OpenMD 3.0
Molecular Dynamics in the Open
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CubicBendType.hpp
1/*
2 * Copyright (c) 2004-present, The University of Notre Dame. All rights
3 * reserved.
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6 * modification, are permitted provided that the following conditions are met:
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9 * this list of conditions and the following disclaimer.
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17 * this software without specific prior written permission.
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31 * SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your
32 * research, please cite the appropriate papers when you publish your
33 * work. Good starting points are:
34 *
35 * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
36 * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
37 * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
38 * [4] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
39 * [5] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
40 * [6] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
41 * [7] Lamichhane, Newman & Gezelter, J. Chem. Phys. 141, 134110 (2014).
42 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
43 */
44
45/**
46 * @file BendType.hpp
47 * @author tlin
48 * @date 11/01/2004
49 * @version 1.0
50 */
51
52#ifndef TYPES_CUBICBENDTYPE_HPP
53#define TYPES_CUBICBENDTYPE_HPP
54
55#include "types/BendType.hpp"
56
57namespace OpenMD {
58 /**
59 * @class CubicBendType
60 * @todo document
61 */
62 class CubicBendType : public BendType {
63 public:
64 CubicBendType(RealType theta, RealType k3, RealType k2, RealType k1,
65 RealType k0) :
66 BendType(theta),
67 k3_(k3), k2_(k2), k1_(k1), k0_(k0) {}
68
69 void setForceConstant(RealType k3, RealType k2, RealType k1, RealType k0) {
70 k3_ = k3;
71 k2_ = k2;
72 k1_ = k1;
73 k0_ = k0;
74 }
75
76 void getForceConstant(RealType& k3, RealType& k2, RealType& k1,
77 RealType& k0) {
78 k3 = k3_;
79 k2 = k2_;
80 k1 = k1_;
81 k0 = k0_;
82 }
83
84 virtual void calcForce(RealType theta, RealType& V, RealType& dVdTheta) {
85 RealType delta = theta - theta0_;
86 RealType delta2 = delta * delta;
87 RealType delta3 = delta2 * delta;
88
89 V = k0_ + k1_ * delta + k2_ * delta2 + k3_ * delta3;
90 dVdTheta = k1_ + 2.0 * k2_ * delta + 3.0 * k3_ * delta2;
91 }
92
93 private:
94 RealType k3_;
95 RealType k2_;
96 RealType k1_;
97 RealType k0_;
98 };
99} // namespace OpenMD
100
101#endif // TYPES_CUBICBENDTYPE_HPP
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.