| 79 |
|
average acceleration is not always true for cooperative motion which |
| 80 |
|
is common in protein motion. An inertial Brownian dynamics (IBD) was |
| 81 |
|
proposed to address this issue by adding an inertial correction |
| 82 |
< |
term\cite{Beard2001}. As a complement to IBD which has a lower bound |
| 82 |
> |
term\cite{Beard2000}. As a complement to IBD which has a lower bound |
| 83 |
|
in time step because of the inertial relaxation time, long-time-step |
| 84 |
|
inertial dynamics (LTID) can be used to investigate the inertial |
| 85 |
|
behavior of the polymer segments in low friction |
| 86 |
< |
regime\cite{Beard2001}. LTID can also deal with the rotational |
| 86 |
> |
regime\cite{Beard2000}. LTID can also deal with the rotational |
| 87 |
|
dynamics for nonskew bodies without translation-rotation coupling by |
| 88 |
|
separating the translation and rotation motion and taking advantage |
| 89 |
|
of the analytical solution of hydrodynamics properties. However, |
