| 1 |
< |
\documentclass[nosummary,dvips,noindentfirst]{ndthesis} |
| 2 |
< |
\usepackage{graphicx} |
| 1 |
> |
\documentclass[nosummary]{ndthesis} |
| 2 |
> |
|
| 3 |
|
\usepackage[tbtags]{amsmath} |
| 4 |
< |
\usepackage{amsmath, bm} |
| 4 |
> |
\usepackage{amsmath,bm} |
| 5 |
|
\usepackage{amssymb} |
| 6 |
|
\usepackage{mathrsfs} |
| 7 |
– |
\usepackage{psfrag} |
| 7 |
|
\usepackage{tabularx} |
| 8 |
+ |
\usepackage{graphicx} |
| 9 |
+ |
\usepackage{booktabs} |
| 10 |
|
\usepackage{enumitem} |
| 11 |
|
\usepackage{color} |
| 12 |
|
\usepackage{listings} |
| 14 |
|
%\usepackage from oopseDoc.tex |
| 15 |
|
\usepackage{times} |
| 16 |
|
\usepackage{setspace} |
| 17 |
< |
\usepackage{tabularx} |
| 18 |
< |
\usepackage{longtable} |
| 19 |
< |
\lstset{language=C++,frame=TB,basicstyle=\small\ttfamily, % |
| 20 |
< |
xleftmargin=0in, xrightmargin=0in, %captionpos=b,% breaklines=true, % |
| 21 |
< |
abovecaptionskip=0.5cm, belowcaptionskip=0.5cm} |
| 21 |
< |
\renewcommand{\lstlistingname}{Scheme} |
| 17 |
> |
%\usepackage{longtable} |
| 18 |
> |
%\lstset{language=C++,frame=TB,basicstyle=\small\ttfamily, % |
| 19 |
> |
% xleftmargin=0in, xrightmargin=0in, %captionpos=b,% breaklines=true, % |
| 20 |
> |
% abovecaptionskip=0.5cm, belowcaptionskip=0.5cm} |
| 21 |
> |
%\renewcommand{\lstlistingname}{Scheme} |
| 22 |
|
\includeonly{preview} |
| 23 |
|
|
| 24 |
|
\begin{document} |
| 35 |
|
\newcolumntype{H}{p{0.75in}} |
| 36 |
|
\newcolumntype{I}{p{5in}} |
| 37 |
|
|
| 38 |
< |
\renewcommand{\lstlistlistingname}{SCHEMES} |
| 39 |
< |
\renewcommand{\lstlistingname}{Scheme} |
| 38 |
> |
%\renewcommand{\lstlistlistingname}{SCHEMES} |
| 39 |
> |
%\renewcommand{\lstlistingname}{Scheme} |
| 40 |
|
\frontmatter |
| 41 |
|
|
| 42 |
|
\work{Dissertation} % Change to ``Thesis'' for Master's thesis |
| 43 |
< |
\title{Algorithms for modeling the dynamics and phase transitions of lipid bilayers} |
| 43 |
> |
\title{ALGORITHMS FOR MODELING THE DYNAMICS AND PHASE TRANSITIONS OF LIPID BILAYERS} |
| 44 |
|
\author{Xiuquan Sun} |
| 45 |
|
\degprior{B.S., M.S.} % All previously earned degrees |
| 46 |
|
\degaward{Doctor of Philosophy} % What this paper is for |
| 56 |
|
|
| 57 |
|
\begin{dedication} |
| 58 |
|
|
| 59 |
< |
To my family. |
| 59 |
> |
To my wife, for her unconditional support, and to my family, for their |
| 60 |
> |
providence of inspiriting happiness. |
| 61 |
|
|
| 62 |
|
\end{dedication} |
| 63 |
|
|
| 64 |
|
\tableofcontents |
| 65 |
|
\listoffigures % If you don't have any figures or tables, comment |
| 66 |
|
\listoftables % out these two lines. |
| 67 |
< |
\lstlistoflistings |
| 67 |
> |
%\lstlistoflistings |
| 68 |
|
|
| 69 |
|
\begin{acknowledge} % acknowledgments go here |
| 70 |
|
|
| 71 |
< |
I would like to thank my advisor, Dr. Gezelter for his inspiring and |
| 72 |
< |
encouraging way to guide me to a deeper understanding of molecular |
| 73 |
< |
modeling. Without his encouragement and constant guidance, I could not |
| 74 |
< |
have finished this dissertation. I am also grateful to my colleagues |
| 75 |
< |
Charles F.~Vardeman II, Christopher J.~Fennell, Teng Lin, Yang Zheng, |
| 76 |
< |
Kyle Daily, Kyle S.~Haygarth, Matthew A.~Meineke, Dan Combest, Pat |
| 77 |
< |
Conforti, and Megan Sprague, who were always here for technical help |
| 78 |
< |
and moral support. Last, but not least, I thank my family: my fater, |
| 79 |
< |
Jianguo Sun, and my mother, Yumei Lin, for unconditional support and |
| 80 |
< |
encouragement to pursue my dreams, even when they went beyond |
| 81 |
< |
boundaries of language and geography. My wife, Yingxin Jiang, for her |
| 81 |
< |
understanding and love during the past few years. Her support and |
| 82 |
< |
encouragement was in the end what made this dissertation possible. |
| 71 |
> |
I would like to thank my advisor, J.~Daniel Gezelter, who guided me |
| 72 |
> |
into the field of my interests, helped me complete all of the work |
| 73 |
> |
with his great patience and broad knowledge. I am also grateful to my |
| 74 |
> |
colleagues Teng Lin, Charles F.~Vardeman II, Shenyu Kuang, Chunlei Li, |
| 75 |
> |
Christie Puglis, Patrick Holvey, Matthew A.~Meineke, Christopher |
| 76 |
> |
J.~Fennell, Yang Zheng, Kyle Daily, Kyle S.~Haygarth, Jennifer Morton, |
| 77 |
> |
who were always here for technical support and helpful |
| 78 |
> |
suggestions. Finally, I would like to thank my family: my father, |
| 79 |
> |
Jianguo Sun, and my mother, Yumei Lin, for their understanding and |
| 80 |
> |
support on the distant other side of the ocean. And my wife, Yingxin, |
| 81 |
> |
this dissertation could not have been finished without her love. |
| 82 |
|
|
| 83 |
|
\end{acknowledge} |
| 84 |
|
|
