--- trunk/tcProps/tcProps.c	2004/02/11 21:55:56	1049
+++ trunk/tcProps/tcProps.c	2004/02/13 22:13:06	1052
@@ -1,9 +1,12 @@
+#define _FILE_OFFSET_BITS 64
+
 #include <stdio.h>
 #include <stdlib.h>
 
 
 #include "params.h"
 #include "tcProps.h"
+#include "readWrite.h"
 
 
 int main( int argC, char *argV[] ){
@@ -15,18 +18,28 @@ int main( int argC, char *argV[] ){
   const int nLipids = NLIPIDS;
   const int nSSD = NSSD;
   const int nAtoms = nLipAtoms * nLipids + nSSD;
+
+  // different needed variables
   
   struct atomCoord atoms[nAtoms];
+  int i,j,k;
+  char* inName;
+  int nFrames;
 
+  // system initialization
   
+  isScanned = 0;
 
-  int i,j,k;
-  
+
   // initialize the arrays
 
   for(i=0;i<nLipids;i++){
 
     atoms[nLipAtoms*i+0].type = HEAD;
+    atoms[nLipAtoms*i+0].u[0] = 0.0;
+    atoms[nLipAtoms*i+0].u[1] = 0.0;
+    atoms[nLipAtoms*i+0].u[2] = 1.0;
+    
 
     atoms[nLipAtoms*i+1].type = CH2;
 
@@ -65,6 +78,14 @@ int main( int argC, char *argV[] ){
     atoms[nLipAtoms*i+18].type = CH3;
   }
   
-  for(i=;i<nAtoms;i++){
+  for(i=(nLipAtoms*nLipids);i<nAtoms;i++){
     atoms[i].type = SSD;
+    atoms[i].u[0] = 0.0;
+    atoms[i].u[1] = 0.0;
+    atoms[i].u[2] = 1.0;
   }
+
+  // read and set the frames
+  
+  nFrames = setFrames( inName );
+