| 14 |
|
@string{mp = "Mol. Phys."} |
| 15 |
|
@string{pnas = "Proc. Natl. Acad. Sci. USA"} |
| 16 |
|
@string{jacs = "J. Am. Chem. Soc."} |
| 17 |
+ |
@string{jmb = "J. Mol. Biol."} |
| 18 |
+ |
|
| 19 |
|
|
| 20 |
|
@Book{Berne90, |
| 21 |
|
author = {B.~J. Berne and R. Pecora}, |
| 2082 |
|
publisher = {Perason Education}, |
| 2083 |
|
year = 1994, |
| 2084 |
|
address = {London}, |
| 2083 |
– |
pages = {199-206} |
| 2085 |
|
} |
| 2086 |
|
|
| 2087 |
|
@Book{alexander, |
| 2104 |
|
Author = {M.~A. Meineke and C.~F. {Vardeman II} and T. Lin and C.~J. Fennell and J.~D. Gezelter}, |
| 2105 |
|
Date-Modified = {2006-03-05 12:37:31 -0500}, |
| 2106 |
|
Journal = {J. Comp. Chem.}, |
| 2106 |
– |
Local-Url = {file://localhost/Users/cfennell/Documents/pdf_files/MyPapers/Meineke_OOPSE_05.pdf}, |
| 2107 |
|
Pages = {252-271}, |
| 2108 |
|
Title = {OOPSE: An Open Source Object-Oriented Parallel Simulation Engine for Molecular Dynamics}, |
| 2109 |
|
Volume = 26, |
| 2110 |
|
Year = 2005 |
| 2111 |
+ |
} |
| 2112 |
+ |
|
| 2113 |
+ |
@article{Matthey05, |
| 2114 |
+ |
Author = {T. Matthey, T. Cickovski and \textit{et al}}, |
| 2115 |
+ |
Date-Modified = {2006-03-05 12:37:31 -0500}, |
| 2116 |
+ |
Journal = {ACM Transactions on Mathematical Software}, |
| 2117 |
+ |
Pages = {237-265}, |
| 2118 |
+ |
Title = {ProtoMol, an Object-Oriented Framework for Prototyping Novel Algorithms for Molecular Dynamics}, |
| 2119 |
+ |
Volume = 20, |
| 2120 |
+ |
Year = 2004 |
| 2121 |
+ |
} |
| 2122 |
+ |
|
| 2123 |
+ |
@Book{tolman79, |
| 2124 |
+ |
author = {R.~C. Tolman}, |
| 2125 |
+ |
title = {The Principles of Statistical Mechanics}, |
| 2126 |
+ |
chapter = 2, |
| 2127 |
+ |
publisher = {Dover Publications, Inc.}, |
| 2128 |
+ |
year = 1979, |
| 2129 |
+ |
address = {New York}, |
| 2130 |
+ |
pages = {19-22} |
| 2131 |
|
} |
| 2132 |
+ |
|
| 2133 |
+ |
@Book{Marion90, |
| 2134 |
+ |
author = {J.~B. Marion}, |
| 2135 |
+ |
title = {Classical Dynamics of Particles and Systems}, |
| 2136 |
+ |
publisher = {Academic Press}, |
| 2137 |
+ |
year = 1990, |
| 2138 |
+ |
address = {New York}, |
| 2139 |
+ |
edition = {2rd} |
| 2140 |
+ |
} |
| 2141 |
+ |
|
| 2142 |
+ |
@Book{Leimkuhler04, |
| 2143 |
+ |
author = {B. Leimkuhler and S. Reich}, |
| 2144 |
+ |
title = {Simulating Hamiltonian Dynamics}, |
| 2145 |
+ |
publisher = {Cambridge University Press}, |
| 2146 |
+ |
year = 2004, |
| 2147 |
+ |
address = {Cambridge} |
| 2148 |
+ |
} |
| 2149 |
+ |
|
| 2150 |
+ |
@Article{Gray03, |
| 2151 |
+ |
author = {J.~J Gray,S. Moughon, C. Wang }, |
| 2152 |
+ |
title = {Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations}, |
| 2153 |
+ |
journal = {jmb}, |
| 2154 |
+ |
year = 2003, |
| 2155 |
+ |
volume = 331, |
| 2156 |
+ |
pages = {281-299} |
| 2157 |
+ |
} |
| 2158 |
+ |
|
| 2159 |
+ |
@Article{McLachlan93, |
| 2160 |
+ |
author = {R.~I McLachlan}, |
| 2161 |
+ |
title = {Explicit Lie-Poisson integration and the Euler equations}, |
| 2162 |
+ |
journal = {prl}, |
| 2163 |
+ |
year = 1993, |
| 2164 |
+ |
volume = 71, |
| 2165 |
+ |
pages = {3043-3046} |
| 2166 |
+ |
} |
| 2167 |
+ |
@ARTICLE{Wegener79, |
| 2168 |
+ |
AUTHOR = {W.~A. Wegener, V.~J. Koester and R.~M. Dowben}, |
| 2169 |
+ |
TITLE = {A general ellipsoid can not always serve as a modle for the rotational diffusion properties of arbitrary shaped rigid molecules}, |
| 2170 |
+ |
JOURNAL = {Proc. Natl. Acad. Sci.}, |
| 2171 |
+ |
YEAR = {1979}, |
| 2172 |
+ |
volume = {76}, |
| 2173 |
+ |
number = {12}, |
| 2174 |
+ |
pages = {6356-6360} |
| 2175 |
+ |
} |
| 2176 |
+ |
|
| 2177 |
+ |
@ARTICLE{Powles73, |
| 2178 |
+ |
AUTHOR = {J.~G. Powles}, |
| 2179 |
+ |
TITLE = {A general ellipsoid can not always serve as a modle for the rotational diffusion properties of arbitrary shaped rigid molecules}, |
| 2180 |
+ |
JOURNAL = {Advan. Phys.}, |
| 2181 |
+ |
YEAR = {1973}, |
| 2182 |
+ |
volume = {22}, |
| 2183 |
+ |
pages = {1-56} |
| 2184 |
+ |
} |
