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1   \chapter{\label{chapt:liquidcrystal}LIQUID CRYSTAL}
2  
3   \section{\label{liquidCrystalSection:introduction}Introduction}
4 % liquid crystal
4  
5   Long range orientational order is one of the most fundamental
6   properties of liquid crystal mesophases. This orientational
# Line 18 | Line 17 | segregation phenomena in disk-like molecules.
17   sufficiently long aliphatic chains has been reported, as well as the
18   segregation phenomena in disk-like molecules.
19  
21 % banana shaped
20   Recently, the banana-shaped or bent-core liquid crystal have became
21   one of the most active research areas in mesogenic materials and
22   supramolecular chemistry. Unlike rods and disks, the polarity and
# Line 32 | Line 30 | second-order nonlinear optical devices.
30   supramolecular chirality, the spontaneous polarization arises in
31   ferroelectric (FE) and antiferroelectic (AF) switching of smectic
32   liquid crystal phases, demonstrating some promising applications in
33 < second-order nonlinear optical devices.
33 > second-order nonlinear optical devices. The most widely investigated
34 > mesophase formed by banana-shaped moleculed is the $\text{B}_2$
35 > phase, which is also referred to as $\text{SmCP}$. Of the most
36 > important discover in this tilt lamellar phase is the four distinct
37 > packing arrangements (two conglomerates and two macroscopic
38 > racemates), which depend on the tilt direction and the polar
39 > direction of the molecule in adjacent layer (see
40 > Fig.~\cite{LCFig:SMCP}).
41  
42 < The most widely investigated mesophase formed by banana-shaped
43 < moleculed is the $\text{B}_2$ phase, which is also known as
44 < $\text{SmCP}$.
42 > \begin{figure}
43 > \centering
44 > \includegraphics[width=\linewidth]{smcp.eps}
45 > \caption[]
46 > {}
47 > \label{LCFig:SMCP}
48 > \end{figure}
49  
50 < %Previous Theoretical Studies
50 > Many liquid crystal synthesis experiments suggest that the
51 > occurrence of polarity and chirality strongly relies on the
52 > molecular structure and intermolecular interaction. From a
53 > theoretical point of view, it is of fundamental interest to study
54 > the structural properties of liquid crystal phases formed by
55 > banana-shaped molecules and understand their connection to the
56 > molecular structure, especially with respect to the spontaneous
57 > achiral symmetry breaking. As a complementary tool to experiment,
58 > computer simulation can provide unique insight into molecular
59 > ordering and phase behavior, and hence improve the development of
60 > new experiments and theories. In the last two decades, all-atom
61 > models have been adopted to investigate the structural properties of
62 > smectic arrangements\cite{Cook2000, Lansac2001}, as well as other
63 > bulk properties, such as rotational viscosity and flexoelectric
64 > coefficients\cite{Cheung2002, Cheung2004}. However, due to the
65 > limitation of time scale required for phase
66 > transition\cite{Wilson1999} and the length scale required for
67 > representing bulk behavior, the dominant models in the field of
68 > liquid crystal phase behavior are generic
69 > models\cite{Lebwohl1972,Perram1984, Gay1981}, which are based on the
70 > observation that liquid crystal order is exhibited by a range of
71 > non-molecular bodies with high shape anisotropies. Previous
72 > simulation studies using hard spherocylinder dimer
73 > model\cite{Camp1999} produce nematic phases, while hard rod
74 > simulation studies identified a Landau point\cite{Bates2005}, at
75 > which the isotropic phase undergoes a direct transition to the
76 > biaxial nematic, as well as some possible liquid crystal
77 > phases\cite{Lansac2003}. Other anisotropic models using
78 > Gay-Berne(GB) potential, which produce interactions that favor local
79 > alignment, give the evidence of the novel packing arrangements of
80 > bent-core molecules\cite{Memmer2002,Orlandi2006}.
