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# Line 88 | Line 88 | Encoding: GBK
88    uri = {<Go to ISI>://000232532000064},
89   }
90  
91 @BOOK{Alexander1987,
92  title = {A Pattern Language: Towns, Buildings, Construction},
93  publisher = {Oxford University Press},
94  year = {1987},
95  author = {C. Alexander},
96  address = {New York},
97 }
98
99 @BOOK{Allen1987,
100  title = {Computer Simulations of Liquids},
101  publisher = {Oxford University Press},
102  year = {1987},
103  author = {M.~P. Allen and D.~J. Tildesley},
104  address = {New York},
105 }
106
91   @ARTICLE{Allison1991,
92    author = {S. A. Allison},
93    title = {A Brownian Dynamics Algorithm for Arbitrary Rigid Bodies - Application
# Line 247 | Line 231 | Encoding: GBK
231    uri = {<Go to ISI>://000221146400009},
232   }
233  
250 @ARTICLE{Barojas1973,
251  author = {J. Barojas and D. Levesque},
252  title = {Simulation of Diatomic Homonuclear Liquids},
253  journal = {Phys. Rev. A},
254  year = {1973},
255  volume = {7},
256  pages = {1092-1105},
257 }
258
234   @ARTICLE{Barth1998,
235    author = {E. Barth and T. Schlick},
236    title = {Overcoming stability limitations in biomolecular dynamics. I. Combining
# Line 430 | Line 405 | Encoding: GBK
405  
406   @ARTICLE{Berkov2005,
407    author = {D. V. Berkov and N. L. Gorn},
408 +  title = {Stochastic dynamic simulations of fast remagnetization processes:
409 +        recent advances and applications},
410 +  journal = {Journal of Magnetism and Magnetic Materials},
411 +  year = {2005},
412 +  volume = {290},
413 +  pages = {442-448},
414 +  month = {Apr},
415 +  abstract = {Numerical simulations of fast remagnetization processes using stochastic
416 +        dynamics are widely used to study various magnetic systems. In this
417 +        paper, we first address several crucial methodological problems
418 +        of such simulations: (i) the influence of finite-element discretization
419 +        on simulated dynamics, (ii) choice between Ito and Stratonovich
420 +        stochastic calculi by the solution of micromagnetic stochastic equations
421 +        of motion and (iii) non-trivial correlation properties of the random
422 +        (thermal) field. Next, we discuss several examples to demonstrate
423 +        the great potential of the Langevin dynamics for studying fast remagnetization
424 +        processes in technically relevant applications: we present numerical
425 +        analysis of equilibrium magnon spectra in patterned structures,
426 +        study thermal noise effects on the magnetization dynamics of nanoelements
427 +        in pulsed fields and show some results for a remagnetization dynamics
428 +        induced by a spin-polarized current. (c) 2004 Elsevier B.V. All
429 +        rights reserved.},
430 +  annote = {Part 1 Sp. Iss. SI 922KU Times Cited:2 Cited References Count:25},
431 +  issn = {0304-8853},
432 +  uri = {<Go to ISI>://000228837600109},
433 + }
434 +
435 + @ARTICLE{Berkov2005a,
436 +  author = {D. V. Berkov and N. L. Gorn},
437    title = {Magnetization precession due to a spin-polarized current in a thin
438          nanoelement: Numerical simulation study},
439    journal = {Physical Review B},
# Line 460 | Line 464 | Encoding: GBK
464    uri = {<Go to ISI>://000232228500058},
465   }
466  
463 @ARTICLE{Berkov2005a,
464  author = {D. V. Berkov and N. L. Gorn},
465  title = {Stochastic dynamic simulations of fast remagnetization processes:
466        recent advances and applications},
