38 |
|
packing arrangements (two conglomerates and two macroscopic |
39 |
|
racemates), which depend on the tilt direction and the polar |
40 |
|
direction of the molecule in adjacent layer (see |
41 |
< |
Fig.~\cite{LCFig:SMCP}). |
41 |
> |
Fig.~\ref{LCFig:SMCP}). |
42 |
|
|
43 |
|
\begin{figure} |
44 |
|
\centering |
184 |
|
\caption[]{} \label{LCFig:BananaMolecule} |
185 |
|
\end{figure} |
186 |
|
|
187 |
< |
\begin{figure} |
188 |
< |
\centering |
189 |
< |
\includegraphics[width=\linewidth]{bananGB.eps} |
190 |
< |
\caption[]{} \label{LCFigure:BananaGB} |
191 |
< |
\end{figure} |
187 |
> |
%\begin{figure} |
188 |
> |
%\centering |
189 |
> |
%\includegraphics[width=\linewidth]{bananGB.eps} |
190 |
> |
%\caption[]{} \label{LCFigure:BananaGB} |
191 |
> |
%\end{figure} |
192 |
|
|
193 |
|
\begin{figure} |
194 |
|
\centering |
207 |
|
r_{ij} } \right)}}{{r_{ij}^5 }}} \right]} |
208 |
|
\end{equation} |
209 |
|
where $\epsilon _{fs}$ is the permittivity of free space. |
210 |
+ |
|
211 |
+ |
\section{Computational Methodology} |
212 |
+ |
|
213 |
+ |
A series of molecular dynamics simulations were perform to study the |
214 |
+ |
phase behavior of banana shaped liquid crystals. |
215 |
+ |
|
216 |
+ |
In each simulation, rod-like polar molecules have been represented |
217 |
+ |
by polar ellipsoidal Gay-Berne (GB) particles. The four parameters |
218 |
+ |
characterizing G-B potential were taken as $\mu = 1,~ \nu = 2, |
219 |
+ |
~\epsilon_{e}/\epsilon_{s} |
220 |
+ |
= 1/5$ and $\sigma_{e}/\sigma_{s} = 3$. The components of the |
221 |
+ |
scaled moment of inertia $(I^{*} = I/m \sigma_{s}^{2})$ along the |
222 |
+ |
major and minor axes were $I_{z}^{*} = 0.2$ and $I_{\perp}^{*} = |
223 |
+ |
1.0$. We used the reduced dipole moments $ \mu^{*} = \mu/(4 \pi |
224 |
+ |
\epsilon_{fs} \sigma_{0}^{3})^{1/2}= 1.0$ for terminal dipole and |
225 |
+ |
$ \mu^{*} = \mu/(4 |
226 |
+ |
\pi \epsilon_{fs} \sigma_{0}^{3})^{1/2}= 0.5$ for second dipole, |
227 |
+ |
where $\epsilon_{fs}$ was the permitivitty of free space. For all |
228 |
+ |
simulations the position of the terminal dipole |
229 |
+ |
has been kept |
230 |
+ |
at a fixed distance $d^{*} = d/\sigma_{s} = 1.0 $ from the |
231 |
+ |
centre of mass on the molecular symmetry axis. The second dipole |
232 |
+ |
takes $d^{*} = d/\sigma_{s} = 0.0 $ i.e. it is on the centre of |
233 |
+ |
mass. To investigate the molecular organization behaviour due to |
234 |
+ |
different dipolar orientation with respect to the symmetry axis, we |
235 |
+ |
selected dipolar angle $\alpha_{d} = 0$ to model terminal outward |
236 |
+ |
longitudinal dipole and $\alpha_{d} = \pi/2$ to model transverse |
237 |
+ |
outward dipole where the second dipole takes relative anti |
238 |
+ |
antiparallel orientation with respect to the first. System of |
239 |
+ |
molecules having a single transverse terminal dipole has also been |
240 |
+ |
studied. We ran a series of simulations to investigate the effect of |
241 |
+ |
dipoles on molecular organization. |
242 |
+ |
|
243 |
+ |
In each of the simulations 864 molecules were confined in a cubic |
244 |
+ |
box with periodic boundary conditions. The run started from a |
245 |
+ |
density $\rho^{*} = \rho \sigma_{0}^{3}$ = 0.01 with nonpolar |
246 |
+ |
molecules loacted on the sites of FCC lattice and having parallel |
247 |
+ |
orientation. This structure was not a stable structure at this |
248 |
+ |
density and it was melted at a reduced temperature $T^{*} = k_{B}T/ |
249 |
+ |
\epsilon_{0} = 4.0$ . We used this isotropic configuration which was |
250 |
+ |
both orientationally and translationally disordered, as the initial |
251 |
+ |
configuration for each simulation. The dipoles were also switched on |
252 |
+ |
from this point. Initial translational and angular velocities were |
