

Revision 932 - Directory Listing - [select for diffs]
Modified Tue Jan 13 20:01:19 2004 UTC (20 years, 5 months ago) by chuckv
Diff to previous 931 , to selected 966

More typo fixes.

Revision 931 - Directory Listing - [select for diffs]
Modified Tue Jan 13 19:45:56 2004 UTC (20 years, 5 months ago) by chuckv
Diff to previous 930 , to selected 966

Changed section on eam.

Revision 930 - Directory Listing - [select for diffs]
Modified Tue Jan 13 19:24:07 2004 UTC (20 years, 5 months ago) by mmeineke
Diff to previous 928 , to selected 966

added new revisions

Revision 928 - Directory Listing - [select for diffs]
Modified Tue Jan 13 15:24:22 2004 UTC (20 years, 5 months ago) by tim
Diff to previous 925 , to selected 966

revision

Revision 925 - Directory Listing - [select for diffs]
Modified Mon Jan 12 18:43:56 2004 UTC (20 years, 5 months ago) by chrisfen
Diff to previous 918 , to selected 966

Updated the rigid body and ssd sections

Revision 918 - Directory Listing - [select for diffs]
Modified Fri Jan 9 20:57:55 2004 UTC (20 years, 5 months ago) by mmeineke
Diff to previous 917 , to selected 966

rotated the lipid figure

added eam to the Emperical Energy

Revision 917 - Directory Listing - [select for diffs]
Modified Fri Jan 9 20:50:37 2004 UTC (20 years, 5 months ago) by chuckv
Diff to previous 915 , to selected 966

Added daw entry.

Revision 915 - Directory Listing - [select for diffs]
Modified Fri Jan 9 20:25:50 2004 UTC (20 years, 5 months ago) by mmeineke
Diff to previous 908 , to selected 966

added a lennard jones section to the Emperical Energy section

Revision 908 - Directory Listing - [select for diffs]
Modified Thu Jan 8 17:55:53 2004 UTC (20 years, 5 months ago) by chrisfen
Diff to previous 904 , to selected 966

Added rigid body discussion and added to .bib file...

Revision 904 - Directory Listing - [select for diffs]
Modified Wed Jan 7 15:21:00 2004 UTC (20 years, 5 months ago) by tim
Diff to previous 903 , to selected 966

*** empty log message ***

Revision 903 - Directory Listing - [select for diffs]
Modified Wed Jan 7 03:53:53 2004 UTC (20 years, 5 months ago) by tim
Diff to previous 902 , to selected 966

Periodic Boundary Conditions

Revision 902 - Directory Listing - [select for diffs]
Modified Tue Jan 6 21:19:39 2004 UTC (20 years, 5 months ago) by mmeineke
Diff to previous 899 , to selected 966

started adding some changes from before break

Revision 899 - Directory Listing - [select for diffs]
Modified Tue Jan 6 18:53:58 2004 UTC (20 years, 5 months ago) by mmeineke
Diff to previous 820 , to selected 966

reworked the directory structure to reflect the Outline of the paper. All major sections now have their
own tex file

Revision 820 - Directory Listing - [select for diffs]
Modified Fri Oct 24 22:01:24 2003 UTC (20 years, 8 months ago) by gezelter
Diff to previous 819 , to selected 966

Started work on integrator stuff

Revision 819 - Directory Listing - [select for diffs]
Modified Fri Oct 24 21:28:19 2003 UTC (20 years, 8 months ago) by gezelter
Diff to previous 818 , to selected 966

New File

Revision 818 - Directory Listing - [select for diffs]
Modified Fri Oct 24 21:27:59 2003 UTC (20 years, 8 months ago) by gezelter
Diff to previous 806 , to selected 966

Formatting changes to get out of RevTex nonsense

Revision 806 - Directory Listing - [select for diffs]
Modified Fri Oct 17 05:07:49 2003 UTC (20 years, 8 months ago) by mmeineke
Diff to previous 805 , to selected 966

dded my handwritten pages from 10-16-03

Revision 805 - Directory Listing - [select for diffs]
Modified Thu Oct 16 21:02:41 2003 UTC (20 years, 8 months ago) by mmeineke
Diff to previous 779 , to selected 966

changed format to preprint article

Revision 779 - Directory Listing - [select for diffs]
Modified Sun Sep 21 05:09:16 2003 UTC (20 years, 9 months ago) by tim
Diff to previous 776 , to selected 966

Added zcons.tex

Revision 776 - Directory Listing - [select for diffs]
Modified Fri Sep 19 19:23:17 2003 UTC (20 years, 9 months ago) by chrisfen
Diff to previous 775 , to selected 966

Just added to the make file...

Revision 775 - Directory Listing - [select for diffs]
Modified Fri Sep 19 19:16:36 2003 UTC (20 years, 9 months ago) by chrisfen
Diff to previous 765 , to selected 966

Added the integrator.tex file with figure. This is the same as the ssdePaper, so it needs to be adjusted for the OOPSE paper. Also updated the oopse.bib file.

Revision 765 - Directory Listing - [select for diffs]
Modified Tue Sep 16 17:06:02 2003 UTC (20 years, 9 months ago) by chrisfen
Diff to previous 752 , to selected 966

SSD portion of paper added (ssd.tex).

