<html><head><meta http-equiv=Content-Type content="text/html; charset=utf-8"><META name="Author" content="Novell GroupWise WebAccess"></head><body style='font-family: Helvetica, Arial, sans-serif; font-size: 13px; '><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta name="Author" content="Novell GroupWise WebAccess">Hi<br><br>Please assist me with installation of openMD. <br><br>This is what I did<br><br>=================================<br>[cecil@localhost build-openMD]$ cmake ../openmd-2.2<br>-- QHULL found (include: /usr/local/include, lib: optimized;/usr/local/lib/libqhullstatic.a;debug;/usr/local/lib/libqhullstatic.a)<br>-- <br>-- ========== OpenMD Build Information ==========<br>-- Current revision ........... = Release<br>-- CMAKE_SYSTEM ............... = Linux-3.16.3-200.fc20.x86_64<br>-- ==============================================<br>-- CMAKE_BUILD_TYPE ........... = Release<br>-- CMAKE_INSTALL_PREFIX ....... = /usr/local/openmd<br>-- Build as SINGLE_PRECISION .. = OFF<br>-- CMAKE_CXX_COMPILER ......... = /usr/bin/c++<br>-- MPI_CXX_COMPILER ........... = /usr/lib64/openmpi/bin/mpicxx<br>-- MPI_CXX_INCLUDE_PATH ....... = /usr/include/openmpi-x86_64<br>-- MPI_CXX_LIBRARIES .......... = /usr/lib64/openmpi/lib/libmpi_cxx.so;/usr/lib64/openmpi/lib/libmpi.so<br>-- OPENBABEL2_ROOT ............ = <br>-- OPENBABEL2_INCLUDE_DIR ..... = /usr/include/openbabel-2.0<br>-- OPENBABEL2_LIBRARIES ....... = /usr/lib64/libopenbabel.so<br>-- QHULL_ROOT ................. = <br>-- QHULL_INCLUDE_DIR .......... = /usr/local/include<br>-- QHULL_LIBRARIES ............ = optimized;/usr/local/lib/libqhullstatic.a;debug;/usr/local/lib/libqhullstatic.a<br>-- ZLIB_ROOT .................. = <br>-- ZLIB_INCLUDE_DIR ........... = /usr/include<br>-- ZLIB_LIBRARIES ............. = /usr/lib64/libz.so<br>-- FFTW3_ROOT ................. = <br>-- FFTW3_INCLUDE_DIR .......... = /usr/include<br>-- FFTW3_LIBRARIES ............ = /usr/lib64/libfftw3.so<br>-- PERL_EXECUTABLE ............ = /usr/bin/perl<br>-- PYTHON_EXECUTABLE .......... = /usr/bin/python<br>-- DOXYGEN_EXECUTABLE ......... = /usr/bin/doxygen<br>-- <br>-- To override these options, add -D{OPTION_NAME}=... to the cmake command<br>-- Particularly useful defines are for:<br>-- <br>-- -DCMAKE_INSTALL_PREFIX=/usr/local/openmd (where OpenMD will be installed)<br>-- -DOPENBABEL2_ROOT=/path/to/openbabel<br>-- -DQHULL_ROOT=/path/to/qhull<br>-- -DFFTW3_ROOT=/path/to/fftw3<br>-- <br>-- To build and install OpenMD, enter "make" and "make install"<br>-- <br>-- Configuring done<br>-- Generating done<br>-- Build files have been written to: /home/cecil/build-openMD<br>=====================================================<br><br>when I type make i get this among others<br>...<br>...<br>...<br>lib/libopenmd_parallel.a(Problem.cpp.o): In function `QuantLib::Problem::computeGradientNormValue(OpenMD::DynamicVector<double, std::allocator<double> >&)':<br>Problem.cpp:(.text+0xc4): undefined reference to `ompi_mpi_comm_world'<br>Problem.cpp:(.text+0xca): undefined reference to `ompi_mpi_op_sum'<br>Problem.cpp:(.text+0xcf): undefined reference to `ompi_mpi_double'<br>Problem.cpp:(.text+0xe3): undefined reference to `MPI_Allreduce'<br>collect2: error: ld returned 1 exit status<br>make[2]: *** [bin/openmd_MPI] Error 1<br>make[1]: *** [CMakeFiles/openmd_MPI.dir/all] Error 2<br>make[1]: *** Waiting for unfinished jobs....<br><br><br>Please assist me with this<br><br>Regards <br>Cecil<br><br>Post-Doc student<br>CSIR - South Africa<br><br><br><br><font face="Verdana,Arial,Helvetica,Trebuchet MS" size="1">
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