OpenMD 3.0
Molecular Dynamics in the Open
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PolynomialInversionType.hpp
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35 * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
36 * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
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40 * [6] Lamichhane, Gezelter & Newman, J. Chem. Phys. 141, 134109 (2014).
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42 * [8] Bhattarai, Newman & Gezelter, Phys. Rev. B 99, 094106 (2019).
43 */
44
45/**
46 * @file PolynomialInversionType.hpp
47 * @author teng lin
48 * @date 11/16/2004
49 * @version 1.0
50 */
51
52#ifndef TYPES_POLYNOMIALINVERSIONTYPE_HPP
53#define TYPES_POLYNOMIALINVERSIONTYPE_HPP
54
55#include "math/Polynomial.hpp"
57
58namespace OpenMD {
59
60 /**
61 * @class PolynomialInversionType PolynomialInversionType.hpp
62 * "types/PolynomialInversionType.hpp"
63 * @todo documentation
64 */
66 public:
67 PolynomialInversionType() { /* polynomial_ = new DoublePolynomial(); */
68 }
69
70 RealType getCoefficient(int power) {
71 return polynomial_.getCoefficient(power);
72 }
73
74 void addCoefficient(int power, RealType coefficient) {
75 polynomial_.addCoefficient(power, coefficient);
76 }
77
78 void setCoefficient(int power, RealType coefficient) {
79 polynomial_.setCoefficient(power, coefficient);
80 }
81
82 void setPolynomial(DoublePolynomial p) { polynomial_ = p; }
83
84 virtual InversionKey getKey() { return itCosAngle; }
85
86 virtual void calcForce(RealType cosPhi, RealType& V, RealType& dVdCosPhi) {
87 V = polynomial_.evaluate(cosPhi);
88 dVdCosPhi = polynomial_.evaluateDerivative(cosPhi);
89 }
90
91 // friend std::ostream& operator <<(std::ostream& os,
92 // PolynomialInversionType& pit);
93 private:
94 DoublePolynomial polynomial_;
95 };
96
97 /*
98 std::ostream& operator <<(std::ostream& os, PolynomialInversionType& ptt) {
99 DoublePolynomial::const_iterator i;
100
101 i = ptt.polynomial_.begin();
102
103 if (i == ptt.polynomial_.end()) {
104 os << "This Polynomial contains nothing" << std::endl;
105 return os;
106 }
107
108 os << "This Polynomial contains below terms:" << std::endl;
109
110 while(true){
111 os << i->second << "*" << "(cosPhi)" << "^" << i->first;
112
113 if (++i == ptt.polynomial_.end()) {
114 //if we reach the end of the polynomial pair, write out a
115 //newline and then escape the loop
116 os << std::endl;
117 break;
118 } else {
119 //otherwise, write out a "+"
120 os << " + ";
121 }
122 }
123
124 os << std::endl;
125 return os;
126 }
127 */
128
129} // namespace OpenMD
130
131#endif // TYPES_POLYNOMIALINVERSIONTYPE_HPP
void addCoefficient(int exponent, const Real &coefficient)
Set the coefficent of the specified exponent.
Real evaluateDerivative(const Real &x)
Returns the first derivative of this polynomial.
Real getCoefficient(ExponentType exponent)
Returns the coefficient associated with the given power for this Polynomial.
Real evaluate(const Real &x)
Calculates the value of this Polynomial evaluated at the given x value.
void setCoefficient(int exponent, const Real &coefficient)
Set the coefficent of the specified exponent, if the coefficient is already there,...
"types/PolynomialInversionType.hpp"
This basic Periodic Table class was originally taken from the data.cpp file in OpenBabel.