--- trunk/tengDissertation/dissertation.bib 2006/06/09 02:41:58 2839 +++ trunk/tengDissertation/dissertation.bib 2006/06/09 02:54:01 2840 @@ -88,6 +88,22 @@ Encoding: GBK uri = {://000232532000064}, } +@BOOK{Alexander1987, + title = {A Pattern Language: Towns, Buildings, Construction}, + publisher = {Oxford University Press}, + year = {1987}, + author = {C. Alexander}, + address = {New York}, +} + +@BOOK{Allen1987, + title = {Computer Simulations of Liquids}, + publisher = {Oxford University Press}, + year = {1987}, + author = {M.~P. Allen and D.~J. Tildesley}, + address = {New York}, +} + @ARTICLE{Allison1991, author = {S. A. Allison}, title = {A Brownian Dynamics Algorithm for Arbitrary Rigid Bodies - Application @@ -229,6 +245,15 @@ Encoding: GBK annote = {816YY Times Cited:8 Cited References Count:35}, issn = {0021-9606}, uri = {://000221146400009}, +} + +@ARTICLE{Barojas1973, + author = {J. Barojas and D. Levesque}, + title = {Simulation of Diatomic Homonuclear Liquids}, + journal = {Phys. Rev. A}, + year = {1973}, + volume = {7}, + pages = {1092-1105}, } @ARTICLE{Barth1998, @@ -404,35 +429,6 @@ Encoding: GBK } @ARTICLE{Berkov2005, - author = {D. V. Berkov and N. L. Gorn}, - title = {Stochastic dynamic simulations of fast remagnetization processes: - recent advances and applications}, - journal = {Journal of Magnetism and Magnetic Materials}, - year = {2005}, - volume = {290}, - pages = {442-448}, - month = {Apr}, - abstract = {Numerical simulations of fast remagnetization processes using stochastic - dynamics are widely used to study various magnetic systems. In this - paper, we first address several crucial methodological problems - of such simulations: (i) the influence of finite-element discretization - on simulated dynamics, (ii) choice between Ito and Stratonovich - stochastic calculi by the solution of micromagnetic stochastic equations - of motion and (iii) non-trivial correlation properties of the random - (thermal) field. Next, we discuss several examples to demonstrate - the great potential of the Langevin dynamics for studying fast remagnetization - processes in technically relevant applications: we present numerical - analysis of equilibrium magnon spectra in patterned structures, - study thermal noise effects on the magnetization dynamics of nanoelements - in pulsed fields and show some results for a remagnetization dynamics - induced by a spin-polarized current. (c) 2004 Elsevier B.V. All - rights reserved.}, - annote = {Part 1 Sp. Iss. SI 922KU Times Cited:2 Cited References Count:25}, - issn = {0304-8853}, - uri = {://000228837600109}, -} - -@ARTICLE{Berkov2005a, author = {D. V. Berkov and N. L. Gorn}, title = {Magnetization precession due to a spin-polarized current in a thin nanoelement: Numerical simulation study}, @@ -464,6 +460,35 @@ Encoding: GBK uri = {://000232228500058}, } +@ARTICLE{Berkov2005a, + author = {D. V. Berkov and N. L. Gorn}, + title = {Stochastic dynamic simulations of fast remagnetization processes: + recent advances and applications}, + journal = {Journal of Magnetism and Magnetic Materials}, + year = {2005}, + volume = {290}, + pages = {442-448}, + month = {Apr}, + abstract = {Numerical simulations of fast remagnetization processes using stochastic + dynamics are widely used to study various magnetic systems. In this + paper, we first address several crucial methodological problems + of such simulations: (i) the influence of finite-element discretization + on simulated dynamics, (ii) choice between Ito and Stratonovich + stochastic calculi by the solution of micromagnetic stochastic equations + of motion and (iii) non-trivial correlation properties of the random + (thermal) field. Next, we discuss several examples to demonstrate + the great potential of the Langevin dynamics for studying fast remagnetization + processes in technically relevant applications: we present numerical + analysis of equilibrium magnon spectra in patterned structures, + study thermal noise effects on the magnetization dynamics of nanoelements + in pulsed fields and show some results for a remagnetization dynamics + induced by a spin-polarized current. (c) 2004 Elsevier B.V. All + rights reserved.