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Revision 2870 by tim, Tue Jun 20 13:46:10 2006 UTC vs.
Revision 2882 by tim, Fri Jun 23 21:33:52 2006 UTC

# Line 212 | Line 212 | every banana shaped molecule has been represented thre
212  
213   A series of molecular dynamics simulations were perform to study the
214   phase behavior of banana shaped liquid crystals. In each simulation,
215 < every banana shaped molecule has been represented three GB particles
216 < which is characterized by $\mu = 1,~ \nu = 2,
215 > every banana shaped molecule has been represented by three GB
216 > particles which is characterized by $\mu = 1,~ \nu = 2,
217   ~\epsilon_{e}/\epsilon_{s} = 1/5$ and $\sigma_{e}/\sigma_{s} = 3$.
218   All of the simulations begin with same equilibrated isotropic
219   configuration where 1024 molecules without dipoles were confined in
# Line 222 | Line 222 | To investigate the phase structure of the model liquid
222   barostat of 50~ps were used to equilibrate the system to desired
223   temperature and pressure.
224  
225 + \subsection{Order Parameters}
226 +
227   To investigate the phase structure of the model liquid crystal, we
228   calculated various order parameters and correlation functions.
229   Particulary, the $P_2$ order parameter allows us to estimate average
# Line 254 | Line 256 | where $X$, $Y$ and $Z$ are axis of the director frame.
256   \end{equation}
257   where $X$, $Y$ and $Z$ are axis of the director frame.
258  
259 + \subsection{Structure Properties}
260  
261 < The density correlation along the director is
262 < \begin{equation}g(z) =< \delta (z-z_{ij})>_{ij} / \pi R^{2} \rho
261 > It is more important to show the density correlation along the
262 > director
263 > \begin{equation}
264 > g(z) =< \delta (z-z_{ij})>_{ij} / \pi R^{2} \rho
265   \end{equation},
266 < where $z_{ij} = r_{ij} cos \beta_{r_{ij}}$ was measured in the
267 < director frame and $R$ is the radius of the cylindrical sampling
268 < region.
266 > where $z_{ij} = r_{ij} \dot Z$ was measured in the director frame
267 > and $R$ is the radius of the cylindrical sampling region.
268 >
269 > \subsection{Rotational Invariants}
270 >
271 > As a useful set of correlation functions to describe
272 > position-orientation correlation, rotation invariants were first
273 > applied in a spherical symmetric system to study x-ray and light
274 > scatting\cite{Blum1971}. Latterly, expansion of the orientation pair
275 > correlation in terms of rotation invariant for molecules of
276 > arbitrary shape was introduce by Stone\cite{Stone1978} and adopted
277 > by other researchers in liquid crystal studies\cite{Berardi2000}.
278  
279 + \begin{eqnarray}
280 + S_{22}^{220} (r) & = & \frac{1}{{4\sqrt 5 }} \left< \delta (r -
281 + r_{ij} )((\hat x_i  \cdot \hat x_j )^2  - (\hat x_i  \cdot \hat y_j
282 + )^2  - (\hat y_i  \cdot \hat x_j )^2  + (\hat y_i  \cdot \hat y_j
283 + )^2 ) \right. \\
284 + & & \left. - 2(\hat x_i  \cdot \hat y_j )(\hat y_i \cdot \hat x_j ) -
285 + 2(\hat x_i  \cdot \hat x_j )(\hat y_i  \cdot \hat y_j )) \right>
286 + \end{eqnarray}
287  
288 + \begin{equation}
289 + S_{00}^{221} (r) =  - \frac{{\sqrt 3 }}{{\sqrt {10} }}\left\langle
290 + {\delta (r - r_{ij} )((\hat z_i  \cdot \hat z_j )(\hat z_i  \cdot
291 + \hat z_j  \times \hat r_{ij} ))} \right\rangle
292 + \end{equation}
293 +
294   \section{Results and Conclusion}
295   \label{sec:results and conclusion}
296  
297   To investigate the molecular organization behavior due to different
298   dipolar orientation and position with respect to the center of the
299   molecule,
272
273
274
275 \section{\label{liquidCrystalSection:methods}Methods}
276
277 \section{\label{liquidCrystalSection:resultDiscussion}Results and Discussion}
278
279 \section{Conclusion}

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