253 |
+ |
assigned from the gaussian distribution of velocities. |
254 |
+ |
|
255 |
+ |
To get the ordered structure for each system of particular dipolar |
256 |
+ |
angles we increased the density from $\rho^{*} = 0.01$ to $\rho_{*} |
257 |
+ |
= 0.3$ with an increament size of 0.002 upto $\rho^{*} = 0.1$ and |
258 |
+ |
0.01 for the rest at some higher temperature. Temperature was then |
259 |
+ |
lowered in finer steps to avoid ending up with disordered glass |
260 |
+ |
phase and thus to help the molecules set with more order. For each |
261 |
+ |
system this process required altogether $5 \times 10^{6}$ MC cycles |
262 |
+ |
for equilibration. |
263 |
+ |
|
264 |
+ |
The torques and forces were calculated using velocity verlet |
265 |
+ |
algorithm. The time step size $\delta t^{*} = \delta t/(m |
266 |
+ |
\sigma_{0}^{2} / \epsilon_{0})^{1/2}$ was set at 0.0012 during the |
267 |
+ |
process. The orientations of molecules were described by quaternions |
268 |
+ |
instead of Eulerian angles to get the singularity-free orientational |
269 |
+ |
equations of motion. |
270 |
+ |
|
271 |
+ |
The interaction potential was truncated at a cut-off radius $r_{c} = |
272 |
+ |
3.8 \sigma_{0}$. The long range dipole-dipole interaction potential |
273 |
+ |
and torque were handled by the application of reaction field method |
274 |
+ |
~\cite{Allen87}. |
275 |
+ |
|
276 |
+ |
To investigate the phase structure of the model liquid crystal |
277 |
+ |
family we calculated the orientational order parameter, correlation |
278 |
+ |
functions. To identify a particular phase we took configurational |
279 |
+ |
snapshots at the onset of each layered phase. |
280 |
+ |
|
281 |
+ |
The orientational order parameter for uniaxial phase was calculated |
282 |
+ |
from the largest eigen value obtained by diagonalization of the |
283 |
+ |
order parameter tensor |
284 |
+ |
|
285 |
+ |
\begin{equation} |
286 |
+ |
\begin{array}{lr} |
287 |
+ |
Q_{\alpha \beta} = \frac{1}{2 N} \sum(3 e_{i \alpha} e_{i \beta} |
288 |
+ |
- \delta_{\alpha \beta}) & \alpha, \beta = x,y,z \\ |
289 |
+ |
\end{array} |
290 |
+ |
\end{equation} |
291 |
+ |
|
292 |
+ |
where $e_{i \alpha}$ was the $\alpha$ th component of the unit |
293 |
+ |
vector $e_{i}$ along the symmetry axis of the i th molecule. |
294 |
+ |
Corresponding eigenvector gave the director which defines the |
295 |
+ |
average direction of molecular alignment. |
296 |
+ |
|
297 |
+ |
The density correlation along the director is $g(z) = < \delta |
298 |
+ |
(z-z_{ij})>_{ij} / \pi R^{2} \rho $, where $z_{ij} = r_{ij} cos |
299 |
+ |
\beta_{r_{ij}}$ was measured in the director frame and $R$ is the |
300 |
+ |
radius of the cylindrical sampling region. |
301 |
+ |
|
302 |
+ |
|
303 |
+ |
\section{Results and Conclusion} |
304 |
+ |
\label{sec:results and conclusion} |
305 |
+ |
|
306 |
+ |
Analysis of the simulation results shows that relative dipolar |
307 |
+ |
orientation angle of the molecules can give rise to rich |
308 |
+ |
polymorphism of polar mesophases. |
309 |
+ |
|
310 |
+ |
The correlation function g(z) shows layering along perpendicular |
311 |
+ |
direction to the plane for a system of G-B molecules with two |
312 |
+ |
transverse outward pointing dipoles in fig. \ref{fig:1}. Both the |
313 |
+ |
correlation plot and the snapshot (fig. \ref{fig:4}) of their |
314 |
+ |
organization indicate a bilayer phase. Snapshot for larger system of |
315 |
+ |
1372 molecules also confirms bilayer structure (Fig. \ref{fig:7}). |
316 |
+ |
Fig. \ref{fig:2} shows g(z) for a system of molecules having two |
317 |
+ |
antiparallel longitudinal dipoles and the snapshot of their |
318 |
+ |
organization shows a monolayer phase (Fig. \ref{fig:5}). Fig. |
319 |
+ |
