OpenMD 3.0
Molecular Dynamics in the Open
Loading...
Searching...
No Matches
NVT.hpp
Go to the documentation of this file.
1/*
2 * Copyright (c) 2004-present, The University of Notre Dame. All rights
3 * reserved.
4 *
5 * Redistribution and use in source and binary forms, with or without
6 * modification, are permitted provided that the following conditions are met:
7 *
8 * 1. Redistributions of source code must retain the above copyright notice,
9 * this list of conditions and the following disclaimer.
10 *
11 * 2. Redistributions in binary form must reproduce the above copyright notice,
12 * this list of conditions and the following disclaimer in the documentation
13 * and/or other materials provided with the distribution.
14 *
15 * 3. Neither the name of the copyright holder nor the names of its
16 * contributors may be used to endorse or promote products derived from
17 * this software without specific prior written permission.
18 *
19 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
20 * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
21 * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
22 * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
23 * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
24 * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
25 * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
26 * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
27 * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
28 * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
29 * POSSIBILITY OF SUCH DAMAGE.
30 *
31 * SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your
32 * research, please cite the appropriate papers when you publish your
33 * work. Good starting points are:
34 *
35 * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
36 * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
37 * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
38 * [4] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
39 * [5] Kuang & Gezelter, Mol. Phys., 110, 691-701 (2012).
40 * [6] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
41 * [7] Lamichhane, Newman & Gezelter, J. Chem. Phys. 141, 134110 (2014).
42 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
43 */
44
45/**
46 * @file NVT.hpp
47 * @author tlin
48 * @date 11/19/2004
49 * @version 1.0
50 */
51
52#ifndef INTEGRATOR_NVT_HPP
53#define INTEGRATOR_NVT_HPP
54
55#include "integrators/VelocityVerletIntegrator.hpp"
56
57namespace OpenMD {
58
59 /**
60 * @class NVT NVT.hpp "integrators/NVT.hpp"
61 * Basic thermostating via Hoover, Phys.Rev.A, 1985, Vol. 31 (5) 1695-1697
62 * @todo document
63 */
65 public:
66 NVT(SimInfo* info);
67
68 int getMaxIterationNumber() { return maxIterNum_; }
69
70 void setMaxIterationNumber(int maxIter) { maxIterNum_ = maxIter; }
71
72 RealType getTauThermostat() { return tauThermostat_; }
73
74 void setTauThermostat(RealType tt) { tauThermostat_ = tt; }
75
76 RealType getTargetTemp() { return targetTemp_; }
77
78 void setTargetTemp(RealType tt) { targetTemp_ = tt; }
79
80 RealType getChiTolerance() { return chiTolerance_; }
81
82 void setChiTolerance(RealType tol) { chiTolerance_ = tol; }
83
84 protected:
85 virtual void moveA();
86
87 virtual void moveB();
88
89 virtual void doUpdateSizes();
90
91 virtual void resetIntegrator();
92
93 private:
94 virtual RealType calcConservedQuantity();
95
96 int maxIterNum_;
97 RealType targetTemp_;
98 RealType tauThermostat_;
99 RealType chiTolerance_;
100
101 std::vector<Vector3d> oldVel_;
102 std::vector<Vector3d> oldJi_;
103 };
104} // namespace OpenMD
105
106#endif // INTEGRATOR_NVT_HPP
Basic thermostating via Hoover, Phys.Rev.A, 1985, Vol.
Definition NVT.hpp:64
One of the heavy-weight classes of OpenMD, SimInfo maintains objects and variables relating to the cu...
Definition SimInfo.hpp:93
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.