OpenMD 3.0
Molecular Dynamics in the Open
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FluctuatingChargeNVT.hpp
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35 * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
36 * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
37 * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
38 * [4] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
39 * [5] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
40 * [6] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
41 * [7] Lamichhane, Newman & Gezelter, J. Chem. Phys. 141, 134110 (2014).
42 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
43 */
44
45#ifndef INTEGRATORS_FLUCTUATINGCHARGENVT_HPP
46#define INTEGRATORS_FLUCTUATINGCHARGENVT_HPP
47
48#include "brains/Thermo.hpp"
49#include "flucq/FluctuatingChargePropagator.hpp"
50
51namespace OpenMD {
52
54 public:
56
57 int getMaxIterationNumber() { return maxIterNum_; }
58
59 void setMaxIterationNumber(int maxIter) { maxIterNum_ = maxIter; }
60
61 RealType getTauThermostat() { return tauThermostat_; }
62
63 void setTauThermostat(RealType tt) { tauThermostat_ = tt; }
64
65 RealType getTargetTemp() { return targetTemp_; }
66
67 void setTargetTemp(RealType tt) { targetTemp_ = tt; }
68
69 RealType getChiTolerance() { return chiTolerance_; }
70
71 void setChiTolerance(RealType tol) { chiTolerance_ = tol; }
72
73 private:
74 virtual void initialize();
75 virtual void moveA();
76 virtual void moveB();
77 virtual RealType calcConservedQuantity();
78 virtual void updateSizes();
79 virtual void resetPropagator();
80
81 std::vector<RealType> oldVel_;
82 int maxIterNum_;
83 RealType targetTemp_;
84 RealType tauThermostat_;
85 RealType chiTolerance_;
86 RealType dt2_;
87 RealType dt_;
88
89 Snapshot* snap {nullptr};
90 Thermo thermo;
91 };
92} // namespace OpenMD
93
94#endif
abstract class for propagating fluctuating charge variables
One of the heavy-weight classes of OpenMD, SimInfo maintains objects and variables relating to the cu...
Definition SimInfo.hpp:93
The Snapshot class is a repository storing dynamic data during a Simulation.
Definition Snapshot.hpp:147
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.