--- trunk/tengDissertation/Appendix.tex 2006/06/08 19:54:33 2826 +++ trunk/tengDissertation/Appendix.tex 2006/06/08 20:05:53 2827 @@ -300,12 +300,8 @@ freedom. Here is a diagram of the class heirarchy: \begin{figure} \centering \includegraphics[width=3in]{heirarchy.eps} -\caption[Class heirarchy for StuntDoubles in {\sc oopse}-3.0]{ \\ -The class heirarchy of StuntDoubles in {\sc oopse}-3.0. The -selection syntax allows the user to select any of the objects that -are descended from a StuntDouble.} \label{oopseFig:heirarchy} -\end{figure} - +\caption[Class heirarchy for StuntDoubles in {\sc oopse}-3.0]{ The +class heirarchy of StuntDoubles in {\sc oopse}-3.0. \begin{itemize} \item A {\bf StuntDouble} is {\it any} object that can be manipulated by the integrators and minimizers. @@ -313,7 +309,8 @@ DirectionalAtom}s which behaves as a single unit. \item A {\bf DirectionalAtom} is an atom which has {\it orientational} as well as translational degrees of freedom. \item A {\bf RigidBody} is a collection of {\bf Atom}s or {\bf DirectionalAtom}s which behaves as a single unit. -\end{itemize} +\end{itemize}} \label{oopseFig:heirarchy} +\end{figure} Every Molecule, Atom and DirectionalAtom in {\sc OOPSE} have their own names which are specified in the {\tt .md} file. In contrast,