98 |
|
estimation of friction tensor from hydrodynamics theory into the |
99 |
|
sophisticated rigid body dynamics. |
100 |
|
|
101 |
< |
\section{Method{\label{methodSec}}} |
101 |
> |
\section{Computational methods{\label{methodSec}}} |
102 |
|
|
103 |
|
\subsection{\label{introSection:frictionTensor}Friction Tensor} |
104 |
|
Theoretically, the friction kernel can be determined using velocity |
360 |
|
where $x_OR$, $y_OR$, $z_OR$ are the components of the vector |
361 |
|
joining center of resistance $R$ and origin $O$. |
362 |
|
|
363 |
< |
\subsection{Langevin dynamics for rigid particles of arbitrary shape} |
363 |
> |
\subsection{Langevin dynamics for rigid particles of arbitrary shape\label{LDRB}} |
364 |
|
|
365 |
|
Consider a Langevin equation of motions in generalized coordinates |
366 |
|
\begin{equation} |
517 |
|
|
518 |
|
\section{Results and discussion} |
519 |
|
|
520 |
< |
\begin{figure} |
521 |
< |
\centering |
522 |
< |
\includegraphics[width=\linewidth]{one_banana.eps} |
523 |
< |
\caption[]{.} \label{langevin:banana} |
524 |
< |
\end{figure} |
520 |
> |
The Langevin algorithm described in Sec.~\ref{LDRB} has been |
521 |
> |
implemented in {\sc oopse}\cite{Meineke2005} and applied to several |
522 |
> |
test systems. |
523 |
|
|
524 |
+ |
\subsection{Langevin dynamics of} |
525 |
+ |
|
526 |
|
\begin{figure} |
527 |
|
\centering |
528 |
|
\includegraphics[width=\linewidth]{temperature.eps} |
529 |
|
\caption[]{.} \label{langevin:temperature} |
530 |
|
\end{figure} |
531 |
|
|
532 |
+ |
\subsection{LD of banana-shaped molecule} |
533 |
+ |
|
534 |
+ |
\begin{figure} |
535 |
+ |
\centering |
536 |
+ |
\includegraphics[width=\linewidth]{one_banana.eps} |
537 |
+ |
\caption[]{.} \label{langevin:banana} |
538 |
+ |
\end{figure} |
539 |
+ |
|
540 |
|
\section{Conclusions} |