OpenMD 3.0
Molecular Dynamics in the Open
Loading...
Searching...
No Matches
FluctuatingChargeObjectiveFunction.hpp
1/*
2 * Copyright (c) 2004-present, The University of Notre Dame. All rights
3 * reserved.
4 *
5 * Redistribution and use in source and binary forms, with or without
6 * modification, are permitted provided that the following conditions are met:
7 *
8 * 1. Redistributions of source code must retain the above copyright notice,
9 * this list of conditions and the following disclaimer.
10 *
11 * 2. Redistributions in binary form must reproduce the above copyright notice,
12 * this list of conditions and the following disclaimer in the documentation
13 * and/or other materials provided with the distribution.
14 *
15 * 3. Neither the name of the copyright holder nor the names of its
16 * contributors may be used to endorse or promote products derived from
17 * this software without specific prior written permission.
18 *
19 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
20 * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
21 * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
22 * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
23 * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
24 * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
25 * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
26 * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
27 * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
28 * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
29 * POSSIBILITY OF SUCH DAMAGE.
30 *
31 * SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your
32 * research, please cite the appropriate papers when you publish your
33 * work. Good starting points are:
34 *
35 * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
36 * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
37 * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
38 * [4] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
39 * [5] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
40 * [6] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
41 * [7] Lamichhane, Newman & Gezelter, J. Chem. Phys. 141, 134110 (2014).
42 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
43 */
44
45#ifndef OPTIMIZATION_FLUCTUATINGCHARGEOBJECTIVEFUNCTION_HPP
46#define OPTIMIZATION_FLUCTUATINGCHARGEOBJECTIVEFUNCTION_HPP
47
49#include "brains/Thermo.hpp"
50#include "flucq/FluctuatingChargeConstraints.hpp"
52
53using namespace QuantLib;
54namespace OpenMD {
56 public:
58 SimInfo* info, ForceManager* forceMan,
59 FluctuatingChargeConstraints* fqConstraints);
60
61 virtual RealType value(const DynamicVector<RealType>& x);
62 virtual void gradient(DynamicVector<RealType>& grad,
63 const DynamicVector<RealType>& x);
64 virtual RealType valueAndGradient(DynamicVector<RealType>& grad,
65 const DynamicVector<RealType>& x);
66
67 DynamicVector<RealType> setInitialCoords();
68
69 private:
70 // transform minimization coordinates into cartesian and
71 // rotational coordinates
72 void setCoor(const DynamicVector<RealType>& x) const;
73 // transform cartesian and rotational coordinates into minimization
74 // coordinates
75 void getGrad(DynamicVector<RealType>& grad);
76
77 SimInfo* info_ {nullptr};
78 ForceManager* forceMan_;
79 FluctuatingChargeConstraints* fqConstraints_;
80 Thermo thermo;
81 int nFlucQ_;
82
83#ifdef IS_MPI
84 int nproc_;
85 int myrank_;
86 std::vector<int> displacements_;
87#endif
88 };
89} // namespace OpenMD
90
91#endif
Optimization objective function class.
virtual RealType value(const DynamicVector< RealType > &x)
method to overload to compute the objective function value in x
virtual void gradient(DynamicVector< RealType > &grad, const DynamicVector< RealType > &x)
method to overload to compute grad_f, the first derivative of
virtual RealType valueAndGradient(DynamicVector< RealType > &grad, const DynamicVector< RealType > &x)
method to overload to compute grad_f, the first derivative
ForceManager is responsible for calculating both the short range (bonded) interactions and long range...
One of the heavy-weight classes of OpenMD, SimInfo maintains objects and variables relating to the cu...
Definition SimInfo.hpp:93
Objective function abstract class for optimization problem.
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.