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root/group/trunk/xDissertation/phdPreamble.tex
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Committed: Wed Apr 16 21:56:34 2008 UTC (17 years ago) by xsun
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# Content
1 \documentclass[nosummary]{ndthesis}
2
3 \usepackage[tbtags]{amsmath}
4 \usepackage{amsmath,bm}
5 \usepackage{amssymb}
6 \usepackage{mathrsfs}
7 \usepackage{tabularx}
8 \usepackage{graphicx}
9 \usepackage{booktabs}
10 \usepackage{enumitem}
11 \usepackage{color}
12 \usepackage{listings}
13 \usepackage{cite}
14 %\usepackage from oopseDoc.tex
15 \usepackage{times}
16 \usepackage{setspace}
17 %\usepackage{longtable}
18 %\lstset{language=C++,frame=TB,basicstyle=\small\ttfamily, %
19 % xleftmargin=0in, xrightmargin=0in, %captionpos=b,% breaklines=true, %
20 % abovecaptionskip=0.5cm, belowcaptionskip=0.5cm}
21 %\renewcommand{\lstlistingname}{Scheme}
22 \includeonly{preview}
23
24 \begin{document}
25
26 %\newcolumntype{A}{p{1.5in}}
27 %\newcolumntype{B}{p{0.75in}}
28 %\newcolumntype{C}{p{1.5in}}
29 %\newcolumntype{D}{p{2in}}
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35 %\newcolumntype{H}{p{0.75in}}
36 %\newcolumntype{I}{p{5in}}
37
38 %\renewcommand{\lstlistlistingname}{SCHEMES}
39 %\renewcommand{\lstlistingname}{Scheme}
40 \frontmatter
41
42 \work{Dissertation} % Change to ``Thesis'' for Master's thesis
43 \title{ALGORITHMS FOR MODELING THE DYNAMICS AND PHASE TRANSITIONS OF LIPID BILAYERS}
44 \author{Xiuquan Sun}
45 \degprior{B.S., M.S.} % All previously earned degrees
46 \degaward{Doctor of Philosophy} % What this paper is for
47 \advisor{J. Daniel Gezelter} % supervisor/director/advisor
48 %% \advisorB{} % second supervisor/director/advisor (if present)
49 \department{Chemistry and Biochemistry} % Dept. granting the degree
50
51 \maketitle % Uncomment to get the title page printed out
52 %% \copypage % Uncomment if you want a copyright page
53 \begin{abstract}
54
55 I present a dissertation concerning the structural properties and
56 phase behavior of lipid bilayers. The $P_{\beta'}$ ripple phase,
57 named for the periodic buckling of the membrane, is an thermotropic
58 phase which develops either from heating the gel phase ($L_{\beta'}$)
59 or cooling the fluid phase ($L_\alpha$). This phase typically exhibits
60 surface buckling with wavelengths of $100-250$ \AA~and amplitudes of
61 $10-50$ \AA. At first, I investigated the system by using Monte Carlo
62 simulations on a simple dipolar membrane model. Secondly, to obtain
63 the dynamical properties of the ripple phase of lipid membranes,
64 molecular dynamics simulations were performed on a more realistic
65 molecular-scale lipid model. Finally, an algorithm of Langevin
66 dynamics was developed to investigate the ripple phase in an implicit
67 solvent environment.
68
69 \end{abstract}
70
71 \begin{dedication}
72
73 To my wife, for her unconditional support, and to my family, for
74 providing inspiration and happiness.
75
76 \end{dedication}
77
78 \tableofcontents
79 \listoffigures % If you don't have any figures or tables, comment
80 \listoftables % out these two lines.
81 %\lstlistoflistings
82
83 \begin{acknowledge} % acknowledgments go here
84
85 I would like to thank my advisor, J.~Daniel Gezelter, who guided me
86 into the field of my interests, helped me complete all of the work
87 with his great patience and broad knowledge. I am also grateful to my
88 colleagues Teng Lin, Charles F.~Vardeman II, Shenyu Kuang, Chunlei Li,
89 Christie Puglis, Patrick Holvey, Matthew A.~Meineke, Christopher
90 J.~Fennell, Yang Zheng, Kyle Daily, Kyle S.~Haygarth, Jennifer Morton,
91 who were always here for technical support and helpful suggestions. I
92 would also like to thank the members in my advisory commitee, Gregory
93 V.~Hartland, S.~Alex Kandel, Steven Corcelli, and Dennis C.~Jacobs for
94 their disscusion and review of my dissertation. Finally, I would like
95 to thank my family: my father, Jianguo Sun, and my mother, Yumei Lin,
96 for their understanding and support on the distant side of the
97 world. And my wife, Yingxin, this dissertation could not have been
98 finished without her love.
99
100 \end{acknowledge}
101
102 \mainmatter
103
104 %\include{Introduction}
105 %\include{mc}
106 %\include{md}
107 %\include{ld}
108 %\include{Conclusion}
109 %\include{Appendix}
110 %\include{phdBib}
111