81  
82 + Experimental studies by Levelut {\it et al.}~\cite{Levelut1981}
83 + revealed that terminal cyano or nitro groups usually induce
84 + permanent longitudinal dipole moments, which affect the phase
85 + behavior considerably. A series of theoretical studies also drawn
86 + equivalent conclusions. Monte Carlo studies of the GB potential with
87 + fixed longitudinal dipoles (i.e. pointed along the principal axis of
88 + rotation) were shown to enhance smectic phase
89 + stability~\cite{Berardi1996,Satoh1996}. Molecular simulation of GB
90 + ellipsoids with transverse dipoles at the terminus of the molecule
91 + also demonstrated that partial striped bilayer structures were
92 + developed from the smectic phase ~\cite{Berardi1996}. More
93 + significant effects have been shown by including multiple
94 + electrostatic moments. Adding longitudinal point quadrupole moments
95 + to rod-shaped GB mesogens, Withers \textit{et al} induced tilted
96 + smectic behaviour in the molecular system~\cite{Withers2003}. Thus,
97 + it is clear that many liquid-crystal forming molecules, specially,
98 + bent-core molecules, could be modeled more accurately by
99 + incorporating electrostatic interaction.
100 +
101 + In this chapter, we consider system consisting of banana-shaped
102 + molecule represented by three rigid GB particles with one or two
103 + point dipoles at different location. Performing a series of
104 + molecular dynamics simulations, we explore the structural properties
105 + of tilted smectic phases as well as the effect of electrostatic
106 + interactions.
107 +
108   \section{\label{liquidCrystalSection:model}Model}
109  
110 + A typical banana-shaped molecule consists of a rigid aromatic
111 + central bent unit with several rod-like wings which are held
112 + together by some linking units and terminal chains (see
113 + Fig.~\ref{LCFig:BananaMolecule}). In this work, each banana-shaped
114 + mesogen has been modeled as a rigid body consisting of three
115 + equivalent prolate ellipsoidal GB particles. The GB interaction
116 + potential used to mimic the apolar characteristics of liquid crystal
117 + molecules takes the familiar form of Lennard-Jones function with
118 + orientation and position dependent range ($\sigma$) and well depth
119 + ($\epsilon$) parameters. The potential between a pair of three-site
120 + banana-shaped molecules $a$ and $b$ is given by
121 + \begin{equation}
122 + V_{ab}^{GB}  = \sum\limits_{i \in a,j \in b} {V_{ij}^{GB} }.
123 + \end{equation}
124 + Every site-site interaction can can be expressed as,
125 + \begin{equation}
126 + V_{ij}^{GB}  = 4\epsilon (\hat u_i ,\hat u_j ,\hat r_{ij} )\left[
127 + {\left( {\frac{{\sigma _0 }}{{r_{ij}  - \sigma (\hat u_i ,\hat u_j
128 + ,\hat r_{ij} )}}} \right)^{12}  - \left( {\frac{{\sigma _0
129 + }}{{r_{ij}  - \sigma (\hat u_i ,\hat u_j ,\hat r_{ij} )}}} \right)^6
130 + } \right] \label{LCEquation:gb}
131 + \end{equation}
132 + where $\hat u_i,\hat u_j$ are unit vectors specifying the
133 + orientation of two molecules $i$ and $j$ separated by intermolecular
134 + vector $r_{ij}$. $\hat r_{ij}$ is the unit vector along the
135 + intermolecular vector. A schematic diagram of the orientation
136 + vectors is shown in Fig.\ref{LCFigure:GBScheme}. The functional form
137 + for $\sigma$ is given by
138 + \begin{equation}
139 + \sigma (\hat u_i ,\hat u_i ,\hat r_{ij} ) = \sigma _0 \left[ {1 -
140 + \frac{\chi }{2}\left( {\frac{{(\hat r_{ij}  \cdot \hat u_i  + \hat
141 + r_{ij}  \cdot \hat u_j )^2 }}{{1 + \chi \hat u_i  \cdot \hat u_j }}
142 + + \frac{{(\hat r_{ij}  \cdot \hat u_i  - \hat r_{ij}  \cdot \hat u_j
143 + )^2 }}{{1 - \chi \hat u_i  \cdot \hat u_j }}} \right)} \right]^{ -
144 + \frac{1}{2}},
145 + \end{equation}
146 + where the aspect ratio of the particles is governed by shape
147 + anisotropy parameter
148 + \begin{equation}
149 + \chi  = \frac{{(\sigma _e /\sigma _s )^2  - 1}}{{(\sigma _e /\sigma
150 + _s )^2  + 1}}.