\ref{fig:3} gives g(z) for a system of G-B molecules with single |
320 |
+ |
transverse outward pointing dipole and fig. \ref{fig:6} gives the |
321 |
+ |
snapshot. Their organization is like a wavy antiphase (stripe |
322 |
+ |
domain). Fig. \ref{fig:8} gives the snapshot for 1372 molecules |
323 |
+ |
with single transverse dipole near the end of the molecule. |
324 |
+ |
|
325 |
+ |
\begin{figure} |
326 |
+ |
\begin{center} |
327 |
+ |
\epsfxsize=3in \epsfbox{fig1.ps} |
328 |
+ |
\end{center} |
329 |
+ |
\caption { Density projection of molecular centres (solid) and |
330 |
+ |
terminal dipoles (broken) with respect to the director g(z) for a |
331 |
+ |
system of G-B molecules with two transverse outward pointing |
332 |
+ |
dipoles, the first dipole having $d^{*}=1.0$, $\mu^{*}=1.0$ and the |
333 |
+ |
second dipole having $d^{*}=0.0$, $\mu^{*}=0.5$} \label{fig:1} |
334 |
+ |
\end{figure} |
335 |
|
|
336 |
+ |
|
337 |
+ |
\begin{figure} |
338 |
+ |
\begin{center} |
339 |
+ |
\epsfxsize=3in \epsfbox{fig2.ps} |
340 |
+ |
\end{center} |
341 |
+ |
\caption { Density projection of molecular centres (solid) and |
342 |
+ |
terminal dipoles (broken) with respect to the director g(z) for a |
343 |
+ |
system of G-B molecules with two antiparallel longitudinal dipoles, |
344 |
+ |
the first outward pointing dipole having $d^{*}=1.0$, $\mu^{*}=1.0$ |
345 |
+ |
and the second dipole having $d^{*}=0.0$, $\mu^{*}=0.5$} |
346 |
+ |
\label{fig:2} |
347 |
+ |
\end{figure} |
348 |
+ |
|
349 |
+ |
\begin{figure} |
350 |
+ |
\begin{center} |
351 |
+ |
\epsfxsize=3in \epsfbox{fig3.ps} |
352 |
+ |
\end{center} |
353 |
+ |
\caption {Density projection of molecular centres (solid) and |
354 |
+ |
terminal |
355 |
+ |
dipoles (broken) with respect to the director g(z) |
356 |
+ |
for a system of G-B molecules with single transverse outward |
357 |
+ |
pointing dipole, having $d^{*}=1.0$, $\mu^{*}=1.0$} \label{fig:3} |
358 |
+ |
\end{figure} |
359 |
+ |
|
360 |
+ |
\begin{figure} |
361 |
+ |
\centering \epsfxsize=2.5in \epsfbox{fig4.eps} \caption{Typical |
362 |
+ |
configuration for a system of 864 G-B molecules with two transverse |
363 |
+ |
dipoles, the first dipole having $d^{*}=1.0$, $\mu^{*}=1.0$ and the |
364 |
+ |
second dipole having $d^{*}=0.0$, $\mu^{*}=0.5$. The white caps |
365 |
+ |
indicate the location of the terminal dipole, while the orientation |
366 |
+ |
of the dipoles is indicated by the blue/gold coloring.} |
367 |
+ |
\label{fig:4} |
368 |
+ |
\end{figure} |
369 |
+ |
|
370 |
+ |
\begin{figure} |
371 |
+ |
\begin{center} |
372 |
+ |
\epsfxsize=3in \epsfbox{fig5.ps} |
373 |
+ |
\end{center} |
374 |
+ |
\caption {Snapshot of molecular configuration for a system of 864 |
375 |
+ |
G-B molecules with two antiparallel longitudinal dipoles, the first |
376 |
+ |
outward pointing dipole |
377 |
+ |
having $d^{*}=1.0$, $\mu^{*}=1.0$ and the second dipole having $d^{*}=0.0$, |
378 |
+ |
$\mu^{*}=0.5$ (fine lines are molecular symmetry axes and small |
379 |
+ |
thick lines show terminal dipolar direction, central dipoles are not |
380 |
+ |
shown).} \label{fig:5} |
381 |
+ |
\end{figure} |
382 |
+ |
|
383 |
+ |
|
384 |
+ |
\begin{figure} |
385 |
+ |
\begin{center} |
386 |
+ |
\epsfxsize=3in \epsfbox{fig6.ps} |
387 |
+ |
\end{center} |
388 |
+ |
\caption {Snapshot of molecular configuration for a system of 864 |
389 |
+ |
G-B molecules with single transverse outward pointing dipole, having |
390 |
+ |
$d^{*}=1.0$, $\mu^{*}=1.0$ (fine lines are molecular symmetry axes |
391 |
+ |
and small thick lines show terminal dipolar direction).} |
392 |
+ |
\label{fig:6} |
393 |
+ |
\end{figure} |
394 |
+ |
|
395 |
+ |
\begin{figure} |
396 |
+ |
\begin{center} |
397 |
+ |
\epsfxsize=3in \epsfbox{fig7.ps} |
398 |
+ |
\end{center} |
