OpenMD 3.0
Molecular Dynamics in the Open
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CosineBendType.hpp
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34 *
35 * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
36 * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
37 * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
38 * [4] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
39 * [5] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
40 * [6] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
41 * [7] Lamichhane, Newman & Gezelter, J. Chem. Phys. 141, 134110 (2014).
42 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
43 */
44
45/**
46 * @file CosineBendType.hpp
47 * @author gezelter
48 * @date 06/18/2010
49 * @version 1.1
50 */
51
52#ifndef TYPES_COSINEBENDTYPE_HPP
53#define TYPES_COSINEBENDTYPE_HPP
54
55#include "types/BendType.hpp"
56
57namespace OpenMD {
58 /**
59 * @class CosineBendType
60 *
61 * A simple harmonic bend using the cosine of the angle instead of
62 * the angle itself:
63 * \f[ V_\mathrm{bend} = (\cos(\theta) - \cos(\theta_0))^2 \f]
64 */
65 class CosineBendType : public BendType {
66 public:
67 CosineBendType(RealType theta, RealType k) : BendType(theta), k_(k) {
68 c0_ = cos(theta);
69 }
70
71 void setForceConstant(RealType k) { k_ = k; }
72
73 RealType getForceConstant() { return k_; }
74
75 void calcForce(RealType theta, RealType& V, RealType& dVdtheta) {
76 RealType ct = cos(theta);
77 RealType st = sin(theta);
78 RealType delta = ct - c0_;
79
80 V = 0.5 * k_ * delta * delta;
81
82 dVdtheta = -k_ * delta * st;
83 }
84
85 private:
86 RealType k_;
87 RealType c0_;
88 };
89} // namespace OpenMD
90
91#endif // TYPES_COSINEBENDTYPE_HPP
A simple harmonic bend using the cosine of the angle instead of the angle itself:
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.