467  journal = {Journal of Magnetism and Magnetic Materials},
468  year = {2005},
469  volume = {290},
470  pages = {442-448},
471  month = {Apr},
472  abstract = {Numerical simulations of fast remagnetization processes using stochastic
473        dynamics are widely used to study various magnetic systems. In this
474        paper, we first address several crucial methodological problems
475        of such simulations: (i) the influence of finite-element discretization
476        on simulated dynamics, (ii) choice between Ito and Stratonovich
477        stochastic calculi by the solution of micromagnetic stochastic equations
478        of motion and (iii) non-trivial correlation properties of the random
479        (thermal) field. Next, we discuss several examples to demonstrate
480        the great potential of the Langevin dynamics for studying fast remagnetization
481        processes in technically relevant applications: we present numerical
482        analysis of equilibrium magnon spectra in patterned structures,
483        study thermal noise effects on the magnetization dynamics of nanoelements
484        in pulsed fields and show some results for a remagnetization dynamics
485        induced by a spin-polarized current. (c) 2004 Elsevier B.V. All
486        rights reserved.},
487  annote = {Part 1 Sp. Iss. SI 922KU Times Cited:2 Cited References Count:25},
488  issn = {0304-8853},
489  uri = {<Go to ISI>://000228837600109},
490 }
491
467   @ARTICLE{Berkov2002,
468    author = {D. V. Berkov and N. L. Gorn and P. Gornert},
469    title = {Magnetization dynamics in nanoparticle systems: Numerical simulation
# Line 972 | Line 947 | Encoding: GBK
947    uri = {<Go to ISI>://A1997YA58700024},
948   }
949  
975 @BOOK{Gamma1994,
976  title = {Design Patterns: Elements of Reusable Object-Oriented Software},
977  publisher = {Perason Education},
978  year = {1994},
979  author = {E. Gamma, R. Helm, R. Johnson and J. Vlissides},
980  address = {London},
981  chapter = {7},
982 }
983
950   @ARTICLE{Edwards2005,
951    author = {S. A. Edwards and D. R. M. Williams},
952    title = {Stretching a single diblock copolymer in a selective solvent: Langevin
# Line 1111 | Line 1077 | Encoding: GBK
1077    uri = {<Go to ISI>://000180256300012},
1078   }
1079  
1114 @BOOK{Frenkel1996,
1115  title = {Understanding Molecular Simulation : From Algorithms to Applications},
1116  publisher = {Academic Press},
1117  year = {1996},
1118  author = {D. Frenkel and B. Smit},
1119  address = {New York},
1120 }
1121
1080   @ARTICLE{Gay1981,
1081    author = {J. G. Gay and B. J. Berne},
1082    title = {Modification of the Overlap Potential to Mimic a Linear Site-Site
# Line 1165 | Line 1123 | Encoding: GBK
1123    uri = {<Go to ISI>://000083785700002},
1124   }
1125  
1168 @BOOK{Goldstein2001,
1169  title = {Classical Mechanics},
1170  publisher = {Addison Wesley},
1171  year = {2001},
1172  author = {H. Goldstein and C. Poole and J. Safko},
1173  address = {San Francisco},
1174  edition = {3rd},
1175 }
1176
1126   @ARTICLE{Gray2003,
1127    author = {J. J. Gray and S. Moughon and C. Wang and O. Schueler-Furman and
1128          B. Kuhlman and C. A. Rohl and D. Baker},
# Line 1410 | Line 1359 | Encoding: GBK
1359    uri = {<Go to ISI>://A1992JU25100002},
1360   }
1361  
1413 @BOOK{Hockney1981,
1414  title = {Computer Simulation Using Particles},
1415  publisher = {McGraw-Hill},
1416  year = {1981},
1417  author = {R.W. Hockney and J.W. Eastwood},
1418  address = {New York},
1419 }
1420
1362   @ARTICLE{Hoover1985,