399 |
+ |
\caption {Snapshot of molecular configuration for a system of 1372 |
400 |
+ |
G-B molecules with two transverse outward pointing dipoles, the |
401 |
+ |
first dipole having $d^{*}=1.0$, $\mu^{*}=1.0$ and the second dipole |
402 |
+ |
having $d^{*}=0.0$, $\mu^{*}=0.5$(fine lines are molecular symmetry |
403 |
+ |
axes and small thick lines show terminal dipolar direction, central |
404 |
+ |
dipoles are not shown).} \label{fig:7} |
405 |
+ |
\end{figure} |
406 |
+ |
|
407 |
+ |
\begin{figure} |
408 |
+ |
\begin{center} |
409 |
+ |
\epsfxsize=3in \epsfbox{fig8.ps} |
410 |
+ |
\end{center} |
411 |
+ |
\caption {Snapshot of molecular configuration for a system of 1372 |
412 |
+ |
G-B molecules with single transverse outward pointing dipole, having |
413 |
+ |
$d^{*}=1.0$, $\mu^{*}=1.0$ (fine lines are molecular symmetry axes |
414 |
+ |
and small thick lines show terminal dipolar direction).} |
415 |
+ |
\label{fig:8} |
416 |
+ |
\end{figure} |
417 |
+ |
|
418 |
+ |
Starting from an isotropic configuaration of polar Gay-Berne |
419 |
+ |
molecules, we could successfully simulate perfect bilayer, antiphase |
420 |
+ |
and monolayer structure. To break the up-down symmetry i.e. the |
421 |
+ |
nonequivalence of directions ${\bf \hat {n}}$ and ${ -\bf \hat{n}}$, |
422 |
+ |
the molecules should have permanent electric or magnetic dipoles. |
423 |
+ |
Longitudinal electric dipole interaction could not form polar |
424 |
+ |
nematic phase as orientationally disordered phase with larger |
425 |
+ |
entropy is stabler than polarly ordered phase. In fact, stronger |
426 |
+ |
central dipole moment opposes polar nematic ordering more |
427 |
+ |
effectively in case of rod-like molecules. However, polar ordering |
428 |
+ |
like bilayer $A_{2}$, interdigitated $A_{d}$, and wavy $\tilde A$ in |
429 |
+ |
smectic layers can be achieved, where adjacent layers with opposite |
430 |
+ |
polarities makes bulk phase a-polar. More so, lyotropic liquid |
431 |
+ |
crystals and bilayer bio-membranes can have polar layers. These |
432 |
+ |
arrangements appear to get favours with the shifting of longitudinal |
433 |
+ |
dipole moment to the molecular terminus, so that they can have |
434 |
+ |
anti-ferroelectric dipolar arrangement giving rise to local (within |
435 |
+ |
the sublayer) breaking of up-down symmetry along the director. |
436 |
+ |
Transverse polarity breaks two-fold rotational symmetry, which |
437 |
+ |
favours more in-plane polar order. However, the molecular origin of |
438 |
+ |
these phases requires something more which are apparent from the |
439 |
+ |
earlier simulation results. We have shown that to get perfect |
440 |
+ |
bilayer structure in a G-B system, alongwith transverse terminal |
441 |
+ |
dipole, another central dipole (or a polarizable core) is required |
442 |
+ |
so that polar head and a-polar tail of Gay-Berne molecules go to |
443 |
+ |
opposite directions within a bilayer. This gives some kind of |
444 |
+ |
clipping interactions which forbid the molecular tail go in other |
445 |
+ |
way. Moreover, we could simulate other varieties of polar smectic |
446 |
+ |
phases e.g. monolayer $A_{1}$, antiphase $\tilde A$ successfully. |
447 |
+ |
Apart from guiding chemical synthesization of ferroelectric, |
448 |
+ |
antiferroelectric liquid crystals for technological applications, |
449 |
+ |
the present study will be of scientific interest in understanding |
450 |
+ |
molecular level interactions of lyotropic liquid crystals as well as |
451 |
+ |
nature-designed bio-membranes. |
452 |
+ |
|
453 |
|
\section{\label{liquidCrystalSection:methods}Methods} |
454 |
|
|
455 |
|
\section{\label{liquidCrystalSection:resultDiscussion}Results and Discussion} |
456 |
+ |
|
457 |
+ |
\section{Conclusion} |