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# Line 1764 | Line 1764 | on Foundations of Computer Science},
1764    year =         1995,
1765    volume =       117,
1766    pages =        {1-19},
1767 }
1768
1769 @Article{plimpton93,
1770  author =       {S.~J. Plimpton and B.~A. Hendrickson},
1771  title =        {Parallel Molecular Dynamics with the Embedded Atom Method},
1772  journal =      {MRS Proceedings},
1773  year =         1993,
1774  volume =       291,
1775  pages =        37
1767   }
1768  
1769  
# Line 1814 | Line 1805 | $\mbox{Cu, Ag, Au, Ni, Pd, Pt}$, and their alloys},
1805    pages =        7983
1806   }
1807  
1808 + @Article{EAM93,
1809 +  author =       {M.~S. Daw and S.~M. Foiles and M.~I. Baskes},
1810 +  title =        {The embededd-atom method},
1811 +  journal =      {Mat. Sci. Rep.},
1812 +  year =         1993,
1813 +  volume =       9,
1814 +  pages =        {251-310}
1815 + }
1816 +
1817   @Article{johnson89,
1818    author =       {R.~A. Johnson},
1819    title =        {Alloy models with the embedded-atom method},
# Line 2050 | Line 2050 | $\mbox{Cu, Ag, Au, Ni, Pd, Pt}$, and their alloys},
2050    pages =        {533-544}
2051   }
2052  
2053 +
2054 +
2055   @Article{fennell04,
2056 <  author =       {C.~J. Fennell and J.~D. Gezelter},
2057 <  title =        {On the structural and transport properties of the soft sticky dipole(SSD) and related single point water models},
2058 <  journal =      {J. Chem. Phys},
2059 <  year =         {in press 2004}
2056 >  author =       {C.~J. Fennell and J.~D. Gezelter},
2057 >  title =        {On the structural and transport properties of the soft sticky dipole(SSD) and related single point water models},
2058 >  journal =      jcp,
2059 >  year =         2004,
2060 >  volume =       120,
2061 >  number =       19,
2062 >  pages =        {9175-9184}
2063   }
2064  
2065   @Article{klein01,
# Line 2076 | Line 2081 | $\mbox{Cu, Ag, Au, Ni, Pd, Pt}$, and their alloys},
2081    pages =        {15233-15242}
2082   }
2083  
2084 + @Article{FletcherReeves,
2085 +  author =       {R. Fletcher and C.~M. Reeves},
2086 +  title =        {Function minimization by conjugate gradients},
2087 +  journal =      {Comput. J.},
2088 +  year =         1964,
2089 +  volume =       7,
2090 +  number =       2,
2091 +  pages =        {149-154}
2092 + }
2093 +
2094 + @Article{PolakRibiere,
2095 +  author =       {E. Polak and G. Ribiere},
2096 +  title =        {Note sur la convergence de methodes de directions conjugees},
2097 +  journal =      {Rev. Fr. Inform. Rech. Oper.},
2098 +  year =         1969,
2099 +  volume =       {16-R1},
2100 +  pages =        {35-43}
2101 + }
2102 +
2103 + @article{Voter:87,
2104 +        Author = {A.F. Voter and S.P. Chen},
2105 +        Journal = {Mat. Res. Soc. Symp. Proc.},
2106 +        Pages = {175},
2107 +        Title = {Accurate Interatomic Potentials for Ni, Al, and Ni3Al},
2108 +        Volume = {82},
2109 +        Year = {1987}}
2110 +
2111 + @article{Hendrickson:95,
2112 +        Author = {Bruce Hendrickson and Steve Plimpton},
2113 +        Journal = {Journal of Parallel and Distributed Computing},
2114 +        Pages = {15-25},
2115 +        Title = {Parallel Many-body Simulations without All-to-All Communication},
2116 +        Volume = {27},
2117 +        Year = {1995}}
2118 +
2119 +
2120 +
2121 + @InProceedings{Paradyn,
2122 +  author =       {S.~J. Plimpton and B.~A. Hendrickson},
2123 +  title =        {Parallel Molecular Dynamics With the Embedded Atom Method},
2124 +  booktitle =    {Materials Theory and Modelling},
2125 +  pages =        37,
2126 +  year =         1993,
2127 +  editor =       {J. Broughton and P. Bristowe and J. Newsam},
2128 +  volume =       291,