1363    author = {W. G. Hoover},
1364    title = {Canonical Dynamics - Equilibrium Phase-Space Distributions},
# Line 1537 | Line 1478 | Encoding: GBK
1478    uri = {<Go to ISI>://000166676100020},
1479   }
1480  
1540 @ARTICLE{Torre1977,
1541  author = {Jose Garcia De La Torre, V.A. Bloomfield},
1542  title = {Hydrodynamic properties of macromolecular complexes. I. Translation},
1543  journal = {Biopolymers},
1544  year = {1977},
1545  volume = {16},
1546  pages = {1747-1763},
1547 }
1548
1481   @ARTICLE{Kane2000,
1482    author = {C. Kane and J. E. Marsden and M. Ortiz and M. West},
1483    title = {Variational integrators and the Newmark algorithm for conservative
# Line 1699 | Line 1631 | Encoding: GBK
1631    annote = {Part 1 646CM Times Cited:15 Cited References Count:38},
1632    issn = {1063-651X},
1633    uri = {<Go to ISI>://000181017300042},
1702 }
1703
1704 @BOOK{Leach2001,
1705  title = {Molecular Modeling: Principles and Applications},
1706  publisher = {Pearson Educated Limited},
1707  year = {2001},
1708  author = {A. Leach},
1709  address = {Harlow, England},
1710  edition = {2nd},
1634   }
1635  
1636   @ARTICLE{Leimkuhler1999,
# Line 1738 | Line 1661 | Encoding: GBK
1661    uri = {<Go to ISI>://000080466800007},
1662   }
1663  
1741 @BOOK{Leimkuhler2004,
1742  title = {Simulating Hamiltonian Dynamics},
1743  publisher = {Cambridge University Press},
1744  year = {2004},
1745  author = {B. Leimkuhler and S. Reich},
1746  address = {Cambridge},
1747 }
1748
1664   @ARTICLE{Levelut1981,
1665    author = {A. M. Levelut and R. J. Tarento and F. Hardouin and M. F. Achard
1666          and G. Sigaud},
# Line 1836 | Line 1751 | Encoding: GBK
1751    uri = {<Go to ISI>://A1994QF46400002},
1752   }
1753  
1839 @BOOK{Marion1990,
1840  title = {Classical Dynamics of Particles and Systems},
1841  publisher = {Academic Press},
1842  year = {1990},
1843  author = {J.~B. Marion},
1844  address = {New York},
1845  edition = {2rd},
1846 }
1847
1754   @ARTICLE{Marrink1994,
1755    author = {S. J. Marrink and H. J. C. Berendsen},
1756    title = {Simulation of Water Transport through a Lipid-Membrane},
# Line 1951 | Line 1857 | Encoding: GBK
1857    uri = {<Go to ISI>://000224325600001},
1858   }
1859  
1954 @ARTICLE{McLachlan1993,
1955  author = {R.~I McLachlan},
1956  title = {Explicit Lie-Poisson integration and the Euler equations},
1957  journal = {prl},
1958  year = {1993},
1959  volume = {71},
1960  pages = {3043-3046},
1961 }
1962
1860   @ARTICLE{McLachlan1998,
1861    author = {R. I. McLachlan and G. R. W. Quispel},
1862    title = {Generating functions for dynamical systems with symmetries, integrals,
# Line 2117 | Line 2014 | Encoding: GBK
2014    uri = {<Go to ISI>://000174410500001},
2015   }
2016  
2120 @ARTICLE{Metropolis1949,
2121  author = {N. Metropolis and S. Ulam},
2122  title = {The $\mbox{Monte Carlo}$ Method},
2123  journal = {J. Am. Stat. Ass.},
2124  year = {1949},
2125  volume = {44},
2126  pages = {335-341},
2127 }
2128
2017   @ARTICLE{Mielke2004,
2018    author = {S. P. Mielke and W. H. Fink and V. V. Krishnan and N. Gronbech-Jensen
2019          and C. J. Benham},
# Line 2269 | Line 2157 | Encoding: GBK
2157    uri = {<Go to ISI>://000172129300049},
2158   }
2159  
2272 @BOOK{Olver1986,
2273  title = {Applications of Lie groups to differential equatitons},
2274  publisher = {Springer},
2275  year = {1986},
2276  author = {P.J. Olver},
2277  address = {New York},
2278 }
2279
2160   @ARTICLE{Omelyan1998,
2161    author = {I. P. Omelyan},
