OpenMD 3.0
Molecular Dynamics in the Open
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CubicBondType.hpp
1/*
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32 * research, please cite the appropriate papers when you publish your
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34 *
35 * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
36 * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
37 * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
38 * [4] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
39 * [5] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
40 * [6] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
41 * [7] Lamichhane, Newman & Gezelter, J. Chem. Phys. 141, 134110 (2014).
42 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
43 */
44
45/**
46 * @file BondType.hpp
47 * @author tlin
48 * @date 11/01/2004
49 * @version 1.0
50 */
51
52#ifndef TYPES_CUBICBONDTYPE_HPP
53#define TYPES_CUBICBONDTYPE_HPP
54
55#include "types/BondType.hpp"
56
57namespace OpenMD {
58 /**
59 * @class CubicBondType
60 * @todo document
61 */
62 class CubicBondType : public BondType {
63 public:
64 CubicBondType(RealType r0, RealType k3, RealType k2, RealType k1,
65 RealType k0) :
66 BondType(r0),
67 k3_(k3), k2_(k2), k1_(k1), k0_(k0) {}
68
69 void setForceConstant(RealType k3, RealType k2, RealType k1, RealType k0) {
70 k3_ = k3;
71 k2_ = k2;
72 k1_ = k1;
73 k0_ = k0;
74 }
75
76 void getForceConstant(RealType& k3, RealType& k2, RealType& k1,
77 RealType& k0) {
78 k3 = k3_;
79 k2 = k2_;
80 k1 = k1_;
81 k0 = k0_;
82 }
83
84 virtual void calcForce(RealType r, RealType& V, RealType& dVdr) {
85 RealType dr = r - r0;
86 RealType dr2 = dr * dr;
87 RealType dr3 = dr2 * dr;
88
89 V = k0_ + k1_ * dr + k2_ * dr2 + k3_ * dr3;
90 dVdr = k1_ + 2.0 * k2_ * dr + 3.0 * k3_ * dr2;
91 }
92
93 private:
94 RealType k3_;
95 RealType k2_;
96 RealType k1_;
97 RealType k0_;
98 };
99} // namespace OpenMD
100
101#endif // TYPES_CUBICBONDTYPE_HPP
BondType class is responsible for calculating the force and energy of the bond.
Definition BondType.hpp:64
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.