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# Line 914 | Line 914 | initialization of a simulation. Sec.~\ref{introSec:pro
914   \end{enumerate}
915   These three individual steps will be covered in the following
916   sections. Sec.~\ref{introSec:initialSystemSettings} deals with the
917 < initialization of a simulation. Sec.~\ref{introSec:production} will
918 < discusses issues in production run. Sec.~\ref{introSection:Analysis}
919 < provides the theoretical tools for trajectory analysis.
917 > initialization of a simulation. Sec.~\ref{introSection:production}
918 > will discusses issues in production run.
919 > Sec.~\ref{introSection:Analysis} provides the theoretical tools for
920 > trajectory analysis.
921  
922   \subsection{\label{introSec:initialSystemSettings}Initialization}
923  
# Line 1343 | Line 1344 | operations
1344   \[
1345   \hat vu = v \times u
1346   \]
1346
1347   Using \ref{introEqaution:RBMotionPI}, one can construct a skew
1348   matrix,
1349   \begin{equation}
1350 < (\mathop \Pi \limits^ \bullet   - \mathop \Pi \limits^ \bullet  ^T
1350 > (\mathop \Pi \limits^ \bullet   - \mathop \Pi \limits^ {\bullet  ^T}
1351   ){\rm{ }} = {\rm{ }}(\Pi  - \Pi ^T ){\rm{ }}(J^{ - 1} \Pi  + \Pi J^{
1352   - 1} ) + \sum\limits_i {[Q^T F_i (r,Q)X_i^T  - X_i F_i (r,Q)^T Q]} -
1353   (\Lambda  - \Lambda ^T ) . \label{introEquation:skewMatrixPI}
# Line 1376 | Line 1376 | first term of \ref{ introEquation:bodyAngularMotion}).
1376  
1377   If there is not external forces exerted on the rigid body, the only
1378   contribution to the rotational is from the kinetic potential (the
1379 < first term of \ref{ introEquation:bodyAngularMotion}). The free
1380 < rigid body is an example of Lie-Poisson system with Hamiltonian
1381 < function
1379 > first term of \ref{introEquation:bodyAngularMotion}). The free rigid
1380 > body is an example of Lie-Poisson system with Hamiltonian function
1381   \begin{equation}
1382   T^r (\pi ) = T_1 ^r (\pi _1 ) + T_2^r (\pi _2 ) + T_3^r (\pi _3 )
1383   \label{introEquation:rotationalKineticRB}
# Line 2012 | Line 2011 | obtain the resistance tensor at $P$ by
2011   \begin{array}{l}
2012   \Xi _P^{tt}  = \Xi _O^{tt}  \\
2013   \Xi _P^{tr}  = \Xi _P^{rt}  = \Xi _O^{tr}  - U_{OP} \Xi _O^{tt}  \\
2014 < \Xi _P^{rr}  = \Xi _O^{rr}  - U_{OP} \Xi _O^{tt} U_{OP}  + \Xi _O^{tr} U_{OP}  - U_{OP} \Xi _O^{tr} ^{^T }  \\
2014 > \Xi _P^{rr}  = \Xi _O^{rr}  - U_{OP} \Xi _O^{tt} U_{OP}  + \Xi _O^{tr} U_{OP}  - U_{OP} \Xi _O^{{tr} ^{^T }}  \\
2015   \end{array}
2016   \label{introEquation:resistanceTensorTransformation}
2017   \end{equation}

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