2129 +  series =       {MRS Proceedings},
2130 +  address =      {Pittsburgh, PA},
2131 +  publisher =    {Materials Research Society}
2132 + }
2133 +
2134 + @article{Voter:95,
2135 +        Author = {A.F. Voter},
2136 +        Journal = {Intermetallic Compounds: Principles and Practice},
2137 +        Pages = {77},
2138 +        Title = {The Embedded-Atom Method},
2139 +        Volume = {1},
2140 +        Year = {1995}}
2141 +
2142 + @article{Heller:90,
2143 +        Author = {H. Heller and H. Grubmuller and K. Schulten},
2144 +        Journal = {Molecular Simulation},
2145 +        Pages = {133},
2146 +        Title = {Molecular dynamics simulation on a parallel computer},
2147 +        Volume = {5},
2148 +        Year = {1990}}
2149 +
2150 + @Book{Fox88,
2151 +  author =       {G.~C. Fox and M.~A. Johnson and G.~A Lyzenga and S.~W. Otto and J.~K. Salmon and D.~W. Walker},
2152 +  title =        {Solving Promblems on Concurrent Processors},
2153 +  publisher =    {Prentice-Hall},
2154 +  year =         1988,
2155 +  volume =       {I},
2156 +  address =      {Englewood Cliffs, NJ}
2157 + }
2158 +
2159 + @Article{Gromacs,
2160 +  author =       {H.~J.~C. Berendsen, D. van~der~Spoel and R. van~Drunen},
2161 +  title =        {GROMACS: A message-passing parallel molecular dynamics implementation},
2162 +  journal =      {Comp. Phys. Comm.},
2163 +  year =         1995,
2164 +  volume =       91,
2165 +  pages =        {43-56}
2166 + }
2167 +
2168 + @Article{Gromacs3,
2169 +  author =       {E. Lindahl and B. Hess and D. van~der~Spoel},
2170 +  title =        {GROMACS 3.0: A package for molecular simulation and trajectory analysis},
2171 +  journal =      {J. Mol. Mod.},
2172 +  year =         2001,
2173 +  volume =       7,
2174 +  pages =        {306-317}
2175 + }
2176 +
2177 + @Article{DL_POLY,
2178 +  author =       {W. Smith and T. Forester},
2179 +  title =        {DL_POLY_2.0: A general-purpose parallel molecular dynamics simulation package },
2180 +  journal =      {J. Molec. Graphics.},
2181 +  year =         1996,
2182 +  volume =       14,
2183 +  number =       3,
2184 +  pages =        {136-141}
2185 + }
2186 +
2187 + @Article{Tinker,
2188 +  author =       {J.~W. Ponder and F.~M. Richards},
2189 +  title =        {AN EFFICIENT NEWTON-LIKE METHOD FOR MOLECULAR MECHANICS ENERGY MINIMIZATION OF LARGE MOLECULES},
2190 +  journal =      {J. Comp. Chem.},
2191 +  year =         1987,
2192 +  volume =       8,
2193 +  number =       7,
2194 +  pages =        {1016-1024}
2195 + }
2196 +
2197 + @Article{Berendsen87,
2198 +  author =       {H.~J.~C. Berendsen and J.~R. Grigera and T.~P. Straatsma},
2199 +  title =        {The Missing Term in Effective Pair Potentials},
2200 +  journal =      jpc,
2201 +  year =         1987,
2202 +  volume =       91,
2203 +  pages =        {6269-6271}
2204 + }
2205 +
2206 + @InCollection{Berendsen81,
2207 +  author =       {H.~J.~C. Berendsen and J.~P.~M. Postma and W.~F. {van~Gunsteren} and J. Hermans},
2208 +  title =        {Simple Point Charge Water},
2209 +  booktitle =    {Intermolecular Forces},
2210 +  pages =        331,
2211 +  publisher =    {Reidel},
2212 +  year =         1981,
2213 +  editor =       {B. Pullman},
2214 +  address =      {Dordrecht}
2215 + }
2216 +
2217 +
2218 + @Article{Mahoney00,
2219 +  author =       {M.~W. Mahoney and W.~L. Jorgensen},
2220 +  title =        {A five-site model for liquid water and the reproduction of the density anomaly by rigid, nonpolarizable potential functions},
2221 +  journal =      jcp,
2222 +  year =         2000,
2223 +  volume =       112,
2224 +  number =       20,
2225 +  pages =        {8910-8922}
2226 + }
2227 +

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