--- trunk/tengDissertation/Appendix.tex 2006/06/09 02:41:58 2839 +++ trunk/tengDissertation/Appendix.tex 2006/06/09 02:54:01 2840 @@ -1,10 +1,8 @@ \appendix \chapter{\label{chapt:oopse}Object-Oriented Parallel Simulation Engine} -Designing object-oriented software is hard, and designing reusable -object-oriented scientific software is even harder. Absence of -applying modern software development practices is the bottleneck of -Scientific Computing community\cite{Wilson2006}. For instance, in +Absence of applying modern software development practices is the +bottleneck of Scientific Computing community\cite{Wilson2006}. In the last 20 years , there are quite a few MD packages that were developed to solve common MD problems and perform robust simulations . However, many of the codes are legacy programs that are either @@ -64,11 +62,9 @@ as \texttt{StatProps} (see Sec.~\ref{appendixSection:S program of the package, \texttt{oopse} and it corresponding parallel version \texttt{oopse\_MPI}, as well as other useful utilities, such as \texttt{StatProps} (see Sec.~\ref{appendixSection:StaticProps}), -\texttt{DynamicProps} (see -Sec.~\ref{appendixSection:appendixSection:DynamicProps}), -\texttt{Dump2XYZ} (see -Sec.~\ref{appendixSection:appendixSection:Dump2XYZ}), \texttt{Hydro} -(see Sec.~\ref{appendixSection:appendixSection:hydrodynamics}) +\texttt{DynamicProps} (see Sec.~\ref{appendixSection:DynamicProps}), +\texttt{Dump2XYZ} (see Sec.~\ref{appendixSection:Dump2XYZ}), +\texttt{Hydro} (see Sec.~\ref{appendixSection:hydrodynamics}) \textit{etc}. \begin{figure}