Revision 752 - Directory Listing - [select for diffs]
Modified Mon Sep 8 20:58:12 2003 UTC (20 years, 9 months ago) by chuckv
Diff to previous 751 , to selected 966

*** empty log message ***

Revision 751 - Directory Listing - [select for diffs]
Modified Mon Sep 8 16:52:01 2003 UTC (20 years, 9 months ago) by chuckv
Diff to previous 740 , to selected 966

Added parallel section of paper.

Revision 740 - Directory Listing - [select for diffs]
Modified Tue Sep 2 18:40:47 2003 UTC (20 years, 10 months ago) by mmeineke
Diff to previous 737 , to selected 966

added a charmm citation to the bib file.

finished adding all of the equations into DUFF.

Revision 737 - Directory Listing - [select for diffs]
Modified Mon Sep 1 19:50:07 2003 UTC (20 years, 10 months ago) by mmeineke
Diff to previous 717 , to selected 966

added some text to DUFF, changed the preamble from two column to preprint format.

Revision 717 - Directory Listing - [select for diffs]
Modified Mon Aug 25 20:25:12 2003 UTC (20 years, 10 months ago) by mmeineke
Diff to previous 716 , to selected 966

did some more work on DUFF.

Revision 716 - Directory Listing - [select for diffs]
Modified Sun Aug 24 04:00:44 2003 UTC (20 years, 10 months ago) by mmeineke
Diff to previous 715 , to selected 966

added the lipid figure, and did some work on DUFF.

Revision 715 - Directory Listing - [select for diffs]
Modified Sun Aug 24 02:44:05 2003 UTC (20 years, 10 months ago) by mmeineke
Diff to previous 714 , to selected 966

little changes to finish the port from make current to currMake

Revision 714 - Directory Listing - [select for diffs]
Modified Sun Aug 24 02:36:10 2003 UTC (20 years, 10 months ago) by mmeineke
Diff to previous 713 , to selected 966

overhauled the makefile to build oopse.tex from the infiles rather than mess with includes.
Also renamed header and footer to preamble and bibEnd respectively.
make current has been replaced with currMake to tke a look at a single tex section.

Revision 713 - Directory Listing - [select for diffs]
Modified Sat Aug 23 17:01:50 2003 UTC (20 years, 10 months ago) by mmeineke
Diff to previous 712 , to selected 966

added some work to DUFF

Revision 712 - Directory Listing - [select for diffs]
Modified Sat Aug 23 12:07:27 2003 UTC (20 years, 10 months ago) by mmeineke
Diff to previous 710 , to selected 966

added a currMake script to replace the make current

Revision 710 - Directory Listing - [select for diffs]
Modified Fri Aug 22 19:37:54 2003 UTC (20 years, 10 months ago) by mmeineke
Diff to previous 709 , to selected 966

played a little with the headers in DUFF

Revision 709 - Directory Listing - [select for diffs]
Modified Thu Aug 21 21:17:52 2003 UTC (20 years, 10 months ago) by mmeineke
Diff to previous 698 , to selected 966

made some changes.

Revision 698 - Directory Listing - [select for diffs]
Modified Fri Aug 15 16:01:21 2003 UTC (20 years, 10 months ago) by mmeineke
Diff to previous 697 , to selected 966

started working on DUFF

Revision 697 - Directory Listing - [select for diffs]
Modified Thu Aug 14 17:24:38 2003 UTC (20 years, 10 months ago) by mmeineke
Diff to previous 695 , to selected 966

finished a rough draft of the dynamicProps section. added calculation sheme to the staticProps

Revision 695 - Directory Listing - [select for diffs]
Modified Wed Aug 13 21:22:44 2003 UTC (20 years, 10 months ago) by mmeineke
Diff to previous 691 , to selected 966

added text to the analysis code.

Revision 691 - Directory Listing - [select for diffs]
Modified Wed Aug 13 14:49:07 2003 UTC (20 years, 10 months ago) by mmeineke
Diff to previous 668 , to selected 966

trying to debug eqn references

Revision 668 - Directory Listing - [select for diffs]
Modified Wed Aug 6 18:35:50 2003 UTC (20 years, 10 months ago) by mmeineke
Diff to previous 666 , to selected 966

added the main equations to the analysis section

Revision 666 - Directory Listing - [select for diffs]
Modified Tue Aug 5 21:38:16 2003 UTC (20 years, 10 months ago) by mmeineke
Diff to previous 664 , to selected 966

edited the header to be a revtex style two column layout.

Revision 664 - Directory Listing - [select for diffs]
Modified Mon Aug 4 21:52:29 2003 UTC (20 years, 10 months ago) by mmeineke
Diff to previous 663 , to selected 966

added a current.tex to allow for looking at your current work, just change the include to the current tex file

also seperated all header info into header.tex so that oopse.tex and current.tex will behave the same.

Revision 663 - Directory Listing - [select for diffs]
Added Fri Aug 1 20:22:36 2003 UTC (20 years, 11 months ago) by mmeineke
Diff to selected 966

This commit was generated by cvs2svn to compensate for changes in r662,
which included commits to RCS files with non-trunk default branches.

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