}, + annote = {Part 1 Sp. Iss. SI 922KU Times Cited:2 Cited References Count:25}, + issn = {0304-8853}, + uri = {://000228837600109}, +} + @ARTICLE{Berkov2002, author = {D. V. Berkov and N. L. Gorn and P. Gornert}, title = {Magnetization dynamics in nanoparticle systems: Numerical simulation @@ -501,6 +526,16 @@ Encoding: GBK year = {1980}, volume = {19}, pages = {751-766}, +} + +@ARTICLE{Brenner1967, + author = {H. Brenner }, + title = {Coupling between the Translational and Rotational Brownian Motions + of Rigid Particles of Arbitrary shape}, + journal = {J. Collid. Int. Sci.}, + year = {1967}, + volume = {23}, + pages = {407-436}, } @ARTICLE{Brunger1984, @@ -945,6 +980,15 @@ Encoding: GBK annote = {Ya587 Times Cited:35 Cited References Count:32}, issn = {0021-9606}, uri = {://A1997YA58700024}, +} + +@BOOK{Gamma1994, + title = {Design Patterns: Elements of Reusable Object-Oriented Software}, + publisher = {Perason Education}, + year = {1994}, + author = {E. Gamma, R. Helm, R. Johnson and J. Vlissides}, + address = {London}, + chapter = {7}, } @ARTICLE{Edwards2005, @@ -1075,6 +1119,14 @@ Encoding: GBK annote = {633AD Times Cited:2 Cited References Count:43}, issn = {0006-3495}, uri = {://000180256300012}, +} + +@BOOK{Frenkel1996, + title = {Understanding Molecular Simulation : From Algorithms to Applications}, + publisher = {Academic Press}, + year = {1996}, + author = {D. Frenkel and B. Smit}, + address = {New York}, } @ARTICLE{Gay1981, @@ -1121,6 +1173,15 @@ Encoding: GBK annote = {257MM Times Cited:2 Cited References Count:82}, issn = {1022-1344}, uri = {://000083785700002}, +} + +@BOOK{Goldstein2001, + title = {Classical Mechanics}, + publisher = {Addison Wesley}, + year = {2001}, + author = {H. Goldstein and C. Poole and J. Safko}, + address = {San Francisco}, + edition = {3rd}, } @ARTICLE{Gray2003, @@ -1359,6 +1420,14 @@ Encoding: GBK uri = {://A1992JU25100002}, } +@BOOK{Hockney1981, + title = {Computer Simulation Using Particles}, + publisher = {McGraw-Hill}, + year = {1981}, + author = {R.W. Hockney and J.W. Eastwood}, + address = {New York}, +} + @ARTICLE{Hoover1985, author = {W. G. Hoover}, title = {Canonical Dynamics - Equilibrium Phase-Space Distributions}, @@ -1476,6 +1545,15 @@ Encoding: GBK annote = {397CQ Times Cited:14 Cited References Count:36}, issn = {0021-9606}, uri = {://000166676100020}, +} + +@ARTICLE{Torre1977, + author = {Jose Garcia De La Torre, V.A. Bloomfield}, + title = {Hydrodynamic properties of macromolecular complexes. I. Translation}, + journal = {Biopolymers}, + year = {1977}, + volume = {16}, + pages = {1747-1763}, } @ARTICLE{Kane2000, @@ -1631,6 +1709,15 @@ Encoding: GBK annote = {Part 1 646CM Times Cited:15 Cited References Count:38}, issn = {1063-651X}, uri = {://000181017300042}, +} + +@BOOK{Leach2001, + title = {Molecular Modeling: Principles and Applications}, + publisher = {Pearson Educated Limited}, + year = {2001}, + author = {A. Leach}, + address = {Harlow, England}, + edition = {2nd}, } @ARTICLE{Leimkuhler1999, @@ -1661,6 +1748,14 @@ Encoding: GBK uri = {://000080466800007}, } +@BOOK{Leimkuhler2004, + title = {Simulating Hamiltonian Dynamics}, + publisher = {Cambridge University Press}, + year = {2004}, + author = {B. Leimkuhler and S. Reich}, + address = {Cambridge}, +} + @ARTICLE{Levelut1981, author = {A. M. Levelut and R. J. Tarento and F. Hardouin and M. F. Achard and G. Sigaud}, @@ -1749,6 +1844,15 @@ Encoding: GBK annote = {Qf464 Times Cited:50 Cited References Count:20}, issn = {0892-7022}, uri = {://A1994QF46400002}, +} + +@BOOK{Marion1990, + title = {Classical Dynamics of Particles and Systems}, + publisher = {Academic Press}, + year = {1990}, + author = {J.~B. Marion}, + address = {New York}, + edition = {2rd}, } @ARTICLE{Marrink1994, @@ -1855,6 +1959,15 @@ Encoding: GBK annote = {860EP Times Cited:2 Cited References Count:52}, issn = {0098-3500}, uri = {://000224325600001}, +} + +@ARTICLE{McLachlan1993, + author = {R.