2162    title = {On the numerical integration of motion for rigid polyatomics: The
# Line 2497 | Line 2377 | Encoding: GBK
2377    annote = {Akb93 Times Cited:71 Cited References Count:12},
2378    issn = {0021-9991},
2379    uri = {<Go to ISI>://A1985AKB9300008},
2500 }
2501
2502 @ARTICLE{Rotne1969,
2503  author = {F. Perrin},
2504  title = {Variational treatment of hydrodynamic interaction in polymers},
2505  journal = {J. Chem. Phys.},
2506  year = {1969},
2507  volume = {50},
2508  pages = {4831¨C4837},
2509 }
2510
2511 @ARTICLE{Perrin1936,
2512  author = {F. Perrin},
2513  title = {Mouvement brownien d'un ellipsoid(II). Rotation libre et depolarisation
2514        des fluorescences. Translation et diffusion de moleculese ellipsoidales},
2515  journal = {J. Phys. Radium},
2516  year = {1936},
2517  volume = {7},
2518  pages = {1-11},
2380   }
2381  
2521 @ARTICLE{Perrin1934,
2522  author = {F. Perrin},
2523  title = {Mouvement brownien d'un ellipsoid(I). Dispersion dielectrique pour
2524        des molecules ellipsoidales},
2525  journal = {J. Phys. Radium},
2526  year = {1934},
2527  volume = {5},
2528  pages = {497-511},
2529 }
2530
2382   @ARTICLE{Petrache1998,
2383    author = {H. I. Petrache and S. Tristram-Nagle and J. F. Nagle},
2384    title = {Fluid phase structure of EPC and DMPC bilayers},
# Line 2559 | Line 2410 | Encoding: GBK
2410    uri = {<Go to ISI>://000076497600007},
2411   }
2412  
2562 @ARTICLE{Powles1973,
2563  author = {J.~G. Powles},
2564  title = {A general ellipsoid can not always serve as a modle for the rotational
2565        diffusion properties of arbitrary shaped rigid molecules},
2566  journal = {Advan. Phys.},
2567  year = {1973},
2568  volume = {22},
2569  pages = {1-56},
2570 }
2571
2413   @ARTICLE{Recio2004,
2414    author = {J. Fernandez-Recio and M. Totrov and R. Abagyan},
2415    title = {Identification of protein-protein interaction sites from docking
# Line 3066 | Line 2907 | Encoding: GBK
2907    annote = {943DN Times Cited:3 Cited References Count:26},
2908    issn = {0021-9606},
2909    uri = {<Go to ISI>://000230332400077},
3069 }
3070
3071 @BOOK{Tolman1979,
3072  title = {The Principles of Statistical Mechanics},
3073  publisher = {Dover Publications, Inc.},
3074  year = {1979},
3075  author = {R.~C. Tolman},
3076  address = {New York},
3077  chapter = {2},
3078  pages = {19-22},
2910   }
2911  
2912   @ARTICLE{Tu1995,
# Line 3139 | Line 2970 | Encoding: GBK
2970    uri = {<Go to ISI>://A1992JE89100044},
2971   }
2972  
3142 @BOOK{Varadarajan1974,
3143  title = {Lie groups, Lie algebras, and their representations},
3144  publisher = {Prentice-Hall},
3145  year = {1974},
3146  author = {V.S. Varadarajan},
3147  address = {New York},
3148 }
3149
3150 @ARTICLE{Wegener1979,
3151  author = {W.~A. Wegener, V.~J. Koester and R.~M. Dowben},
3152  title = {A general ellipsoid can not always serve as a modle for the rotational
3153        diffusion properties of arbitrary shaped rigid molecules},
3154  journal = {Proc. Natl. Acad. Sci.},
3155  year = {1979},
3156  volume = {76},
3157  pages = {6356-6360},
3158  number = {12},
3159 }
3160
3161 @ARTICLE{Wilson2006,
3162  author = {G.~V. Wilson },
3163  title = {Where's the Real Bottleneck in Scientific Computing?},
3164  journal = {American Scientist},
3165  year = {2006},
3166  volume = {94},
3167 }
3168
2973   @ARTICLE{Withers2003,
2974    author = {I. M. Withers},
2975    title = {Effects of longitudinal quadrupoles on the phase behavior of a Gay-Berne

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