151 + \label{LCEquation:chi}
152 + \end{equation}
153 + Here, $\sigma_ s$ and $\sigma_{e}$ refer to the side-by-side breadth
154 + and the end-to-end length of the ellipsoid, respectively. The well
155 + depth parameters takes the form
156 + \begin{equation}
157 + \epsilon (\hat u_i ,\hat u_j ,\hat r_{ij} ) = \epsilon _0 \epsilon
158 + ^v (\hat u_i ,\hat u_j )\epsilon '^\mu (\hat u_i ,\hat u_j ,\hat
159 + r_{ij} )
160 + \end{equation}
161 + where $\epsilon_{0}$ is a constant term and
162 + \begin{equation}
163 + \epsilon (\hat u_i ,\hat u_j ) = \frac{1}{{\sqrt {1 - \chi ^2 (\hat
164 + u_i  \cdot \hat u_j )^2 } }}
165 + \end{equation}
166 + and
167 + \begin{equation}
168 + \epsilon '(\hat u_i ,\hat u_j ,\hat r_{ij} ) = 1 - \frac{{\chi
169 + '}}{2}\left[ {\frac{{(\hat r_{ij}  \cdot \hat u_i  + \hat r_{ij}
170 + \cdot \hat u_j )^2 }}{{1 + \chi '\hat u_i  \cdot \hat u_j }} +
171 + \frac{{(\hat r_{ij}  \cdot \hat u_i  - \hat r_{ij}  \cdot \hat u_j
172 + )^2 }}{{1 - \chi '\hat u_i  \cdot \hat u_j }}} \right]
173 + \end{equation}
174 + where the well depth anisotropy parameter $\chi '$ depends on the
175 + ratio between \textit{end-to-end} well depth $\epsilon _e$ and
176 + \textit{side-by-side} well depth $\epsilon_s$,
177 + \begin{equation}
178 + \chi ' = \frac{{1 - (\epsilon _e /\epsilon _s )^{1/\mu} }}{{1 +
179 + (\epsilon _e /\epsilon _s )^{1/\mu} }}.
180 + \end{equation}
181 +
182 + \begin{figure}
183 + \centering
184 + \includegraphics[width=\linewidth]{banana.eps}
185 + \caption[]{} \label{LCFig:BananaMolecule}
186 + \end{figure}
187 +
188 + \begin{figure}
189 + \centering
190 + \includegraphics[width=\linewidth]{bananGB.eps}
191 + \caption[]{} \label{LCFigure:BananaGB}
192 + \end{figure}
193 +
194 + \begin{figure}
195 + \centering
196 + \includegraphics[width=\linewidth]{gb_scheme.eps}
197 + \caption[]{Schematic diagram showing definitions of the orientation
198 + vectors for a pair of Gay-Berne molecules}
199 + \label{LCFigure:GBScheme}
200 + \end{figure}
201 +
202 + To account for the permanent dipolar interactions, there should be
203 + an electrostatic interaction term of the form
204 + \begin{equation}
205 + V_{ab}^{dp}  = \sum\limits_{i \in a,j \in b} {\frac{1}{{4\pi
206 + \epsilon _{fs} }}\left[ {\frac{{\mu _i  \cdot \mu _j }}{{r_{ij}^3 }}
207 + - \frac{{3\left( {\mu _i  \cdot r_{ij} } \right)\left( {\mu _i \cdot
208 + r_{ij} } \right)}}{{r_{ij}^5 }}} \right]}
209 + \end{equation}
210 + where $\epsilon _{fs}$ is the permittivity of free space.
211 +
212   \section{\label{liquidCrystalSection:methods}Methods}
213  
214   \section{\label{liquidCrystalSection:resultDiscussion}Results and Discussion}

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