~I McLachlan}, + title = {Explicit Lie-Poisson integration and the Euler equations}, + journal = {prl}, + year = {1993}, + volume = {71}, + pages = {3043-3046}, } @ARTICLE{McLachlan1998, @@ -2012,6 +2125,15 @@ Encoding: GBK annote = {531HT Times Cited:12 Cited References Count:37}, issn = {0267-8292}, uri = {://000174410500001}, +} + +@ARTICLE{Metropolis1949, + author = {N. Metropolis and S. Ulam}, + title = {The $\mbox{Monte Carlo}$ Method}, + journal = {J. Am. Stat. Ass.}, + year = {1949}, + volume = {44}, + pages = {335-341}, } @ARTICLE{Mielke2004, @@ -2155,6 +2277,14 @@ Encoding: GBK annote = {491UW Times Cited:48 Cited References Count:25}, issn = {0021-9606}, uri = {://000172129300049}, +} + +@BOOK{Olver1986, + title = {Applications of Lie groups to differential equatitons}, + publisher = {Springer}, + year = {1986}, + author = {P.J. Olver}, + address = {New York}, } @ARTICLE{Omelyan1998, @@ -2377,8 +2507,47 @@ Encoding: GBK annote = {Akb93 Times Cited:71 Cited References Count:12}, issn = {0021-9991}, uri = {://A1985AKB9300008}, +} + +@ARTICLE{Rotne1969, + author = {F. Perrin}, + title = {Variational treatment of hydrodynamic interaction in polymers}, + journal = {J. Chem. Phys.}, + year = {1969}, + volume = {50}, + pages = {4831¨C4837}, +} + +@ARTICLE{Perrin1936, + author = {F. Perrin}, + title = {Mouvement brownien d'un ellipsoid(II). Rotation libre et depolarisation + des fluorescences. Translation et diffusion de moleculese ellipsoidales}, + journal = {J. Phys. Radium}, + year = {1936}, + volume = {7}, + pages = {1-11}, } +@ARTICLE{Perrin1934, + author = {F. Perrin}, + title = {Mouvement brownien d'un ellipsoid(I). Dispersion dielectrique pour + des molecules ellipsoidales}, + journal = {J. Phys. Radium}, + year = {1934}, + volume = {5}, + pages = {497-511}, +} + +@ARTICLE{Petrache2000, + author = {H.~I. Petrache and S.~W. Dodd and M.~F. Brown}, + title = {Area per Lipid and Acyl Length Distributions in Fluid Phosphatidylcholines + Determined by $^2\text{H}$ {\sc nmr} Spectroscopy}, + journal = {Biophysical Journal}, + year = {2000}, + volume = {79}, + pages = {3172-3192}, +} + @ARTICLE{Petrache1998, author = {H. I. Petrache and S. Tristram-Nagle and J. F. Nagle}, title = {Fluid phase structure of EPC and DMPC bilayers}, @@ -2408,6 +2577,16 @@ Encoding: GBK annote = {130AT Times Cited:98 Cited References Count:39}, issn = {0009-3084}, uri = {://000076497600007}, +} + +@ARTICLE{Powles1973, + author = {J.~G. Powles}, + title = {A general ellipsoid can not always serve as a modle for the rotational + diffusion properties of arbitrary shaped rigid molecules}, + journal = {Advan. Phys.}, + year = {1973}, + volume = {22}, + pages = {1-56}, } @ARTICLE{Recio2004, @@ -2909,6 +3088,16 @@ Encoding: GBK uri = {://000230332400077}, } +@BOOK{Tolman1979, + title = {The Principles of Statistical Mechanics}, + publisher = {Dover Publications, Inc.}, + year = {1979}, + author = {R.~C. Tolman}, + address = {New York}, + chapter = {2}, + pages = {19-22}, +} + @ARTICLE{Tu1995, author = {K. Tu and D. J. Tobias and M. L. Klein}, title = {Constant pressure and temperature molecular dynamics simulation of @@ -2970,6 +3159,33 @@ Encoding: GBK uri = {://A1992JE89100044}, } +@BOOK{Varadarajan1974, + title = {Lie groups, Lie algebras, and their representations}, + publisher = {Prentice-Hall}, + year = {1974}, + author = {V.S. Varadarajan}, + address = {New York}, +} + +@ARTICLE{Wegener1979, + author = {W.~A. Wegener, V.~J. Koester and R.~M. Dowben}, + title = {A general ellipsoid can not always serve as a modle for the rotational + diffusion properties of arbitrary shaped rigid molecules}, + journal = {Proc. Natl. Acad. Sci.}, + year = {1979}, + volume = {76}, + pages = {6356-6360}, + number = {12}, +} + +@ARTICLE{Wilson2006, + author = {G.~V. Wilson }, + title = {Where's the Real Bottleneck in Scientific Computing?}, + journal = {American Scientist}, + year = {2006}, + volume = {94}, +} + @ARTICLE{Withers2003, author = {I. M. Withers}, title = {Effects of longitudinal quadrupoles on the phase behavior of a Gay-Berne